Wall clock time and date at job start Tue Mar 31 2020 05:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 H 1.09002 * 109.47594 * 305.00166 * 3 2 1 5 5 C 1.50706 * 109.46986 * 184.99980 * 3 2 1 6 6 H 1.08002 * 119.99593 * 240.00236 * 5 3 2 7 7 C 1.37868 * 119.99912 * 59.99886 * 5 3 2 8 8 N 1.31513 * 120.00221 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99901 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47270 * 60.00576 * 9 7 5 11 11 H 1.48507 * 109.47319 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47499 * 300.00458 * 9 7 5 13 13 N 1.46503 * 109.47135 * 65.00042 * 3 2 1 14 14 C 1.35046 * 126.39582 * 60.11908 * 13 3 2 15 15 N 1.30505 * 108.69759 * 180.26780 * 14 13 3 16 16 C 1.34129 * 109.25247 * 359.76670 * 15 14 13 17 17 C 1.34663 * 108.02440 * 0.02562 * 16 15 14 18 18 C 1.50700 * 126.59120 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47282 * 85.02499 * 18 17 16 20 20 H 1.08996 * 109.47114 * 54.99882 * 19 18 17 21 21 N 1.46900 * 109.46967 * 294.99854 * 19 18 17 22 22 C 1.50695 * 109.47101 * 175.00236 * 19 18 17 23 23 O 1.20825 * 120.00224 * 99.99715 * 22 19 18 24 24 O 1.34232 * 119.99727 * 279.99791 * 22 19 18 25 25 C 1.45206 * 116.99878 * 180.02562 * 24 22 19 26 26 H 1.09006 * 109.47092 * 59.99874 * 1 2 3 27 27 H 1.08997 * 109.47695 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47141 * 299.99964 * 1 2 3 29 29 H 1.08995 * 109.47105 * 240.00185 * 2 1 3 30 30 H 1.08996 * 109.47058 * 120.00101 * 2 1 3 31 31 H 0.97002 * 120.00324 * 179.97438 * 8 7 5 32 32 H 1.07996 * 125.65120 * 359.97438 * 14 13 3 33 33 H 1.08000 * 125.98240 * 180.02562 * 16 15 14 34 34 H 1.09003 * 109.46796 * 325.02166 * 18 17 16 35 35 H 1.09003 * 109.46938 * 205.02487 * 18 17 16 36 36 H 1.00903 * 111.00398 * 176.04851 * 21 19 18 37 37 H 1.00906 * 111.00162 * 300.00280 * 21 19 18 38 38 H 1.09001 * 109.47157 * 179.97438 * 25 24 22 39 39 H 1.09004 * 109.47122 * 299.99817 * 25 24 22 40 40 H 1.09000 * 109.47070 * 59.99842 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1432 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8812 -1.3817 10 1 6.5975 0.1471 -0.2349 11 1 6.3978 0.2165 -2.6503 12 1 6.4995 2.2814 -1.3820 13 7 1.6524 2.0975 1.2518 14 6 2.0037 1.7150 2.4985 15 7 1.4645 2.5379 3.3560 16 6 0.7612 3.4685 2.6940 17 6 0.8681 3.2124 1.3762 18 6 0.2405 3.9989 0.2544 19 6 1.1446 5.1784 -0.1096 20 1 2.1443 4.8116 -0.3421 21 7 1.2160 6.1089 1.0249 22 6 0.5796 5.8926 -1.3102 23 8 -0.0571 6.9091 -1.1642 24 8 0.7836 5.3995 -2.5419 25 6 0.2106 6.1401 -3.6517 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8292 -0.0604 -2.9502 32 1 2.6238 0.8659 2.7451 33 1 0.2064 4.2808 3.1397 34 1 -0.7330 4.3719 0.5725 35 1 0.1161 3.3545 -0.6159 36 1 1.8578 6.8637 0.8337 37 1 0.3010 6.4631 1.2602 38 1 0.4495 5.6349 -4.5875 39 1 -0.8717 6.1931 -3.5330 40 1 0.6241 7.1485 -3.6676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255151437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:02 Heat of formation + Delta-G solvation = -53.396462 kcal Electronic energy + Delta-G solvation = -23070.386940 eV Core-core repulsion = 19692.289853 eV Total energy + Delta-G solvation = -3378.097086 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.77974 -41.65836 -37.93977 -37.09929 -36.45769 -34.02389 -32.42343 -31.62180 -29.47213 -28.76436 -27.88900 -25.27352 -25.01083 -23.00724 -21.76903 -21.54161 -20.26653 -18.93288 -18.59362 -17.99444 -17.65851 -17.36080 -16.80058 -16.34136 -15.98230 -15.50755 -15.11204 -14.78987 -14.60527 -14.40596 -14.22826 -14.10837 -13.83000 -13.49529 -13.22026 -13.11915 -12.99758 -12.81347 -12.65334 -12.54629 -12.11740 -11.93286 -11.88949 -11.85739 -11.69016 -11.34201 -10.71303 -10.49933 -10.06028 -9.94005 -8.93484 -8.22009 -6.37383 0.91603 1.42041 1.42795 1.46823 1.52569 1.77306 2.31281 2.51148 2.52369 3.07574 3.32595 3.69660 3.91179 3.99248 4.09618 4.19361 4.23236 4.27424 4.34105 4.47168 4.56841 4.59846 4.64483 4.72095 4.82761 4.87586 5.08278 5.21211 5.24832 5.25711 5.44420 5.59246 5.80623 5.88913 5.92360 6.11959 6.26135 6.40153 6.52275 6.57851 6.82667 7.33723 7.48162 8.81284 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012189 B = 0.007108 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.624208 B = 3938.365361 C = 4987.973676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.269 3.731 4 H 0.040 0.960 5 C -0.549 4.549 6 H 0.051 0.949 7 C 0.037 3.963 8 N -0.900 5.900 9 Si 0.953 3.047 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.277 1.277 13 N -0.420 5.420 14 C 0.170 3.830 15 N -0.535 5.535 16 C -0.022 4.022 17 C -0.026 4.026 18 C -0.018 4.018 19 C 0.118 3.882 20 H 0.099 0.901 21 N -0.799 5.799 22 C 0.438 3.562 23 O -0.530 6.530 24 O -0.368 6.368 25 C 0.025 3.975 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.269 0.731 32 H 0.195 0.805 33 H 0.177 0.823 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.352 0.648 37 H 0.357 0.643 38 H 0.123 0.877 39 H 0.067 0.933 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 7.321 -1.725 9.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C 0.167 3.833 4 H 0.058 0.942 5 C -0.587 4.587 6 H 0.070 0.930 7 C -0.165 4.165 8 N -0.538 5.538 9 Si 0.779 3.221 10 H -0.198 1.198 11 H -0.205 1.205 12 H -0.202 1.202 13 N -0.099 5.099 14 C -0.112 4.112 15 N -0.254 5.254 16 C -0.172 4.172 17 C -0.143 4.143 18 C -0.057 4.057 19 C 0.003 3.997 20 H 0.117 0.883 21 N -0.330 5.330 22 C 0.279 3.721 23 O -0.420 6.420 24 O -0.283 6.283 25 C -0.068 4.068 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.212 0.788 33 H 0.194 0.806 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.141 0.859 39 H 0.086 0.914 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.012 6.758 -0.800 9.081 hybrid contribution 0.676 0.766 -1.983 2.230 sum -5.336 7.524 -2.782 9.635 Atomic orbital electron populations 1.21688 0.96256 1.01162 1.00268 1.21802 0.94482 0.97534 1.02411 1.19053 0.94559 0.90525 0.79114 0.94220 1.21374 0.91165 1.39639 1.06497 0.93030 1.25421 1.02098 0.94105 0.94901 1.69911 1.36651 1.37631 1.09595 0.85683 0.80579 0.78272 0.77591 1.19793 1.20475 1.20245 1.45909 1.34461 1.20697 1.08829 1.24645 1.04010 1.02415 0.80102 1.70216 1.14611 1.06726 1.33864 1.22070 1.04848 1.00751 0.89520 1.20864 1.03413 0.93020 0.96963 1.19785 0.97484 0.92920 0.95463 1.21191 1.00915 0.93609 0.83999 0.88291 1.59066 1.16425 1.23197 1.34337 1.25679 0.76747 0.83680 0.85952 1.90613 1.38913 1.25526 1.86928 1.86650 1.70833 1.54178 1.16592 1.23562 0.99052 0.97107 0.87062 0.93491 0.92279 0.94310 0.89390 0.94114 0.92158 0.78789 0.80610 0.87611 0.90740 0.83405 0.82802 0.85897 0.91389 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.80 71.98 0.71 -4.20 16 2 C -0.12 -5.26 5.24 30.59 0.16 -5.10 16 3 C 0.27 12.06 2.32 44.25 0.10 12.16 16 4 H 0.04 1.92 6.71 -2.39 -0.02 1.91 16 5 C -0.55 -27.39 8.51 25.60 0.22 -27.17 16 6 H 0.05 2.68 7.73 -2.91 -0.02 2.65 16 7 C 0.04 1.83 5.29 84.65 0.45 2.28 16 8 N -0.90 -45.78 11.29 21.44 0.24 -45.54 16 9 Si 0.95 40.44 29.54 68.60 2.03 42.47 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 13 N -0.42 -17.20 2.06 -496.06 -1.02 -18.22 16 14 C 0.17 7.01 11.53 180.26 2.08 9.09 16 15 N -0.53 -21.75 11.25 -200.31 -2.25 -24.01 16 16 C -0.02 -0.81 11.51 83.52 0.96 0.15 16 17 C -0.03 -0.93 6.00 40.95 0.25 -0.68 16 18 C -0.02 -0.53 5.07 29.85 0.15 -0.38 16 19 C 0.12 3.43 3.25 44.17 0.14 3.57 16 20 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 21 N -0.80 -19.96 8.46 -171.81 -1.45 -21.42 16 22 C 0.44 12.62 7.19 71.23 0.51 13.13 16 23 O -0.53 -15.92 16.00 21.97 0.35 -15.57 16 24 O -0.37 -10.73 10.57 -51.44 -0.54 -11.28 16 25 C 0.03 0.53 10.56 113.37 1.20 1.73 16 26 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.04 1.39 7.75 -2.38 -0.02 1.37 16 29 H 0.09 4.18 5.95 -2.39 -0.01 4.16 16 30 H 0.04 1.71 7.80 -2.39 -0.02 1.70 16 31 H 0.27 13.11 8.31 -92.71 -0.77 12.33 16 32 H 0.20 7.52 8.06 -2.91 -0.02 7.49 16 33 H 0.18 5.39 8.06 -2.91 -0.02 5.36 16 34 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.07 2.41 7.00 -2.39 -0.02 2.40 16 36 H 0.35 7.96 9.06 -89.69 -0.81 7.15 16 37 H 0.36 7.89 8.58 -89.69 -0.77 7.12 16 38 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 1.32 8.13 -2.38 -0.02 1.30 16 40 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 Total: -1.00 -57.71 338.76 3.75 -53.96 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -0.52 Total: 35.02 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 6.92 Total: 4.58 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.49 Total: -109.18 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.19 Total: -26.84 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -57.71 3.75 -53.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.564 kcal (2) G-P(sol) polarization free energy of solvation -57.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds