Wall clock time and date at job start Tue Mar 31 2020 05:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45197 * 109.47037 * 2 1 4 4 C 1.34763 * 116.99622 * 180.02562 * 3 2 1 5 5 O 1.21523 * 120.00167 * 0.02562 * 4 3 2 6 6 C 1.47287 * 119.99570 * 180.02562 * 4 3 2 7 7 C 1.38120 * 126.42950 * 0.27715 * 6 4 3 8 8 N 1.34227 * 107.40640 * 180.14582 * 7 6 4 9 9 C 1.46506 * 125.73998 * 179.88034 * 8 7 6 10 10 H 1.09004 * 109.46980 * 154.71803 * 9 8 7 11 11 C 1.50699 * 109.47078 * 34.71842 * 9 8 7 12 12 H 1.08000 * 119.99982 * 354.56717 * 11 9 8 13 13 C 1.37879 * 119.99713 * 174.56870 * 11 9 8 14 14 N 1.31520 * 119.99914 * 350.68505 * 13 11 9 15 15 Si 1.86799 * 119.99894 * 170.69056 * 13 11 9 16 16 H 1.48498 * 109.47008 * 59.99773 * 15 13 11 17 17 H 1.48503 * 109.47217 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47265 * 299.99743 * 15 13 11 19 19 C 1.53006 * 109.47086 * 274.71555 * 9 8 7 20 20 C 1.53002 * 109.47153 * 294.61187 * 19 9 8 21 21 N 1.39922 * 108.51427 * 359.62076 * 8 7 6 22 22 C 1.30437 * 108.92130 * 0.23839 * 21 8 7 23 23 C 1.50696 * 125.99467 * 179.97438 * 22 21 8 24 24 N 1.46895 * 109.47390 * 90.02474 * 23 22 21 25 25 H 1.09005 * 109.46922 * 59.99888 * 1 2 3 26 26 H 1.08997 * 109.46803 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46886 * 299.99727 * 1 2 3 28 28 H 1.09000 * 109.46886 * 240.00273 * 2 1 3 29 29 H 1.09002 * 109.47261 * 120.00516 * 2 1 3 30 30 H 1.08000 * 126.30078 * 0.04432 * 7 6 4 31 31 H 0.96995 * 119.99425 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.46684 * 174.61432 * 19 9 8 33 33 H 1.09001 * 109.46845 * 54.61221 * 19 9 8 34 34 H 1.08999 * 109.46583 * 55.68378 * 20 19 9 35 35 H 1.09001 * 109.46807 * 295.68480 * 20 19 9 36 36 H 1.08997 * 109.46717 * 175.68443 * 20 19 9 37 37 H 1.09002 * 109.46898 * 210.02693 * 23 22 21 38 38 H 1.09003 * 109.46977 * 330.02263 * 23 22 21 39 39 H 1.00901 * 111.00214 * 56.04547 * 24 23 22 40 40 H 1.00902 * 111.00055 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5454 -0.0005 5 8 4.0903 0.5817 -0.0015 6 6 3.9130 2.9065 0.0000 7 6 3.1995 4.0892 0.0064 8 7 4.0888 5.0946 0.0012 9 6 3.7650 6.5234 0.0026 10 1 4.5935 7.0832 0.4368 11 6 2.5196 6.7554 0.8187 12 1 1.9699 5.9149 1.2160 13 6 2.0819 8.0408 1.0582 14 7 2.8415 9.0649 0.7359 15 14 0.4100 8.3275 1.8406 16 1 0.3712 7.6805 3.1766 17 1 0.1774 9.7865 1.9908 18 1 -0.6474 7.7436 0.9769 19 6 3.5287 6.9942 -1.4339 20 6 4.8320 6.8839 -2.2277 21 7 5.3770 4.5484 0.0002 22 6 5.2847 3.2473 -0.0005 23 6 6.4383 2.2776 -0.0022 24 7 6.8141 1.9612 1.3821 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.1240 4.1870 0.0127 31 1 2.5337 9.9691 0.9048 32 1 3.1949 8.0318 -1.4258 33 1 2.7656 6.3706 -1.8996 34 1 5.2061 5.8617 -2.1715 35 1 5.5719 7.5653 -1.8078 36 1 4.6462 7.1461 -3.2692 37 1 6.1433 1.3630 -0.5168 38 1 7.2887 2.7255 -0.5163 39 1 6.0243 1.6042 1.8987 40 1 7.5860 1.3118 1.4078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:52 Heat of formation + Delta-G solvation = -47.159494 kcal Electronic energy + Delta-G solvation = -22496.591193 eV Core-core repulsion = 19118.764562 eV Total energy + Delta-G solvation = -3377.826631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.44309 -40.90434 -37.69226 -37.07449 -35.49350 -33.91526 -32.73869 -32.01612 -31.19326 -29.00873 -26.36807 -25.77785 -24.46636 -23.51069 -22.18386 -21.53271 -20.51709 -18.74791 -18.48570 -17.88032 -17.50813 -16.99626 -16.83975 -16.24088 -15.88450 -15.53515 -14.98656 -14.94451 -14.68748 -14.39015 -14.31060 -13.97143 -13.59768 -13.52834 -13.40519 -12.99327 -12.85157 -12.79955 -12.63614 -12.42295 -12.16469 -12.15967 -11.96636 -11.76716 -11.44182 -11.35920 -11.27981 -10.63296 -10.35699 -9.68956 -9.57006 -8.32487 -6.47539 0.48025 1.13568 1.43669 1.45515 1.50797 1.57578 1.93807 2.20122 2.38026 3.00728 3.48390 3.69501 3.93784 4.08015 4.09820 4.16449 4.26622 4.35612 4.36747 4.41459 4.47329 4.53434 4.65649 4.73699 4.89839 4.97709 4.98115 5.10173 5.16621 5.19587 5.32731 5.45688 5.53074 5.53442 5.63712 5.85229 6.07635 6.11035 6.58751 6.61669 6.78799 6.90464 7.23166 8.75621 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013454 B = 0.005861 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.653624 B = 4776.039760 C = 6089.503377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.363 6.363 4 C 0.556 3.444 5 O -0.541 6.541 6 C -0.319 4.319 7 C 0.146 3.854 8 N -0.320 5.320 9 C 0.285 3.715 10 H 0.033 0.967 11 C -0.564 4.564 12 H 0.073 0.927 13 C 0.034 3.966 14 N -0.906 5.906 15 Si 0.966 3.034 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.260 1.260 19 C -0.112 4.112 20 C -0.139 4.139 21 N -0.316 5.316 22 C 0.118 3.882 23 C 0.147 3.853 24 N -0.842 5.842 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.196 0.804 31 H 0.272 0.728 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.341 0.659 40 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 -14.193 -3.043 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 O -0.280 6.280 4 C 0.403 3.597 5 O -0.433 6.433 6 C -0.333 4.333 7 C -0.011 4.011 8 N -0.093 5.093 9 C 0.186 3.814 10 H 0.051 0.949 11 C -0.602 4.602 12 H 0.091 0.909 13 C -0.169 4.169 14 N -0.542 5.542 15 Si 0.790 3.210 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.185 1.185 19 C -0.151 4.151 20 C -0.197 4.197 21 N -0.137 5.137 22 C -0.050 4.050 23 C 0.015 3.985 24 N -0.375 5.375 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.213 0.787 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.153 0.847 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.870 -12.316 -3.003 12.814 hybrid contribution -1.400 -1.049 0.272 1.770 sum -3.270 -13.365 -2.731 14.027 Atomic orbital electron populations 1.21834 0.90661 1.04367 1.03529 1.23281 0.96834 0.78949 1.02657 1.86583 1.23168 1.33944 1.84280 1.19860 0.80504 0.87895 0.71400 1.90710 1.60639 1.42388 1.49571 1.19365 0.93143 0.90713 1.30093 1.23416 0.98384 0.86420 0.92832 1.49391 1.02741 1.08490 1.48727 1.19221 0.96566 0.70325 0.95319 0.94924 1.21412 1.09457 0.93784 1.35529 0.90922 1.25623 1.00926 0.95097 0.95205 1.70048 1.37566 0.99462 1.47103 0.85474 0.79333 0.77227 0.78937 1.19924 1.20736 1.18468 1.21752 0.96949 1.02259 0.94183 1.21711 0.97526 1.00594 0.99825 1.77140 1.01820 1.09452 1.25289 1.22563 0.93872 0.91759 0.96843 1.20064 0.92597 0.94304 0.91513 1.58620 1.13110 1.53343 1.12386 0.91492 0.87801 0.91648 0.91073 0.91171 0.78676 0.91898 0.90570 0.92923 0.94041 0.93934 0.91687 0.91651 0.89314 0.84683 0.82604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.29 71.98 0.74 -1.54 16 2 C 0.06 1.21 6.20 71.98 0.45 1.66 16 3 O -0.36 -10.70 10.05 -56.74 -0.57 -11.27 16 4 C 0.56 18.68 7.95 70.20 0.56 19.24 16 5 O -0.54 -18.50 14.71 19.76 0.29 -18.20 16 6 C -0.32 -11.88 6.13 -20.16 -0.12 -12.01 16 7 C 0.15 5.73 10.17 84.30 0.86 6.59 16 8 N -0.32 -14.09 3.02 -329.25 -0.99 -15.09 16 9 C 0.28 13.71 2.55 44.25 0.11 13.83 16 10 H 0.03 1.82 8.09 -2.38 -0.02 1.80 16 11 C -0.56 -28.10 8.26 25.60 0.21 -27.89 16 12 H 0.07 3.50 6.57 -2.91 -0.02 3.48 16 13 C 0.03 1.72 5.16 84.65 0.44 2.16 16 14 N -0.91 -47.79 12.15 21.45 0.26 -47.53 16 15 Si 0.97 39.49 29.55 68.60 2.03 41.52 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 18 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 19 C -0.11 -4.91 5.50 30.60 0.17 -4.74 16 20 C -0.14 -5.40 9.85 71.98 0.71 -4.69 16 21 N -0.32 -13.75 11.75 -46.65 -0.55 -14.30 16 22 C 0.12 4.50 6.78 43.53 0.30 4.79 16 23 C 0.15 4.57 6.82 85.56 0.58 5.15 16 24 N -0.84 -23.86 9.61 -190.02 -1.83 -25.68 16 25 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.20 6.93 7.42 -2.91 -0.02 6.91 16 31 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 32 H 0.08 3.62 6.79 -2.39 -0.02 3.60 16 33 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.04 1.64 6.98 -2.39 -0.02 1.62 16 35 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.07 1.96 6.56 -2.39 -0.02 1.94 16 38 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.34 9.96 8.99 -89.69 -0.81 9.15 16 40 H 0.36 7.75 9.08 -89.69 -0.81 6.94 16 Total: -1.00 -58.84 339.86 3.08 -55.76 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -0.55 Total: 32.26 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 5.00 Total: 2.54 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -3.11 Total: -102.60 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.28 Total: -29.48 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -58.84 3.08 -55.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.599 kcal (2) G-P(sol) polarization free energy of solvation -58.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds