Wall clock time and date at job start Tue Mar 31 2020 05:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47145 * 2 1 4 4 C 1.53003 * 109.47212 * 240.00332 * 2 1 3 5 5 C 1.50703 * 109.47289 * 59.99641 * 4 2 1 6 6 O 1.20826 * 119.99506 * 0.02562 * 5 4 2 7 7 O 1.34224 * 120.00357 * 180.02562 * 5 4 2 8 8 N 1.46499 * 109.47318 * 120.00333 * 2 1 3 9 9 C 1.35316 * 125.86879 * 285.29525 * 8 2 1 10 10 C 1.35346 * 106.17696 * 180.18776 * 9 8 2 11 11 C 1.50696 * 126.75136 * 179.85675 * 10 9 8 12 12 C 1.52997 * 109.47242 * 124.70936 * 11 10 9 13 13 C 1.53006 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47184 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99819 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00046 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99809 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99912 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47123 * 90.00333 * 18 16 14 20 20 H 1.48506 * 109.46940 * 210.00455 * 18 16 14 21 21 H 1.48493 * 109.47121 * 329.99876 * 18 16 14 22 22 N 1.33775 * 106.49630 * 359.58825 * 10 9 8 23 23 N 1.28632 * 108.88391 * 0.26614 * 22 10 9 24 24 H 1.08993 * 109.47093 * 299.99584 * 1 2 3 25 25 H 1.09001 * 109.47370 * 60.00000 * 1 2 3 26 26 H 1.09002 * 109.47321 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47679 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47425 * 300.00360 * 3 2 1 29 29 H 1.09005 * 109.47153 * 60.00408 * 3 2 1 30 30 H 1.08994 * 109.47080 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47121 * 300.00298 * 4 2 1 32 32 H 0.96696 * 117.00288 * 180.02562 * 7 5 4 33 33 H 1.08001 * 126.90819 * 0.03578 * 9 8 2 34 34 H 1.08996 * 109.47390 * 4.70906 * 11 10 9 35 35 H 1.09001 * 109.46948 * 244.70548 * 11 10 9 36 36 H 1.09001 * 109.47502 * 60.00161 * 12 11 10 37 37 H 1.09001 * 109.47289 * 299.99957 * 12 11 10 38 38 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 39 39 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 40 40 H 0.97004 * 119.99097 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 8 0.8433 0.9718 -2.3688 7 8 1.8614 -0.4696 -3.6989 8 7 2.0183 -0.6907 1.1961 9 6 2.0099 -0.1967 2.4559 10 6 2.5520 -1.1567 3.2409 11 6 2.7678 -1.0877 4.7308 12 6 2.0865 -2.2826 5.4007 13 6 2.3051 -2.2122 6.9134 14 6 1.6346 -3.3895 7.5732 15 1 1.1051 -4.1152 6.9736 16 6 1.6962 -3.5397 8.9424 17 7 1.1105 -4.5670 9.5182 18 14 2.6114 -2.2842 9.9794 19 1 1.6771 -1.2051 10.3891 20 1 3.1619 -2.9478 11.1885 21 1 3.7227 -1.7018 9.1852 22 7 2.8531 -2.1812 2.4351 23 7 2.5247 -1.8735 1.2301 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1299 -0.7216 -1.2490 31 1 1.6766 -1.7489 -1.2494 32 1 1.5160 0.0196 -4.4581 33 1 1.6463 0.7702 2.7710 34 1 2.3408 -0.1624 5.1173 35 1 3.8364 -1.1119 4.9446 36 1 2.5136 -3.2081 5.0142 37 1 1.0180 -2.2585 5.1869 38 1 3.3736 -2.2362 7.1276 39 1 1.8777 -1.2869 7.2995 40 1 1.1542 -4.6727 10.4815 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254093613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:51 Heat of formation + Delta-G solvation = -31.468117 kcal Electronic energy + Delta-G solvation = -21617.596991 eV Core-core repulsion = 18240.450789 eV Total energy + Delta-G solvation = -3377.146202 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.32170 -41.63236 -38.47827 -37.03032 -36.47823 -34.54758 -32.83312 -32.33163 -30.03777 -29.07487 -28.51755 -25.38854 -24.90598 -23.10635 -22.29078 -21.86179 -20.42334 -19.33302 -18.82688 -17.98094 -17.44797 -17.09179 -17.00414 -16.32165 -16.01084 -15.51650 -15.29764 -15.10958 -14.86678 -14.56697 -14.14836 -13.89730 -13.59013 -13.50787 -13.34805 -13.03536 -12.93580 -12.70272 -12.52093 -12.47562 -12.23050 -12.17785 -11.92534 -11.71715 -11.58689 -11.42368 -11.31061 -11.23986 -10.94607 -10.72108 -10.02027 -8.25650 -6.30325 0.65904 1.06444 1.16735 1.39789 1.43462 1.55963 1.57293 2.13620 2.41237 3.03298 3.09770 3.43446 3.48815 3.59087 3.92153 4.15036 4.25293 4.26775 4.37951 4.40626 4.44363 4.54954 4.58638 4.67852 4.70657 4.71499 4.83559 5.04302 5.09969 5.12574 5.13160 5.20236 5.28482 5.59746 5.61270 5.68783 5.72690 5.74719 6.33764 6.78167 6.92653 7.33985 7.56211 8.91948 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.046095 B = 0.002752 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.289054 B =10173.820114 C =10314.151481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.181 3.819 3 C -0.167 4.167 4 C -0.117 4.117 5 C 0.502 3.498 6 O -0.524 6.524 7 O -0.509 6.509 8 N -0.279 5.279 9 C -0.030 4.030 10 C -0.029 4.029 11 C -0.027 4.027 12 C -0.085 4.085 13 C -0.010 4.010 14 C -0.536 4.536 15 H 0.021 0.979 16 C -0.004 4.004 17 N -0.958 5.958 18 Si 0.960 3.040 19 H -0.262 1.262 20 H -0.287 1.287 21 H -0.240 1.240 22 N -0.306 5.306 23 N -0.113 5.113 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.434 0.566 33 H 0.227 0.773 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.034 0.966 37 H 0.038 0.962 38 H 0.023 0.977 39 H 0.031 0.969 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 18.699 -27.152 33.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.099 3.901 3 C -0.225 4.225 4 C -0.155 4.155 5 C 0.345 3.655 6 O -0.414 6.414 7 O -0.323 6.323 8 N -0.074 5.074 9 C -0.181 4.181 10 C -0.167 4.167 11 C -0.066 4.066 12 C -0.123 4.123 13 C -0.048 4.048 14 C -0.574 4.574 15 H 0.039 0.961 16 C -0.199 4.199 17 N -0.599 5.599 18 Si 0.782 3.218 19 H -0.186 1.186 20 H -0.213 1.213 21 H -0.163 1.163 22 N -0.172 5.172 23 N -0.091 5.091 24 H 0.096 0.904 25 H 0.130 0.870 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.129 0.871 29 H 0.105 0.895 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.297 0.703 33 H 0.243 0.757 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.281 17.415 -27.542 32.665 hybrid contribution -0.528 0.649 0.805 1.162 sum 1.753 18.064 -26.736 32.314 Atomic orbital electron populations 1.22516 0.90657 1.03372 1.06185 1.20982 0.96325 0.93077 0.79734 1.22512 1.02073 0.91291 1.06638 1.21364 1.04893 1.01490 0.87771 1.22578 0.76310 0.81564 0.85037 1.90635 1.36739 1.26873 1.87175 1.84484 1.71901 1.59102 1.16847 1.47782 1.39396 1.11441 1.08798 1.23738 1.07281 1.03789 0.83290 1.22346 1.04171 0.91668 0.98529 1.19979 1.01835 0.99854 0.84961 1.21194 0.98803 0.97150 0.95179 1.19547 0.96411 0.95364 0.93428 1.21569 1.33604 1.09552 0.92666 0.96100 1.26173 0.96217 0.97961 0.99578 1.70111 1.46567 1.32181 1.11002 0.85518 0.79989 0.78708 0.77573 1.18645 1.21301 1.16307 1.75039 1.19850 1.25759 0.96562 1.78125 1.15558 0.98982 1.16453 0.90354 0.86963 0.92739 0.91457 0.87099 0.89523 0.85883 0.86156 0.70288 0.75658 0.87498 0.90135 0.94737 0.94265 0.95849 0.95118 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 8.42 71.98 0.61 -1.81 16 2 C 0.18 2.67 0.97 3.60 0.00 2.67 16 3 C -0.17 -1.82 8.00 71.98 0.58 -1.25 16 4 C -0.12 -1.52 4.45 29.85 0.13 -1.39 16 5 C 0.50 5.43 7.74 71.24 0.55 5.98 16 6 O -0.52 -7.10 12.11 21.97 0.27 -6.83 16 7 O -0.51 -3.64 13.42 -51.36 -0.69 -4.33 16 8 N -0.28 -6.17 3.18 -307.53 -0.98 -7.15 16 9 C -0.03 -0.66 10.62 83.49 0.89 0.22 16 10 C -0.03 -0.87 6.50 41.59 0.27 -0.60 16 11 C -0.03 -0.84 5.79 29.85 0.17 -0.67 16 12 C -0.08 -3.56 5.13 30.60 0.16 -3.41 16 13 C -0.01 -0.49 4.04 29.85 0.12 -0.36 16 14 C -0.54 -32.52 9.66 25.60 0.25 -32.27 16 15 H 0.02 1.41 7.99 -2.91 -0.02 1.39 16 16 C 0.00 -0.22 5.47 84.65 0.46 0.25 16 17 N -0.96 -62.37 13.96 21.45 0.30 -62.07 16 18 Si 0.96 44.81 27.47 68.60 1.88 46.69 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 22 N -0.31 -10.94 12.40 -48.60 -0.60 -11.55 16 23 N -0.11 -3.39 12.18 37.02 0.45 -2.94 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.11 1.49 5.52 -2.39 -0.01 1.48 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.11 1.21 5.52 -2.38 -0.01 1.19 16 29 H 0.09 0.73 7.40 -2.38 -0.02 0.72 16 30 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.12 1.72 8.03 -2.39 -0.02 1.70 16 32 H 0.43 -0.73 9.10 -74.06 -0.67 -1.40 16 33 H 0.23 2.87 7.60 -2.91 -0.02 2.84 16 34 H 0.11 2.59 8.12 -2.39 -0.02 2.57 16 35 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.02 1.08 7.20 -2.39 -0.02 1.07 16 39 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 40 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -80.92 331.64 5.14 -75.79 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 0.32 Total: 5.03 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 4.19 Total: -32.64 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -0.83 Total: -83.71 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.42 Total: -11.17 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -80.92 5.14 -75.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254093613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.318 kcal (2) G-P(sol) polarization free energy of solvation -80.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds