Wall clock time and date at job start Tue Mar 31 2020 05:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 H 1.09002 * 109.47594 * 305.00166 * 3 2 1 5 5 C 1.50706 * 109.46986 * 184.99980 * 3 2 1 6 6 H 1.08002 * 119.99593 * 240.00236 * 5 3 2 7 7 C 1.37868 * 119.99912 * 59.99886 * 5 3 2 8 8 N 1.31513 * 120.00221 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99901 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47270 * 60.00576 * 9 7 5 11 11 H 1.48507 * 109.47319 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47499 * 300.00458 * 9 7 5 13 13 N 1.46503 * 109.47135 * 65.00042 * 3 2 1 14 14 C 1.35046 * 126.39582 * 60.11908 * 13 3 2 15 15 N 1.30505 * 108.69759 * 180.26780 * 14 13 3 16 16 C 1.34129 * 109.25247 * 359.76670 * 15 14 13 17 17 C 1.34663 * 108.02440 * 0.02562 * 16 15 14 18 18 C 1.50700 * 126.59120 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47282 * 85.02499 * 18 17 16 20 20 H 1.08996 * 109.47114 * 54.99882 * 19 18 17 21 21 N 1.46900 * 109.46967 * 294.99854 * 19 18 17 22 22 C 1.50695 * 109.47101 * 175.00236 * 19 18 17 23 23 O 1.20825 * 120.00224 * 99.99715 * 22 19 18 24 24 O 1.34232 * 119.99727 * 279.99791 * 22 19 18 25 25 C 1.45206 * 116.99878 * 180.02562 * 24 22 19 26 26 H 1.09006 * 109.47092 * 59.99874 * 1 2 3 27 27 H 1.08997 * 109.47695 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47141 * 299.99964 * 1 2 3 29 29 H 1.08995 * 109.47105 * 240.00185 * 2 1 3 30 30 H 1.08996 * 109.47058 * 120.00101 * 2 1 3 31 31 H 0.97002 * 120.00324 * 179.97438 * 8 7 5 32 32 H 1.07996 * 125.65120 * 359.97438 * 14 13 3 33 33 H 1.08000 * 125.98240 * 180.02562 * 16 15 14 34 34 H 1.09003 * 109.46796 * 325.02166 * 18 17 16 35 35 H 1.09003 * 109.46938 * 205.02487 * 18 17 16 36 36 H 1.00903 * 111.00398 * 176.04851 * 21 19 18 37 37 H 1.00906 * 111.00162 * 300.00280 * 21 19 18 38 38 H 1.09001 * 109.47157 * 179.97438 * 25 24 22 39 39 H 1.09004 * 109.47122 * 299.99817 * 25 24 22 40 40 H 1.09000 * 109.47070 * 59.99842 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1432 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8812 -1.3817 10 1 6.5975 0.1471 -0.2349 11 1 6.3978 0.2165 -2.6503 12 1 6.4995 2.2814 -1.3820 13 7 1.6524 2.0975 1.2518 14 6 2.0037 1.7150 2.4985 15 7 1.4645 2.5379 3.3560 16 6 0.7612 3.4685 2.6940 17 6 0.8681 3.2124 1.3762 18 6 0.2405 3.9989 0.2544 19 6 1.1446 5.1784 -0.1096 20 1 2.1443 4.8116 -0.3421 21 7 1.2160 6.1089 1.0249 22 6 0.5796 5.8926 -1.3102 23 8 -0.0571 6.9091 -1.1642 24 8 0.7836 5.3995 -2.5419 25 6 0.2106 6.1401 -3.6517 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8292 -0.0604 -2.9502 32 1 2.6238 0.8659 2.7451 33 1 0.2064 4.2808 3.1397 34 1 -0.7330 4.3719 0.5725 35 1 0.1161 3.3545 -0.6159 36 1 1.8578 6.8637 0.8337 37 1 0.3010 6.4631 1.2602 38 1 0.4495 5.6349 -4.5875 39 1 -0.8717 6.1931 -3.5330 40 1 0.6241 7.1485 -3.6676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255151437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:03 Heat of formation + Delta-G solvation = -38.074630 kcal Electronic energy + Delta-G solvation = -23069.722535 eV Core-core repulsion = 19692.289853 eV Total energy + Delta-G solvation = -3377.432682 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.23729 -40.47391 -36.79529 -35.36807 -35.23676 -32.18975 -30.93440 -30.19577 -28.38648 -27.02760 -26.61454 -23.83660 -23.43123 -21.37617 -20.55242 -20.01441 -18.70288 -17.74892 -16.86324 -16.74429 -16.38771 -15.78266 -15.68275 -14.63766 -14.46081 -14.10672 -13.65996 -13.57488 -13.33905 -12.92563 -12.72370 -12.69504 -12.29686 -12.13365 -11.89977 -11.66014 -11.47767 -11.29609 -11.07619 -10.92889 -10.81243 -10.69242 -10.35747 -10.24513 -9.97562 -9.57907 -9.10168 -8.88726 -8.64590 -8.33151 -7.41656 -6.31947 -4.41936 2.11305 2.72615 3.09664 3.18061 3.22835 3.27187 3.97850 4.07351 4.25577 4.45673 4.82776 4.99530 5.06300 5.10138 5.18096 5.26405 5.45914 5.52579 5.69537 5.86485 5.94680 5.98673 6.07900 6.20740 6.30394 6.35587 6.48815 6.69255 6.74276 6.86992 6.96697 7.09978 7.37940 7.43088 7.55850 7.63312 7.71945 7.77310 7.96488 8.26826 8.66779 9.04388 9.26780 10.72759 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012189 B = 0.007108 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.624208 B = 3938.365361 C = 4987.973676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.258 3.742 4 H 0.057 0.943 5 C -0.535 4.535 6 H 0.066 0.934 7 C 0.072 3.928 8 N -0.884 5.884 9 Si 0.903 3.097 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.414 5.414 14 C 0.188 3.812 15 N -0.522 5.522 16 C -0.018 4.018 17 C -0.027 4.027 18 C -0.021 4.021 19 C 0.108 3.892 20 H 0.124 0.876 21 N -0.799 5.799 22 C 0.431 3.569 23 O -0.522 6.522 24 O -0.349 6.349 25 C 0.033 3.967 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.110 0.890 30 H 0.043 0.957 31 H 0.268 0.732 32 H 0.190 0.810 33 H 0.153 0.847 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.344 0.656 37 H 0.348 0.652 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.670 6.680 -1.610 8.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.157 3.843 4 H 0.075 0.925 5 C -0.573 4.573 6 H 0.084 0.916 7 C -0.132 4.132 8 N -0.521 5.521 9 Si 0.730 3.270 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.092 5.092 14 C -0.095 4.095 15 N -0.241 5.241 16 C -0.168 4.168 17 C -0.145 4.145 18 C -0.060 4.060 19 C -0.006 4.006 20 H 0.142 0.858 21 N -0.329 5.329 22 C 0.272 3.728 23 O -0.411 6.411 24 O -0.263 6.263 25 C -0.061 4.061 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.128 0.872 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.207 0.793 33 H 0.170 0.830 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.433 6.106 -0.691 8.202 hybrid contribution 0.517 0.918 -2.005 2.265 sum -4.916 7.024 -2.696 8.987 Atomic orbital electron populations 1.21823 0.98538 0.99916 1.00322 1.21952 0.92509 0.98586 1.03737 1.19356 0.95927 0.90071 0.78897 0.92533 1.21225 0.89811 1.39589 1.06713 0.91606 1.24855 0.98929 0.94336 0.95102 1.69829 1.35532 1.37339 1.09375 0.86465 0.84408 0.78572 0.77567 1.19914 1.21048 1.20034 1.45987 1.33808 1.19971 1.09462 1.24448 1.03298 1.01779 0.79988 1.70213 1.14149 1.06195 1.33512 1.21680 1.05015 1.00592 0.89516 1.20420 1.04306 0.93744 0.96013 1.19745 0.96425 0.93109 0.96740 1.21467 1.02491 0.93419 0.83259 0.85840 1.59099 1.15601 1.22943 1.35241 1.25848 0.77075 0.83984 0.85858 1.90621 1.38452 1.25247 1.86764 1.86672 1.70461 1.53306 1.15868 1.23262 0.98664 0.96719 0.87468 0.93649 0.94157 0.94198 0.87187 0.93831 0.92235 0.79302 0.82965 0.90091 0.89773 0.84274 0.83810 0.88058 0.92085 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.80 37.16 0.36 -2.39 16 2 C -0.13 -2.75 5.24 -26.73 -0.14 -2.89 16 3 C 0.26 5.74 2.32 -69.08 -0.16 5.58 16 4 H 0.06 1.35 6.71 -51.93 -0.35 1.00 16 5 C -0.54 -13.21 8.51 -34.44 -0.29 -13.51 16 6 H 0.07 1.68 7.73 -52.49 -0.41 1.28 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -22.40 11.29 55.43 0.63 -21.78 16 9 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 11 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.41 -8.51 2.06 -108.14 -0.22 -8.73 16 14 C 0.19 3.88 11.53 -90.37 -1.04 2.84 16 15 N -0.52 -10.84 11.25 -14.67 -0.17 -11.01 16 16 C -0.02 -0.33 11.51 -17.81 -0.21 -0.54 16 17 C -0.03 -0.50 6.00 -81.60 -0.49 -0.99 16 18 C -0.02 -0.33 5.07 -27.88 -0.14 -0.47 16 19 C 0.11 1.62 3.25 -68.87 -0.22 1.39 16 20 H 0.12 2.10 8.14 -51.93 -0.42 1.68 16 21 N -0.80 -10.58 8.46 -5.66 -0.05 -10.63 16 22 C 0.43 6.45 7.19 36.00 0.26 6.71 16 23 O -0.52 -8.26 16.00 -18.75 -0.30 -8.56 16 24 O -0.35 -5.24 10.57 -39.26 -0.41 -5.65 16 25 C 0.03 0.37 10.56 101.05 1.07 1.44 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 29 H 0.11 2.60 5.95 -51.93 -0.31 2.29 16 30 H 0.04 0.92 7.80 -51.93 -0.41 0.51 16 31 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 32 H 0.19 3.62 8.06 -52.49 -0.42 3.20 16 33 H 0.15 2.53 8.06 -52.49 -0.42 2.10 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.39 7.00 -51.93 -0.36 1.02 16 36 H 0.34 4.13 9.06 -39.29 -0.36 3.77 16 37 H 0.35 4.22 8.58 -39.29 -0.34 3.88 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 40 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -27.79 338.76 -7.41 -35.20 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -5.87 Total: 12.46 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.10 Total: -1.16 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.19 Total: -52.15 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.71 Total: -14.22 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.79 -7.41 -35.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.879 kcal (2) G-P(sol) polarization free energy of solvation -27.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds