Wall clock time and date at job start Tue Mar 31 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.51014 * 2 1 4 4 C 1.53103 * 109.50848 * 239.91727 * 2 1 3 5 5 N 1.47007 * 109.25922 * 183.17230 * 4 2 1 6 6 C 1.46905 * 111.00086 * 182.38966 * 5 4 2 7 7 C 1.52993 * 109.47076 * 169.99883 * 6 5 4 8 8 C 1.50704 * 109.47083 * 180.02562 * 7 6 5 9 9 N 1.31127 * 126.05749 * 89.99780 * 8 7 6 10 10 N 1.28682 * 109.58711 * 179.76192 * 9 8 7 11 11 C 1.32852 * 109.00828 * 0.39352 * 10 9 8 12 12 C 1.39903 * 126.46512 * 179.88392 * 11 10 9 13 13 H 1.08006 * 119.99969 * 187.87666 * 12 11 10 14 14 C 1.40342 * 120.00312 * 7.87882 * 12 11 10 15 15 N 1.30626 * 120.00274 * 191.27972 * 14 12 11 16 16 Si 1.86803 * 120.00185 * 11.27643 * 14 12 11 17 17 H 1.48500 * 109.47144 * 270.00342 * 16 14 12 18 18 H 1.48496 * 109.47407 * 150.00141 * 16 14 12 19 19 H 1.48503 * 109.46671 * 30.00187 * 16 14 12 20 20 O 1.34307 * 126.05694 * 270.00130 * 8 7 6 21 21 C 1.47013 * 110.75241 * 58.61666 * 5 4 2 22 22 C 1.53096 * 109.25862 * 301.38023 * 21 5 4 23 23 H 1.09001 * 109.50980 * 176.78367 * 22 21 5 24 24 C 1.53001 * 109.54403 * 296.89637 * 22 21 5 25 25 O 1.43014 * 109.25776 * 56.85107 * 22 21 5 26 26 H 1.08995 * 109.47188 * 180.08180 * 1 2 3 27 27 H 1.08998 * 109.47113 * 300.08683 * 1 2 3 28 28 H 1.09007 * 109.47062 * 60.08184 * 1 2 3 29 29 H 1.09001 * 109.50246 * 63.23710 * 4 2 1 30 30 H 1.09003 * 109.53744 * 303.13013 * 4 2 1 31 31 H 1.09001 * 109.46942 * 50.00130 * 6 5 4 32 32 H 1.08999 * 109.46890 * 290.00418 * 6 5 4 33 33 H 1.09001 * 109.47034 * 60.00303 * 7 6 5 34 34 H 1.08999 * 109.47698 * 300.00040 * 7 6 5 35 35 H 0.97007 * 119.99863 * 354.77186 * 15 14 12 36 36 H 1.08999 * 109.50820 * 61.31707 * 21 5 4 37 37 H 1.09005 * 109.50843 * 181.44992 * 21 5 4 38 38 H 1.09000 * 109.47014 * 179.80237 * 24 22 21 39 39 H 1.09003 * 109.46746 * 299.80222 * 24 22 21 40 40 H 1.09003 * 109.47454 * 59.79873 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2488 5 7 3.5093 -0.7870 -1.2053 6 6 4.0446 -1.4249 -2.4155 7 6 5.5643 -1.2518 -2.4536 8 6 6.1134 -1.9056 -3.6954 9 7 6.2776 -1.3305 -4.8623 10 7 6.7722 -2.1777 -5.6951 11 6 6.9354 -3.3440 -5.0802 12 6 7.4451 -4.5179 -5.6455 13 1 7.4155 -5.4427 -5.0884 14 6 7.9951 -4.4937 -6.9364 15 7 8.2679 -5.6135 -7.5513 16 14 8.3371 -2.8602 -7.7757 17 1 7.1397 -2.4398 -8.5469 18 1 9.4921 -3.0092 -8.6970 19 1 8.6511 -1.8331 -6.7502 20 8 6.5213 -3.1808 -3.8030 21 6 3.9648 -1.4869 0.0046 22 6 3.4344 -0.7559 1.2407 23 1 3.7216 -1.3032 2.1385 24 6 4.0229 0.6555 1.2925 25 8 2.0084 -0.6762 1.1659 26 1 -0.3633 -1.0276 0.0015 27 1 -0.3633 0.5152 0.8892 28 1 -0.3633 0.5126 -0.8908 29 1 1.7267 -0.1789 -2.1391 30 1 1.6338 -1.7340 -1.2771 31 1 3.6037 -0.9594 -3.2970 32 1 3.8000 -2.4870 -2.4048 33 1 6.0052 -1.7173 -1.5721 34 1 5.8089 -0.1896 -2.4643 35 1 8.1619 -6.4593 -7.0882 36 1 3.5881 -2.5097 -0.0030 37 1 5.0545 -1.4998 0.0291 38 1 3.6417 1.1760 2.1711 39 1 5.1097 0.5940 1.3496 40 1 3.7366 1.2018 0.3938 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258004313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:57 Heat of formation + Delta-G solvation = -58.195072 kcal Electronic energy + Delta-G solvation = -22156.228132 eV Core-core repulsion = 18777.922962 eV Total energy + Delta-G solvation = -3378.305170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.12081 -41.02061 -37.47031 -36.42081 -36.13946 -34.35471 -33.79295 -31.65191 -30.60783 -27.88438 -27.72847 -25.85973 -23.98379 -23.72342 -23.07669 -21.97120 -20.66482 -20.43331 -17.93523 -17.74786 -17.43915 -17.21857 -16.50675 -16.46621 -15.99279 -15.75478 -15.56137 -15.33854 -14.99329 -14.40712 -14.17570 -13.96128 -13.53433 -13.29099 -13.22743 -13.10621 -12.97147 -12.79070 -12.72808 -12.59888 -12.44648 -12.21258 -12.08152 -11.83095 -11.66315 -11.41123 -11.23858 -10.70412 -10.56291 -10.26652 -9.73420 -9.48020 -7.26017 0.66825 1.44192 1.53229 1.85025 1.92839 2.04829 2.30093 2.68724 2.78396 2.84708 3.70027 3.72522 3.82430 3.89283 4.00839 4.10689 4.21589 4.23282 4.30796 4.34659 4.44111 4.48185 4.63046 4.64409 4.72033 4.74675 4.81720 4.87680 5.01439 5.05807 5.12010 5.12578 5.14632 5.26205 5.34804 5.44302 5.68767 5.77740 5.81692 5.89724 6.18516 6.27448 7.68049 8.00175 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037653 B = 0.003307 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.453454 B = 8466.119942 C = 8530.233654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.087 3.913 3 H 0.075 0.925 4 C 0.022 3.978 5 N -0.527 5.527 6 C 0.071 3.929 7 C 0.013 3.987 8 C 0.059 3.941 9 N -0.290 5.290 10 N -0.458 5.458 11 C 0.273 3.727 12 C -0.490 4.490 13 H 0.087 0.913 14 C 0.046 3.954 15 N -0.791 5.791 16 Si 1.135 2.865 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.271 1.271 20 O -0.274 6.274 21 C 0.014 3.986 22 C 0.089 3.911 23 H 0.118 0.882 24 C -0.170 4.170 25 O -0.395 6.395 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.032 0.968 31 H 0.077 0.923 32 H 0.024 0.976 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.293 0.707 36 H 0.032 0.968 37 H 0.099 0.901 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.892 9.777 16.468 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.029 3.971 3 H 0.093 0.907 4 C -0.106 4.106 5 N -0.252 5.252 6 C -0.058 4.058 7 C -0.026 4.026 8 C -0.155 4.155 9 N -0.136 5.136 10 N -0.314 5.314 11 C 0.089 3.911 12 C -0.526 4.526 13 H 0.105 0.895 14 C -0.177 4.177 15 N -0.415 5.415 16 Si 0.960 3.040 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 O -0.162 6.162 21 C -0.114 4.114 22 C 0.032 3.968 23 H 0.136 0.864 24 C -0.227 4.227 25 O -0.315 6.315 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.116 0.884 34 H 0.135 0.865 35 H 0.105 0.895 36 H 0.050 0.950 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.322 11.628 14.284 21.113 hybrid contribution -0.594 -3.164 1.911 3.744 sum -10.916 8.464 16.195 21.285 Atomic orbital electron populations 1.21761 0.91582 1.02890 1.03681 1.22246 0.95648 0.95844 0.83315 0.90745 1.22907 0.87016 1.00122 1.00565 1.62184 1.09347 1.52195 1.01456 1.21928 0.93765 0.96718 0.93369 1.19800 0.94168 1.00721 0.87885 1.27679 1.08106 0.80093 0.99651 1.73813 1.13122 1.27326 0.99349 1.74518 1.31944 0.99523 1.25373 1.23907 0.93025 0.96344 0.77849 1.19605 1.37720 0.92324 1.02998 0.89525 1.28066 0.89255 1.07102 0.93236 1.70576 1.33155 1.00062 1.37685 0.82500 0.77042 0.69525 0.74983 1.20431 1.21050 1.19727 1.84747 1.67543 1.31922 1.32007 1.22984 1.02191 0.95614 0.90593 1.22381 0.80110 0.97192 0.97146 0.86445 1.22233 1.01926 0.96077 1.02483 1.88011 1.21682 1.78460 1.43362 0.92515 0.91055 0.89342 0.88746 0.94940 0.90494 0.95785 0.88383 0.86453 0.89501 0.94973 0.88284 0.91887 0.90670 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.57 71.98 0.69 -1.30 16 2 C 0.09 1.56 3.03 30.63 0.09 1.66 16 3 H 0.07 1.29 6.49 -2.39 -0.02 1.27 16 4 C 0.02 0.45 4.93 86.32 0.43 0.87 16 5 N -0.53 -11.76 4.10 -895.21 -3.67 -15.42 16 6 C 0.07 1.96 4.94 86.30 0.43 2.38 16 7 C 0.01 0.39 5.78 29.85 0.17 0.57 16 8 C 0.06 2.61 7.73 88.22 0.68 3.29 16 9 N -0.29 -14.63 12.25 -164.71 -2.02 -16.65 16 10 N -0.46 -25.42 7.53 -169.76 -1.28 -26.70 16 11 C 0.27 15.12 7.54 84.94 0.64 15.76 16 12 C -0.49 -27.05 9.86 23.19 0.23 -26.82 16 13 H 0.09 4.74 8.06 -2.91 -0.02 4.72 16 14 C 0.05 2.43 5.52 85.38 0.47 2.91 16 15 N -0.79 -41.10 13.64 21.90 0.30 -40.80 16 16 Si 1.14 54.38 26.41 68.60 1.81 56.20 16 17 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.27 -13.75 6.25 99.48 0.62 -13.13 16 20 O -0.27 -13.84 10.90 -12.19 -0.13 -13.97 16 21 C 0.01 0.29 4.85 86.31 0.42 0.71 16 22 C 0.09 1.58 3.92 30.63 0.12 1.70 16 23 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 24 C -0.17 -2.64 8.89 71.98 0.64 -2.00 16 25 O -0.40 -8.28 10.29 -148.98 -1.53 -9.81 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 2.23 8.04 -2.39 -0.02 2.21 16 32 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 33 H 0.10 2.55 6.52 -2.39 -0.02 2.54 16 34 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.29 14.50 8.73 -92.70 -0.81 13.69 16 36 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.10 1.82 6.38 -2.38 -0.02 1.81 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.12 6.13 -2.39 -0.01 1.11 16 Total: -1.00 -63.70 321.95 -0.60 -64.30 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 0.91 Total: 3.12 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 5.01 Total: -0.28 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -6.66 Total: -99.57 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -1.67 Total: -23.78 kcal Atomic # 14 Polarization: 54.38 SS G_CDS: 1.81 Total: 56.20 kcal Total: -63.70 -0.60 -64.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258004313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.109 kcal (2) G-P(sol) polarization free energy of solvation -63.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds