Wall clock time and date at job start Tue Mar 31 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.51014 * 2 1 4 4 C 1.53103 * 109.50848 * 239.91727 * 2 1 3 5 5 N 1.47007 * 109.25922 * 183.17230 * 4 2 1 6 6 C 1.46905 * 111.00086 * 182.38966 * 5 4 2 7 7 C 1.52993 * 109.47076 * 169.99883 * 6 5 4 8 8 C 1.50704 * 109.47083 * 180.02562 * 7 6 5 9 9 N 1.31127 * 126.05749 * 89.99780 * 8 7 6 10 10 N 1.28682 * 109.58711 * 179.76192 * 9 8 7 11 11 C 1.32852 * 109.00828 * 0.39352 * 10 9 8 12 12 C 1.39903 * 126.46512 * 179.88392 * 11 10 9 13 13 H 1.08006 * 119.99969 * 187.87666 * 12 11 10 14 14 C 1.40342 * 120.00312 * 7.87882 * 12 11 10 15 15 N 1.30626 * 120.00274 * 191.27972 * 14 12 11 16 16 Si 1.86803 * 120.00185 * 11.27643 * 14 12 11 17 17 H 1.48500 * 109.47144 * 270.00342 * 16 14 12 18 18 H 1.48496 * 109.47407 * 150.00141 * 16 14 12 19 19 H 1.48503 * 109.46671 * 30.00187 * 16 14 12 20 20 O 1.34307 * 126.05694 * 270.00130 * 8 7 6 21 21 C 1.47013 * 110.75241 * 58.61666 * 5 4 2 22 22 C 1.53096 * 109.25862 * 301.38023 * 21 5 4 23 23 H 1.09001 * 109.50980 * 176.78367 * 22 21 5 24 24 C 1.53001 * 109.54403 * 296.89637 * 22 21 5 25 25 O 1.43014 * 109.25776 * 56.85107 * 22 21 5 26 26 H 1.08995 * 109.47188 * 180.08180 * 1 2 3 27 27 H 1.08998 * 109.47113 * 300.08683 * 1 2 3 28 28 H 1.09007 * 109.47062 * 60.08184 * 1 2 3 29 29 H 1.09001 * 109.50246 * 63.23710 * 4 2 1 30 30 H 1.09003 * 109.53744 * 303.13013 * 4 2 1 31 31 H 1.09001 * 109.46942 * 50.00130 * 6 5 4 32 32 H 1.08999 * 109.46890 * 290.00418 * 6 5 4 33 33 H 1.09001 * 109.47034 * 60.00303 * 7 6 5 34 34 H 1.08999 * 109.47698 * 300.00040 * 7 6 5 35 35 H 0.97007 * 119.99863 * 354.77186 * 15 14 12 36 36 H 1.08999 * 109.50820 * 61.31707 * 21 5 4 37 37 H 1.09005 * 109.50843 * 181.44992 * 21 5 4 38 38 H 1.09000 * 109.47014 * 179.80237 * 24 22 21 39 39 H 1.09003 * 109.46746 * 299.80222 * 24 22 21 40 40 H 1.09003 * 109.47454 * 59.79873 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2488 5 7 3.5093 -0.7870 -1.2053 6 6 4.0446 -1.4249 -2.4155 7 6 5.5643 -1.2518 -2.4536 8 6 6.1134 -1.9056 -3.6954 9 7 6.2776 -1.3305 -4.8623 10 7 6.7722 -2.1777 -5.6951 11 6 6.9354 -3.3440 -5.0802 12 6 7.4451 -4.5179 -5.6455 13 1 7.4155 -5.4427 -5.0884 14 6 7.9951 -4.4937 -6.9364 15 7 8.2679 -5.6135 -7.5513 16 14 8.3371 -2.8602 -7.7757 17 1 7.1397 -2.4398 -8.5469 18 1 9.4921 -3.0092 -8.6970 19 1 8.6511 -1.8331 -6.7502 20 8 6.5213 -3.1808 -3.8030 21 6 3.9648 -1.4869 0.0046 22 6 3.4344 -0.7559 1.2407 23 1 3.7216 -1.3032 2.1385 24 6 4.0229 0.6555 1.2925 25 8 2.0084 -0.6762 1.1659 26 1 -0.3633 -1.0276 0.0015 27 1 -0.3633 0.5152 0.8892 28 1 -0.3633 0.5126 -0.8908 29 1 1.7267 -0.1789 -2.1391 30 1 1.6338 -1.7340 -1.2771 31 1 3.6037 -0.9594 -3.2970 32 1 3.8000 -2.4870 -2.4048 33 1 6.0052 -1.7173 -1.5721 34 1 5.8089 -0.1896 -2.4643 35 1 8.1619 -6.4593 -7.0882 36 1 3.5881 -2.5097 -0.0030 37 1 5.0545 -1.4998 0.0291 38 1 3.6417 1.1760 2.1711 39 1 5.1097 0.5940 1.3496 40 1 3.7366 1.2018 0.3938 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258004313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:57 Heat of formation + Delta-G solvation = -34.509973 kcal Electronic energy + Delta-G solvation = -22155.201069 eV Core-core repulsion = 18777.922962 eV Total energy + Delta-G solvation = -3377.278107 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.10781 -40.15588 -36.42344 -34.39176 -34.13178 -33.58958 -32.34665 -30.38282 -29.24376 -27.07119 -26.11907 -24.45214 -23.09994 -22.01013 -21.46271 -20.37365 -19.61448 -18.62134 -16.69814 -16.67069 -15.84560 -15.60717 -15.42266 -15.22386 -14.78247 -14.37968 -14.07632 -13.75114 -13.43756 -13.17550 -13.01568 -12.67846 -12.57496 -12.38393 -12.08427 -12.05050 -11.84253 -11.49034 -11.29035 -11.22628 -11.11083 -10.76379 -10.60259 -10.44450 -10.20894 -9.73592 -9.68668 -9.40393 -8.69205 -8.48931 -8.27850 -7.67248 -5.18767 2.62789 3.37702 3.44236 3.51317 3.62179 3.84343 3.92409 4.08747 4.23007 4.58202 4.67235 4.79663 4.86566 4.88834 4.97471 5.13299 5.16732 5.21688 5.29608 5.37159 5.41592 5.50230 5.56375 5.57924 5.69149 5.75055 5.77458 5.88238 5.89673 6.08202 6.15627 6.18210 6.38740 6.81990 6.85280 7.00777 7.05438 7.17446 7.18567 7.75212 7.86496 8.24111 9.71436 10.01230 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037653 B = 0.003307 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.453454 B = 8466.119942 C = 8530.233654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.024 3.976 5 N -0.532 5.532 6 C 0.060 3.940 7 C 0.010 3.990 8 C 0.027 3.973 9 N -0.256 5.256 10 N -0.437 5.437 11 C 0.289 3.711 12 C -0.470 4.470 13 H 0.093 0.907 14 C 0.065 3.935 15 N -0.785 5.785 16 Si 1.104 2.896 17 H -0.273 1.273 18 H -0.305 1.305 19 H -0.253 1.253 20 O -0.265 6.265 21 C 0.017 3.983 22 C 0.091 3.909 23 H 0.103 0.897 24 C -0.176 4.176 25 O -0.380 6.380 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.289 0.711 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.399 8.587 15.160 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.088 0.912 4 C -0.105 4.105 5 N -0.257 5.257 6 C -0.068 4.068 7 C -0.029 4.029 8 C -0.186 4.186 9 N -0.105 5.105 10 N -0.294 5.294 11 C 0.107 3.893 12 C -0.506 4.506 13 H 0.111 0.889 14 C -0.159 4.159 15 N -0.409 5.409 16 Si 0.930 3.070 17 H -0.199 1.199 18 H -0.234 1.234 19 H -0.178 1.178 20 O -0.154 6.154 21 C -0.111 4.111 22 C 0.033 3.967 23 H 0.121 0.879 24 C -0.233 4.233 25 O -0.299 6.299 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.827 10.433 12.986 19.340 hybrid contribution -0.665 -2.839 2.150 3.623 sum -10.492 7.594 15.137 19.921 Atomic orbital electron populations 1.21749 0.92988 1.02905 1.02579 1.22151 0.94535 0.96067 0.84357 0.91174 1.22817 0.87936 1.00304 0.99403 1.62182 1.08540 1.52813 1.02167 1.22172 0.95059 0.97394 0.92212 1.19469 0.93155 1.00197 0.90069 1.26380 1.12092 0.81396 0.98723 1.73852 1.11048 1.27204 0.98389 1.74548 1.31158 0.99237 1.24421 1.23777 0.92223 0.96115 0.77182 1.19540 1.36376 0.92375 1.02292 0.88936 1.27500 0.89433 1.05869 0.93120 1.70586 1.32846 0.99835 1.37585 0.82932 0.76714 0.71693 0.75675 1.19855 1.23443 1.17767 1.84730 1.67670 1.30477 1.32520 1.22889 1.01678 0.96043 0.90515 1.22252 0.80629 0.96526 0.97289 0.87898 1.22287 1.01417 0.96923 1.02672 1.88018 1.20903 1.78197 1.42824 0.91958 0.91660 0.90907 0.89550 0.93995 0.89810 0.94395 0.90685 0.88296 0.89893 0.93908 0.89106 0.92565 0.91561 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.57 37.16 0.36 -0.80 16 2 C 0.09 0.86 3.03 -26.68 -0.08 0.78 16 3 H 0.07 0.69 6.49 -51.93 -0.34 0.35 16 4 C 0.02 0.26 4.93 -3.71 -0.02 0.24 16 5 N -0.53 -6.46 4.10 -234.31 -0.96 -7.42 16 6 C 0.06 0.87 4.94 -3.82 -0.02 0.86 16 7 C 0.01 0.17 5.78 -27.88 -0.16 0.01 16 8 C 0.03 0.62 7.73 -12.58 -0.10 0.52 16 9 N -0.26 -6.54 12.25 32.68 0.40 -6.14 16 10 N -0.44 -12.12 7.53 30.64 0.23 -11.89 16 11 C 0.29 7.97 7.54 -16.49 -0.12 7.85 16 12 C -0.47 -12.85 9.86 -38.17 -0.38 -13.22 16 13 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 14 C 0.07 1.73 5.52 -17.27 -0.10 1.64 16 15 N -0.79 -20.54 13.64 55.57 0.76 -19.78 16 16 Si 1.10 26.85 26.41 -169.99 -4.49 22.36 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.31 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.25 -6.41 6.25 56.52 0.35 -6.06 16 20 O -0.27 -6.78 10.90 3.00 0.03 -6.75 16 21 C 0.02 0.19 4.85 -3.71 -0.02 0.17 16 22 C 0.09 0.91 3.92 -26.68 -0.10 0.80 16 23 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 24 C -0.18 -1.59 8.89 37.16 0.33 -1.26 16 25 O -0.38 -4.35 10.29 -35.23 -0.36 -4.71 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.27 8.04 -51.93 -0.42 0.86 16 32 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.07 1.09 6.52 -51.93 -0.34 0.76 16 34 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.29 7.17 8.73 -40.82 -0.36 6.81 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.96 6.38 -51.93 -0.33 0.63 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.74 6.13 -51.93 -0.32 0.42 16 LS Contribution 321.95 15.07 4.85 4.85 Total: -1.00 -30.26 321.95 -5.96 -36.22 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -6.01 Total: -4.33 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.41 Total: -2.41 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.43 Total: -45.23 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.33 Total: -11.45 kcal Atomic # 14 Polarization: 26.85 SS G_CDS: -4.49 Total: 22.36 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.26 -5.96 -36.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258004313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.712 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds