Wall clock time and date at job start Tue Mar 31 2020 05:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42909 * 113.99866 * 2 1 4 4 C 1.50692 * 109.47052 * 180.02562 * 3 2 1 5 5 N 1.30459 * 125.98996 * 269.95695 * 4 3 2 6 6 N 1.39930 * 108.89705 * 180.02562 * 5 4 3 7 7 C 1.46504 * 125.74882 * 179.97438 * 6 5 4 8 8 C 1.34255 * 108.49386 * 359.74996 * 6 5 4 9 9 C 1.38042 * 107.41953 * 0.39584 * 8 6 5 10 10 C 1.47423 * 126.41554 * 179.87273 * 9 8 6 11 11 O 1.21606 * 120.00121 * 147.71022 * 10 9 8 12 12 N 1.34771 * 120.00263 * 327.70664 * 10 9 8 13 13 C 1.46501 * 119.99802 * 4.38359 * 12 10 9 14 14 C 1.46503 * 120.00316 * 184.38909 * 12 10 9 15 15 H 1.08997 * 109.47124 * 0.02562 * 14 12 10 16 16 C 1.52998 * 109.47046 * 239.99854 * 14 12 10 17 17 C 1.50702 * 109.47369 * 119.99950 * 14 12 10 18 18 H 1.07999 * 119.99954 * 31.83251 * 17 14 12 19 19 C 1.37877 * 120.00272 * 211.83348 * 17 14 12 20 20 N 1.31506 * 120.00282 * 178.81213 * 19 17 14 21 21 Si 1.86803 * 119.99729 * 358.81299 * 19 17 14 22 22 H 1.48493 * 109.47209 * 87.44877 * 21 19 17 23 23 H 1.48499 * 109.46989 * 207.45319 * 21 19 17 24 24 H 1.48508 * 109.46946 * 327.44997 * 21 19 17 25 25 H 1.09002 * 109.47074 * 60.00118 * 1 2 3 26 26 H 1.09004 * 109.46861 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47114 * 299.99943 * 1 2 3 28 28 H 1.09004 * 109.46921 * 59.99723 * 3 2 1 29 29 H 1.08998 * 109.47014 * 299.99799 * 3 2 1 30 30 H 1.09000 * 109.46581 * 89.98371 * 7 6 5 31 31 H 1.08997 * 109.47144 * 209.97714 * 7 6 5 32 32 H 1.08991 * 109.47417 * 329.98145 * 7 6 5 33 33 H 1.08005 * 126.28970 * 180.23758 * 8 6 5 34 34 H 1.09013 * 109.46908 * 87.57747 * 13 12 10 35 35 H 1.08992 * 109.47703 * 327.57902 * 13 12 10 36 36 H 1.09006 * 109.47423 * 207.57190 * 13 12 10 37 37 H 1.09001 * 109.47302 * 174.47320 * 16 14 12 38 38 H 1.09002 * 109.47504 * 294.47796 * 16 14 12 39 39 H 1.09000 * 109.47082 * 54.48051 * 16 14 12 40 40 H 0.97002 * 120.00493 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2772 1.1267 1.0546 6 7 5.6104 1.0214 0.6428 7 6 6.7748 0.9305 1.5272 8 6 5.6421 1.0129 -0.6994 9 6 4.3397 1.1210 -1.1442 10 6 3.8948 1.1551 -2.5493 11 8 2.8189 0.6800 -2.8581 12 7 4.6805 1.7129 -3.4916 13 6 6.0165 2.1987 -3.1377 14 6 4.1985 1.8335 -4.8698 15 1 3.1918 1.4216 -4.9400 16 6 5.1319 1.0630 -5.8057 17 6 4.1750 3.2867 -5.2684 18 1 4.9027 3.9711 -4.8580 19 6 3.2244 3.7425 -6.1570 20 7 3.1892 5.0151 -6.4869 21 14 1.9865 2.5524 -6.8924 22 1 0.8110 2.4418 -5.9919 23 1 1.5478 3.0523 -8.2202 24 1 2.6169 1.2170 -7.0498 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6885 1.8465 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 6.9827 -0.1166 1.7475 31 1 7.6395 1.3771 1.0365 32 1 6.5685 1.4631 2.4555 33 1 6.5246 0.9380 -1.3175 34 1 6.7350 1.3837 -3.2271 35 1 6.0096 2.5660 -2.1115 36 1 6.2993 3.0078 -3.8113 37 1 4.7210 1.0701 -6.8153 38 1 6.1139 1.5360 -5.8098 39 1 5.2256 0.0339 -5.4590 40 1 2.5208 5.3357 -7.1124 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262822769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:36 Heat of formation + Delta-G solvation = -14.283799 kcal Electronic energy + Delta-G solvation = -22821.057403 eV Core-core repulsion = 19444.656369 eV Total energy + Delta-G solvation = -3376.401034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.53691 -40.24727 -38.78120 -37.07638 -34.76069 -34.57310 -32.80360 -30.78243 -29.89957 -27.86797 -27.35720 -27.20730 -26.10161 -23.89600 -22.32763 -21.12619 -20.06847 -19.11739 -17.94700 -17.68944 -17.40003 -16.97489 -16.71865 -16.40428 -16.16775 -15.90570 -15.66657 -14.97877 -14.62178 -14.35841 -14.14075 -13.85159 -13.67362 -13.49531 -13.29196 -13.21476 -13.15350 -13.09552 -12.70443 -12.56087 -12.36546 -12.19589 -11.93173 -11.76366 -11.23012 -10.82397 -10.78931 -10.61864 -10.47255 -9.69301 -9.25286 -8.34274 -6.37668 0.58801 0.91965 1.29176 1.35492 1.42394 1.43713 2.18553 2.30403 2.47691 3.01230 3.09198 3.39141 3.69934 3.97354 4.04134 4.19105 4.32564 4.41782 4.46640 4.48684 4.50711 4.55727 4.57286 4.67810 4.74485 4.77656 4.79299 4.80320 4.85632 5.01895 5.18719 5.23946 5.40026 5.58473 5.85598 5.91497 6.11980 6.21083 6.46280 6.67387 6.81893 7.27234 7.46844 8.80948 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016317 B = 0.006025 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.542611 B = 4646.035896 C = 5758.881445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.403 6.403 3 C 0.149 3.851 4 C 0.102 3.898 5 N -0.301 5.301 6 N -0.352 5.352 7 C 0.085 3.915 8 C 0.115 3.885 9 C -0.296 4.296 10 C 0.574 3.426 11 O -0.596 6.596 12 N -0.592 5.592 13 C 0.072 3.928 14 C 0.226 3.774 15 H 0.034 0.966 16 C -0.140 4.140 17 C -0.517 4.517 18 H 0.056 0.944 19 C 0.029 3.971 20 N -0.936 5.936 21 Si 0.921 3.079 22 H -0.287 1.287 23 H -0.277 1.277 24 H -0.244 1.244 25 H 0.035 0.965 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.098 0.902 33 H 0.231 0.769 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.452 -8.987 15.477 19.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.321 6.321 3 C 0.070 3.930 4 C -0.065 4.065 5 N -0.125 5.125 6 N -0.131 5.131 7 C -0.053 4.053 8 C -0.037 4.037 9 C -0.311 4.311 10 C 0.364 3.636 11 O -0.478 6.478 12 N -0.322 5.322 13 C -0.070 4.070 14 C 0.124 3.876 15 H 0.052 0.948 16 C -0.198 4.198 17 C -0.556 4.556 18 H 0.074 0.926 19 C -0.170 4.170 20 N -0.576 5.576 21 Si 0.746 3.254 22 H -0.214 1.214 23 H -0.202 1.202 24 H -0.168 1.168 25 H 0.054 0.946 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.147 0.853 32 H 0.117 0.883 33 H 0.247 0.753 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.115 -9.269 16.572 20.650 hybrid contribution -1.212 0.294 -1.575 2.009 sum 6.903 -8.975 14.997 18.792 Atomic orbital electron populations 1.22927 0.79003 1.04043 1.00703 1.87869 1.21779 1.26969 1.95523 1.20486 0.85585 0.85679 1.01218 1.21967 0.95868 0.98791 0.89857 1.76996 0.88102 1.25219 1.22183 1.48754 1.06191 1.52704 1.05463 1.22511 0.82782 1.05429 0.94611 1.23840 0.98628 0.95929 0.85257 1.20260 0.94335 1.23318 0.93233 1.17789 0.83666 0.77483 0.84707 1.90683 1.24725 1.49733 1.82646 1.48011 1.17128 1.57773 1.09274 1.22171 0.82590 1.00423 1.01854 1.19031 0.94893 0.94721 0.78974 0.94772 1.22112 1.00532 0.98292 0.98894 1.21374 1.15128 0.93603 1.25462 0.92631 1.25579 0.98525 0.96080 0.96844 1.69982 1.36694 1.15287 1.35598 0.86166 0.80076 0.81195 0.77939 1.21364 1.20250 1.16755 0.94620 0.88003 0.91825 0.89939 0.92983 0.88590 0.85327 0.88287 0.75325 0.89578 0.90103 0.91486 0.93263 0.91443 0.93449 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -14.55 10.69 -148.98 -1.59 -16.14 16 3 C 0.15 5.22 5.90 71.23 0.42 5.64 16 4 C 0.10 3.62 6.89 43.51 0.30 3.92 16 5 N -0.30 -9.25 12.50 -46.67 -0.58 -9.83 16 6 N -0.35 -7.77 3.98 -367.79 -1.46 -9.24 16 7 C 0.08 0.78 11.44 127.77 1.46 2.24 16 8 C 0.12 2.73 9.13 84.28 0.77 3.50 16 9 C -0.30 -10.49 5.54 -20.15 -0.11 -10.60 16 10 C 0.57 25.14 7.46 86.66 0.65 25.79 16 11 O -0.60 -31.18 15.35 -4.05 -0.06 -31.24 16 12 N -0.59 -24.55 2.75 -830.67 -2.29 -26.84 16 13 C 0.07 2.11 8.10 127.77 1.04 3.15 16 14 C 0.23 10.90 2.19 44.24 0.10 11.00 16 15 H 0.03 1.86 4.49 -2.39 -0.01 1.84 16 16 C -0.14 -5.63 8.93 71.98 0.64 -4.99 16 17 C -0.52 -28.68 8.71 25.60 0.22 -28.46 16 18 H 0.06 3.27 6.87 -2.91 -0.02 3.25 16 19 C 0.03 1.68 5.47 84.66 0.46 2.15 16 20 N -0.94 -57.48 13.96 21.45 0.30 -57.18 16 21 Si 0.92 46.23 26.43 68.60 1.81 48.04 16 22 H -0.29 -15.02 7.11 99.48 0.71 -14.31 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.24 -11.47 6.06 99.48 0.60 -10.87 16 25 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.05 2.06 7.52 -2.39 -0.02 2.04 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.13 0.29 8.14 -2.39 -0.02 0.28 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.23 3.30 5.91 -2.91 -0.02 3.29 16 34 H 0.09 1.78 7.48 -2.38 -0.02 1.76 16 35 H 0.08 2.03 5.41 -2.39 -0.01 2.02 16 36 H 0.07 2.21 6.60 -2.38 -0.02 2.20 16 37 H 0.05 2.02 6.79 -2.39 -0.02 2.01 16 38 H 0.07 2.44 7.85 -2.39 -0.02 2.43 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -83.15 329.06 4.26 -78.88 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.94 Total: 8.16 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 7.20 Total: 15.37 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -4.03 Total: -103.08 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -1.65 Total: -47.38 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.81 Total: 48.04 kcal Total: -83.15 4.26 -78.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262822769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.601 kcal (2) G-P(sol) polarization free energy of solvation -83.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds