Wall clock time and date at job start Tue Mar 31 2020 05:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45197 * 109.47037 * 2 1 4 4 C 1.34763 * 116.99622 * 180.02562 * 3 2 1 5 5 O 1.21523 * 120.00167 * 0.02562 * 4 3 2 6 6 C 1.47287 * 119.99570 * 180.02562 * 4 3 2 7 7 C 1.38120 * 126.42950 * 0.27715 * 6 4 3 8 8 N 1.34227 * 107.40640 * 180.14582 * 7 6 4 9 9 C 1.46506 * 125.73998 * 179.88034 * 8 7 6 10 10 H 1.09004 * 109.46980 * 154.71803 * 9 8 7 11 11 C 1.50699 * 109.47078 * 34.71842 * 9 8 7 12 12 H 1.08000 * 119.99982 * 354.56717 * 11 9 8 13 13 C 1.37879 * 119.99713 * 174.56870 * 11 9 8 14 14 N 1.31520 * 119.99914 * 350.68505 * 13 11 9 15 15 Si 1.86799 * 119.99894 * 170.69056 * 13 11 9 16 16 H 1.48498 * 109.47008 * 59.99773 * 15 13 11 17 17 H 1.48503 * 109.47217 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47265 * 299.99743 * 15 13 11 19 19 C 1.53006 * 109.47086 * 274.71555 * 9 8 7 20 20 C 1.53002 * 109.47153 * 294.61187 * 19 9 8 21 21 N 1.39922 * 108.51427 * 359.62076 * 8 7 6 22 22 C 1.30437 * 108.92130 * 0.23839 * 21 8 7 23 23 C 1.50696 * 125.99467 * 179.97438 * 22 21 8 24 24 N 1.46895 * 109.47390 * 90.02474 * 23 22 21 25 25 H 1.09005 * 109.46922 * 59.99888 * 1 2 3 26 26 H 1.08997 * 109.46803 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46886 * 299.99727 * 1 2 3 28 28 H 1.09000 * 109.46886 * 240.00273 * 2 1 3 29 29 H 1.09002 * 109.47261 * 120.00516 * 2 1 3 30 30 H 1.08000 * 126.30078 * 0.04432 * 7 6 4 31 31 H 0.96995 * 119.99425 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.46684 * 174.61432 * 19 9 8 33 33 H 1.09001 * 109.46845 * 54.61221 * 19 9 8 34 34 H 1.08999 * 109.46583 * 55.68378 * 20 19 9 35 35 H 1.09001 * 109.46807 * 295.68480 * 20 19 9 36 36 H 1.08997 * 109.46717 * 175.68443 * 20 19 9 37 37 H 1.09002 * 109.46898 * 210.02693 * 23 22 21 38 38 H 1.09003 * 109.46977 * 330.02263 * 23 22 21 39 39 H 1.00901 * 111.00214 * 56.04547 * 24 23 22 40 40 H 1.00902 * 111.00055 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5454 -0.0005 5 8 4.0903 0.5817 -0.0015 6 6 3.9130 2.9065 0.0000 7 6 3.1995 4.0892 0.0064 8 7 4.0888 5.0946 0.0012 9 6 3.7650 6.5234 0.0026 10 1 4.5935 7.0832 0.4368 11 6 2.5196 6.7554 0.8187 12 1 1.9699 5.9149 1.2160 13 6 2.0819 8.0408 1.0582 14 7 2.8415 9.0649 0.7359 15 14 0.4100 8.3275 1.8406 16 1 0.3712 7.6805 3.1766 17 1 0.1774 9.7865 1.9908 18 1 -0.6474 7.7436 0.9769 19 6 3.5287 6.9942 -1.4339 20 6 4.8320 6.8839 -2.2277 21 7 5.3770 4.5484 0.0002 22 6 5.2847 3.2473 -0.0005 23 6 6.4383 2.2776 -0.0022 24 7 6.8141 1.9612 1.3821 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.1240 4.1870 0.0127 31 1 2.5337 9.9691 0.9048 32 1 3.1949 8.0318 -1.4258 33 1 2.7656 6.3706 -1.8996 34 1 5.2061 5.8617 -2.1715 35 1 5.5719 7.5653 -1.8078 36 1 4.6462 7.1461 -3.2692 37 1 6.1433 1.3630 -0.5168 38 1 7.2887 2.7255 -0.5163 39 1 6.0243 1.6042 1.8987 40 1 7.5860 1.3118 1.4078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:53 Heat of formation + Delta-G solvation = -30.143451 kcal Electronic energy + Delta-G solvation = -22495.853322 eV Core-core repulsion = 19118.764562 eV Total energy + Delta-G solvation = -3377.088760 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.90739 -39.57496 -36.33770 -35.47908 -34.09438 -32.11199 -31.74448 -30.45157 -29.75691 -27.28360 -24.90285 -24.28036 -23.09724 -22.21844 -20.76407 -19.88909 -19.00813 -17.31874 -16.73105 -16.40455 -16.30715 -15.69401 -15.20919 -14.77212 -14.25733 -14.11161 -13.81732 -13.47082 -13.33250 -13.00690 -12.78141 -12.75680 -12.44817 -11.93088 -11.81160 -11.66618 -11.61835 -11.38389 -11.15062 -10.94236 -10.48690 -10.44898 -10.42056 -10.38869 -10.05321 -9.90995 -9.48479 -8.79117 -8.69869 -8.41878 -8.04794 -6.42781 -4.51421 1.94449 2.67823 2.91035 3.14230 3.19778 3.20233 3.39212 3.63446 4.16476 4.88332 4.92716 4.92990 4.98463 5.01747 5.25173 5.28497 5.34051 5.72184 5.73855 5.75076 5.91531 5.93372 5.97989 6.04223 6.05457 6.20439 6.27593 6.64083 6.71938 6.74428 6.82024 6.92885 7.23370 7.29653 7.31652 7.47618 7.62111 7.67705 7.81665 8.18868 8.42948 8.51720 9.15771 10.65151 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013454 B = 0.005861 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.653624 B = 4776.039760 C = 6089.503377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.358 6.358 4 C 0.552 3.448 5 O -0.536 6.536 6 C -0.319 4.319 7 C 0.150 3.850 8 N -0.304 5.304 9 C 0.276 3.724 10 H 0.074 0.926 11 C -0.551 4.551 12 H 0.070 0.930 13 C 0.077 3.923 14 N -0.877 5.877 15 Si 0.906 3.094 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.271 1.271 19 C -0.121 4.121 20 C -0.150 4.150 21 N -0.286 5.286 22 C 0.118 3.882 23 C 0.142 3.858 24 N -0.838 5.838 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.183 0.817 31 H 0.271 0.729 32 H 0.095 0.905 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.038 0.962 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.343 0.657 40 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 -12.533 -2.848 12.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.275 6.275 4 C 0.399 3.601 5 O -0.428 6.428 6 C -0.333 4.333 7 C -0.008 4.008 8 N -0.077 5.077 9 C 0.178 3.822 10 H 0.092 0.908 11 C -0.590 4.590 12 H 0.088 0.912 13 C -0.129 4.129 14 N -0.512 5.512 15 Si 0.732 3.268 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.160 4.160 20 C -0.208 4.208 21 N -0.107 5.107 22 C -0.050 4.050 23 C 0.010 3.990 24 N -0.368 5.368 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.200 0.800 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.155 0.845 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.663 -10.621 -2.802 11.004 hybrid contribution -1.800 -1.444 0.191 2.315 sum -2.463 -12.065 -2.611 12.588 Atomic orbital electron populations 1.21801 0.92960 1.02559 1.03662 1.22900 0.95052 0.80800 1.02153 1.86596 1.24556 1.31486 1.84829 1.20143 0.79737 0.88714 0.71471 1.90719 1.60230 1.42457 1.49344 1.19171 0.93196 0.89998 1.30886 1.23136 0.97904 0.86601 0.93133 1.49611 1.02142 1.08860 1.47134 1.19552 0.98549 0.69452 0.94637 0.90841 1.21138 1.09066 0.93475 1.35278 0.91205 1.24864 0.97911 0.95376 0.94772 1.69940 1.36080 0.99140 1.46041 0.86416 0.83086 0.77432 0.79866 1.19850 1.20856 1.19661 1.21910 0.95719 1.03547 0.94825 1.21830 0.99004 1.01168 0.98762 1.77171 1.01628 1.08224 1.23649 1.22000 0.92598 0.92004 0.98401 1.20035 0.93358 0.94903 0.90669 1.58666 1.12532 1.52414 1.13227 0.91479 0.90601 0.91424 0.91622 0.91589 0.79954 0.91938 0.88655 0.93675 0.93508 0.93049 0.94253 0.92233 0.90152 0.84478 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 37.16 0.38 -1.01 16 2 C 0.07 0.77 6.20 37.16 0.23 1.01 16 3 O -0.36 -5.58 10.05 -40.66 -0.41 -5.98 16 4 C 0.55 9.66 7.95 34.41 0.27 9.93 16 5 O -0.54 -9.63 14.71 -19.28 -0.28 -9.91 16 6 C -0.32 -6.05 6.13 -105.08 -0.64 -6.69 16 7 C 0.15 2.96 10.17 -16.55 -0.17 2.80 16 8 N -0.30 -6.61 3.02 -55.42 -0.17 -6.78 16 9 C 0.28 6.48 2.55 -69.08 -0.18 6.31 16 10 H 0.07 1.95 8.09 -51.93 -0.42 1.53 16 11 C -0.55 -13.61 8.26 -34.44 -0.28 -13.89 16 12 H 0.07 1.68 6.57 -52.49 -0.34 1.34 16 13 C 0.08 1.91 5.16 -17.82 -0.09 1.81 16 14 N -0.88 -22.72 12.15 55.43 0.67 -22.05 16 15 Si 0.91 19.41 29.55 -169.99 -5.02 14.39 16 16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 C -0.12 -2.61 5.50 -26.73 -0.15 -2.76 16 20 C -0.15 -2.91 9.85 37.16 0.37 -2.55 16 21 N -0.29 -6.16 11.75 33.90 0.40 -5.76 16 22 C 0.12 2.28 6.78 -82.01 -0.56 1.73 16 23 C 0.14 2.29 6.82 -4.98 -0.03 2.26 16 24 N -0.84 -12.44 9.61 -11.41 -0.11 -12.55 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.18 3.29 7.42 -52.49 -0.39 2.90 16 31 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.10 2.22 6.79 -51.93 -0.35 1.87 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.93 6.98 -51.93 -0.36 0.56 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.94 6.56 -51.93 -0.34 0.60 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.34 5.22 8.99 -39.29 -0.35 4.87 16 40 H 0.34 3.98 9.08 -39.29 -0.36 3.63 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -27.59 339.86 -6.51 -34.09 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -5.86 Total: 10.49 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -0.85 Total: -1.05 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.79 Total: -47.14 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.69 Total: -15.90 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.59 -6.51 -34.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.951 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds