Wall clock time and date at job start Tue Mar 31 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42907 * 113.99617 * 2 1 4 4 C 1.50697 * 109.46812 * 179.97438 * 3 2 1 5 5 N 1.30442 * 125.99198 * 269.95662 * 4 3 2 6 6 N 1.39935 * 108.90182 * 180.02562 * 5 4 3 7 7 C 1.46500 * 125.75675 * 179.97438 * 6 5 4 8 8 C 1.34264 * 108.48699 * 359.74971 * 6 5 4 9 9 C 1.38032 * 107.41848 * 0.39777 * 8 6 5 10 10 C 1.47430 * 126.41747 * 179.87203 * 9 8 6 11 11 O 1.21611 * 120.00310 * 215.28461 * 10 9 8 12 12 N 1.34773 * 119.99917 * 35.27735 * 10 9 8 13 13 C 1.46505 * 119.99954 * 355.68681 * 12 10 9 14 14 C 1.46506 * 120.00144 * 175.68472 * 12 10 9 15 15 H 1.08997 * 109.47043 * 0.02562 * 14 12 10 16 16 C 1.53005 * 109.46712 * 120.00238 * 14 12 10 17 17 C 1.50696 * 109.46992 * 240.00149 * 14 12 10 18 18 H 1.07994 * 120.00557 * 0.02562 * 17 14 12 19 19 C 1.37876 * 119.99583 * 180.02562 * 17 14 12 20 20 N 1.31515 * 120.00535 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99975 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.47305 * 89.99826 * 21 19 17 23 23 H 1.48501 * 109.47325 * 209.99985 * 21 19 17 24 24 H 1.48494 * 109.47216 * 329.99818 * 21 19 17 25 25 H 1.08995 * 109.47037 * 60.00034 * 1 2 3 26 26 H 1.09000 * 109.46927 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47181 * 299.99772 * 1 2 3 28 28 H 1.08997 * 109.47177 * 60.00083 * 3 2 1 29 29 H 1.09004 * 109.47186 * 299.99827 * 3 2 1 30 30 H 1.08999 * 109.46966 * 89.97666 * 7 6 5 31 31 H 1.09005 * 109.46895 * 209.97458 * 7 6 5 32 32 H 1.08993 * 109.47234 * 329.97751 * 7 6 5 33 33 H 1.08004 * 126.28986 * 180.23815 * 8 6 5 34 34 H 1.08994 * 109.46988 * 275.41857 * 13 12 10 35 35 H 1.08997 * 109.47006 * 35.42106 * 13 12 10 36 36 H 1.09002 * 109.46940 * 155.41816 * 13 12 10 37 37 H 1.08999 * 109.46812 * 180.02562 * 16 14 12 38 38 H 1.08997 * 109.47061 * 60.00385 * 16 14 12 39 39 H 1.08997 * 109.47011 * 299.99980 * 16 14 12 40 40 H 0.96991 * 120.00793 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2763 1.1271 1.0564 6 7 5.6099 1.0217 0.6457 7 6 6.7736 0.9310 1.5310 8 6 5.6426 1.0126 -0.6965 9 6 4.3407 1.1206 -1.1423 10 6 3.8967 1.1542 -2.5478 11 8 2.9478 1.8434 -2.8694 12 7 4.5426 0.4213 -3.4762 13 6 5.7425 -0.3344 -3.1081 14 6 4.0449 0.3802 -4.8535 15 1 3.1514 0.9991 -4.9355 16 6 5.1220 0.9122 -5.8010 17 6 3.7077 -1.0412 -5.2235 18 1 3.8496 -1.8345 -4.5047 19 6 3.2182 -1.3287 -6.4800 20 7 3.0449 -0.3626 -7.3553 21 14 2.7995 -3.0905 -6.9386 22 1 1.3819 -3.3682 -6.5942 23 1 3.0016 -3.2838 -8.3970 24 1 3.6822 -4.0202 -6.1891 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8465 -0.8900 30 1 6.9813 -0.1159 1.7519 31 1 7.6387 1.3775 1.0406 32 1 6.5666 1.4641 2.4589 33 1 6.5255 0.9376 -1.3140 34 1 6.6134 0.3189 -3.1597 35 1 5.6343 -0.7162 -2.0929 36 1 5.8725 -1.1683 -3.7979 37 1 4.7515 0.8821 -6.8257 38 1 6.0157 0.2936 -5.7191 39 1 5.3658 1.9403 -5.5333 40 1 2.7002 -0.5648 -8.2390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262822770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:40 Heat of formation + Delta-G solvation = 9.571421 kcal Electronic energy + Delta-G solvation = -22768.191259 eV Core-core repulsion = 19392.824665 eV Total energy + Delta-G solvation = -3375.366594 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30868 -38.50984 -37.54635 -35.22829 -33.52945 -32.89077 -30.68246 -29.02616 -28.63270 -26.52464 -26.08981 -25.17837 -24.87393 -22.44299 -20.93689 -19.76084 -18.59679 -16.75045 -16.40079 -16.31644 -15.86834 -15.52029 -15.36844 -15.16816 -14.91109 -14.26230 -14.12263 -13.62258 -13.19029 -12.80418 -12.67731 -12.42079 -12.29358 -12.08193 -11.88367 -11.60100 -11.38655 -11.19623 -10.98774 -10.83377 -10.74091 -10.63423 -10.19125 -10.12272 -9.52033 -9.36406 -9.14054 -8.90568 -8.42837 -8.35473 -7.50313 -6.02395 -4.09724 1.73710 2.29005 2.40208 3.30849 3.37219 3.39257 3.76762 4.12906 4.18446 4.45194 4.50907 4.74841 4.94415 4.99334 5.19608 5.22568 5.28569 5.40172 5.51633 5.58130 5.69363 5.75564 5.81568 5.85050 5.97449 6.01564 6.39935 6.52233 6.80670 6.86155 6.90943 7.12316 7.30394 7.50490 7.59688 7.68753 7.77919 8.08567 8.25945 8.61736 8.90071 9.17389 9.56745 11.02922 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.005526 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.873284 B = 5065.475554 C = 5911.848566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.383 6.383 3 C 0.138 3.862 4 C 0.123 3.877 5 N -0.288 5.288 6 N -0.367 5.367 7 C 0.100 3.900 8 C 0.084 3.916 9 C -0.252 4.252 10 C 0.583 3.417 11 O -0.553 6.553 12 N -0.587 5.587 13 C 0.081 3.919 14 C 0.259 3.741 15 H 0.064 0.936 16 C -0.145 4.145 17 C -0.523 4.523 18 H 0.060 0.940 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.187 0.813 34 H 0.039 0.961 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.028 0.972 39 H 0.011 0.989 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.368 2.107 15.171 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.060 3.940 4 C -0.044 4.044 5 N -0.111 5.111 6 N -0.147 5.147 7 C -0.041 4.041 8 C -0.065 4.065 9 C -0.267 4.267 10 C 0.370 3.630 11 O -0.432 6.432 12 N -0.317 5.317 13 C -0.063 4.063 14 C 0.159 3.841 15 H 0.082 0.918 16 C -0.204 4.204 17 C -0.562 4.562 18 H 0.078 0.922 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.066 0.934 26 H 0.104 0.896 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.204 0.796 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.048 0.952 39 H 0.030 0.970 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.084 2.302 16.135 17.397 hybrid contribution -0.110 -0.897 -1.116 1.436 sum 5.973 1.405 15.019 16.224 Atomic orbital electron populations 1.22731 0.80588 1.02804 1.00067 1.87917 1.19888 1.26804 1.95498 1.20725 0.85159 0.85730 1.02361 1.21841 0.95444 0.97843 0.89293 1.77044 0.86519 1.24902 1.22654 1.48234 1.06042 1.55553 1.04884 1.21919 0.83985 1.03596 0.94573 1.23328 0.99366 0.99181 0.84646 1.20510 0.92151 1.18593 0.95474 1.17217 0.82728 0.79939 0.83146 1.90681 1.29115 1.42279 1.81141 1.48068 1.26741 1.45145 1.11734 1.21780 0.87063 0.96771 1.00728 1.18943 0.93942 0.97239 0.73952 0.91796 1.22082 0.98349 0.95849 1.04111 1.21338 1.43675 0.92789 0.98389 0.92227 1.24877 0.95273 0.97369 0.96216 1.69879 1.45276 1.31457 1.06064 0.86509 0.78902 0.84622 0.77431 1.20609 1.21195 1.19965 0.93406 0.89598 0.94317 0.92102 0.89046 0.90408 0.89228 0.89147 0.79615 0.94270 0.92655 0.89901 0.88861 0.95249 0.96997 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.38 -6.86 10.69 -35.23 -0.38 -7.24 16 3 C 0.14 2.36 6.30 36.00 0.23 2.59 16 4 C 0.12 2.23 6.89 -82.02 -0.56 1.66 16 5 N -0.29 -4.72 12.50 33.89 0.42 -4.30 16 6 N -0.37 -4.81 3.98 -67.60 -0.27 -5.08 16 7 C 0.10 0.73 11.44 59.85 0.68 1.41 16 8 C 0.08 1.18 9.19 -16.56 -0.15 1.03 16 9 C -0.25 -4.68 5.44 -105.07 -0.57 -5.25 16 10 C 0.58 13.06 7.49 -12.52 -0.09 12.96 16 11 O -0.55 -14.16 14.89 5.27 0.08 -14.08 16 12 N -0.59 -13.00 2.75 -176.52 -0.49 -13.49 16 13 C 0.08 1.39 7.93 59.85 0.47 1.86 16 14 C 0.26 6.73 2.63 -69.08 -0.18 6.55 16 15 H 0.06 1.92 6.91 -51.93 -0.36 1.56 16 16 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 17 C -0.52 -14.33 7.95 -34.44 -0.27 -14.60 16 18 H 0.06 1.62 7.43 -52.49 -0.39 1.24 16 19 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 20 N -0.89 -25.25 11.32 55.43 0.63 -24.62 16 21 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.68 6.66 -51.93 -0.35 1.33 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.19 2.00 6.09 -52.48 -0.32 1.68 16 34 H 0.04 0.55 7.29 -51.93 -0.38 0.17 16 35 H 0.05 0.85 5.83 -51.93 -0.30 0.55 16 36 H 0.08 1.51 7.11 -51.93 -0.37 1.14 16 37 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 38 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 332.03 15.07 5.00 5.00 Total: -1.00 -34.86 332.03 -4.81 -39.67 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.69 Total: -0.44 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 0.90 Total: 8.32 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.30 Total: -47.49 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.30 Total: -21.32 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.86 -4.81 -39.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262822770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.243 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds