Wall clock time and date at job start Tue Mar 31 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42907 * 113.99617 * 2 1 4 4 C 1.50697 * 109.46812 * 179.97438 * 3 2 1 5 5 N 1.30442 * 125.99198 * 269.95662 * 4 3 2 6 6 N 1.39935 * 108.90182 * 180.02562 * 5 4 3 7 7 C 1.46500 * 125.75675 * 179.97438 * 6 5 4 8 8 C 1.34264 * 108.48699 * 359.74971 * 6 5 4 9 9 C 1.38032 * 107.41848 * 0.39777 * 8 6 5 10 10 C 1.47430 * 126.41747 * 179.87203 * 9 8 6 11 11 O 1.21611 * 120.00310 * 215.28461 * 10 9 8 12 12 N 1.34773 * 119.99917 * 35.27735 * 10 9 8 13 13 C 1.46505 * 119.99954 * 355.68681 * 12 10 9 14 14 C 1.46506 * 120.00144 * 175.68472 * 12 10 9 15 15 H 1.08997 * 109.47043 * 0.02562 * 14 12 10 16 16 C 1.53005 * 109.46712 * 120.00238 * 14 12 10 17 17 C 1.50696 * 109.46992 * 240.00149 * 14 12 10 18 18 H 1.07994 * 120.00557 * 0.02562 * 17 14 12 19 19 C 1.37876 * 119.99583 * 180.02562 * 17 14 12 20 20 N 1.31515 * 120.00535 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99975 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.47305 * 89.99826 * 21 19 17 23 23 H 1.48501 * 109.47325 * 209.99985 * 21 19 17 24 24 H 1.48494 * 109.47216 * 329.99818 * 21 19 17 25 25 H 1.08995 * 109.47037 * 60.00034 * 1 2 3 26 26 H 1.09000 * 109.46927 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47181 * 299.99772 * 1 2 3 28 28 H 1.08997 * 109.47177 * 60.00083 * 3 2 1 29 29 H 1.09004 * 109.47186 * 299.99827 * 3 2 1 30 30 H 1.08999 * 109.46966 * 89.97666 * 7 6 5 31 31 H 1.09005 * 109.46895 * 209.97458 * 7 6 5 32 32 H 1.08993 * 109.47234 * 329.97751 * 7 6 5 33 33 H 1.08004 * 126.28986 * 180.23815 * 8 6 5 34 34 H 1.08994 * 109.46988 * 275.41857 * 13 12 10 35 35 H 1.08997 * 109.47006 * 35.42106 * 13 12 10 36 36 H 1.09002 * 109.46940 * 155.41816 * 13 12 10 37 37 H 1.08999 * 109.46812 * 180.02562 * 16 14 12 38 38 H 1.08997 * 109.47061 * 60.00385 * 16 14 12 39 39 H 1.08997 * 109.47011 * 299.99980 * 16 14 12 40 40 H 0.96991 * 120.00793 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2763 1.1271 1.0564 6 7 5.6099 1.0217 0.6457 7 6 6.7736 0.9310 1.5310 8 6 5.6426 1.0126 -0.6965 9 6 4.3407 1.1206 -1.1423 10 6 3.8967 1.1542 -2.5478 11 8 2.9478 1.8434 -2.8694 12 7 4.5426 0.4213 -3.4762 13 6 5.7425 -0.3344 -3.1081 14 6 4.0449 0.3802 -4.8535 15 1 3.1514 0.9991 -4.9355 16 6 5.1220 0.9122 -5.8010 17 6 3.7077 -1.0412 -5.2235 18 1 3.8496 -1.8345 -4.5047 19 6 3.2182 -1.3287 -6.4800 20 7 3.0449 -0.3626 -7.3553 21 14 2.7995 -3.0905 -6.9386 22 1 1.3819 -3.3682 -6.5942 23 1 3.0016 -3.2838 -8.3970 24 1 3.6822 -4.0202 -6.1891 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8465 -0.8900 30 1 6.9813 -0.1159 1.7519 31 1 7.6387 1.3775 1.0406 32 1 6.5666 1.4641 2.4589 33 1 6.5255 0.9376 -1.3140 34 1 6.6134 0.3189 -3.1597 35 1 5.6343 -0.7162 -2.0929 36 1 5.8725 -1.1683 -3.7979 37 1 4.7515 0.8821 -6.8257 38 1 6.0157 0.2936 -5.7191 39 1 5.3658 1.9403 -5.5333 40 1 2.7002 -0.5648 -8.2390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262822770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:39 Heat of formation + Delta-G solvation = -16.044057 kcal Electronic energy + Delta-G solvation = -22769.302030 eV Core-core repulsion = 19392.824665 eV Total energy + Delta-G solvation = -3376.477365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.52048 -40.18739 -38.81332 -37.05704 -34.83796 -34.57085 -32.27119 -30.48348 -29.87697 -27.81920 -27.34680 -27.25378 -26.09253 -23.92876 -22.35550 -21.17973 -20.10682 -18.47663 -17.99571 -17.59577 -17.42686 -16.91585 -16.72884 -16.46385 -16.16190 -15.87642 -15.72675 -14.86980 -14.73282 -14.18901 -13.79825 -13.74584 -13.49117 -13.44935 -13.21770 -13.19667 -12.97211 -12.79862 -12.73317 -12.56001 -12.35741 -12.16027 -12.07394 -11.93476 -11.16282 -10.87573 -10.60603 -10.48635 -10.43964 -9.68352 -9.24491 -8.11659 -6.27670 0.59714 0.94145 1.42211 1.42738 1.44439 1.53815 2.15288 2.43868 2.62514 2.95403 3.16122 3.42610 3.70555 3.99037 4.06478 4.21040 4.38093 4.46063 4.47027 4.48573 4.50773 4.55558 4.71574 4.74500 4.79001 4.80021 4.83659 4.95709 5.03956 5.12014 5.25054 5.52170 5.66696 5.71553 5.91227 6.09224 6.10325 6.20579 6.46581 6.79868 6.88968 7.35769 7.53868 8.92671 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.005526 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.873284 B = 5065.475554 C = 5911.848566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.139 3.861 4 C 0.103 3.897 5 N -0.300 5.300 6 N -0.352 5.352 7 C 0.085 3.915 8 C 0.115 3.885 9 C -0.295 4.295 10 C 0.576 3.424 11 O -0.603 6.603 12 N -0.594 5.594 13 C 0.077 3.923 14 C 0.263 3.737 15 H 0.008 0.992 16 C -0.129 4.129 17 C -0.536 4.536 18 H 0.057 0.943 19 C 0.017 3.983 20 N -0.916 5.916 21 Si 0.962 3.038 22 H -0.284 1.284 23 H -0.278 1.278 24 H -0.263 1.263 25 H 0.037 0.963 26 H 0.100 0.900 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.227 0.773 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.021 0.979 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.052 0.848 16.980 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C 0.061 3.939 4 C -0.063 4.063 5 N -0.124 5.124 6 N -0.131 5.131 7 C -0.053 4.053 8 C -0.036 4.036 9 C -0.310 4.310 10 C 0.365 3.635 11 O -0.487 6.487 12 N -0.323 5.323 13 C -0.065 4.065 14 C 0.162 3.838 15 H 0.026 0.974 16 C -0.188 4.188 17 C -0.575 4.575 18 H 0.075 0.925 19 C -0.183 4.183 20 N -0.555 5.555 21 Si 0.787 3.213 22 H -0.210 1.210 23 H -0.203 1.203 24 H -0.187 1.187 25 H 0.056 0.944 26 H 0.118 0.882 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.145 0.855 32 H 0.117 0.883 33 H 0.243 0.757 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.813 1.027 18.000 20.068 hybrid contribution -0.885 -0.478 -1.576 1.870 sum 7.927 0.549 16.424 18.246 Atomic orbital electron populations 1.22948 0.78771 1.04064 1.00983 1.87860 1.22071 1.27443 1.95652 1.20674 0.85531 0.85498 1.02165 1.21960 0.95915 0.98750 0.89721 1.76985 0.88070 1.25215 1.22162 1.48737 1.06200 1.52789 1.05366 1.22505 0.82750 1.05513 0.94515 1.23723 0.98678 0.95938 0.85280 1.20242 0.94525 1.23090 0.93178 1.17801 0.81944 0.79010 0.84722 1.90638 1.31392 1.44395 1.82244 1.48042 1.28251 1.45746 1.10306 1.22053 0.86250 0.96828 1.01414 1.18550 0.92816 0.95698 0.76785 0.97439 1.21850 0.98257 0.96729 1.01966 1.21553 1.44069 0.93294 0.98566 0.92473 1.25690 0.95031 1.01371 0.96161 1.70018 1.45711 1.33429 1.06368 0.85496 0.78336 0.79912 0.77508 1.21022 1.20329 1.18673 0.94392 0.88198 0.91474 0.89686 0.91699 0.88475 0.85506 0.88252 0.75663 0.90141 0.90655 0.90995 0.91453 0.93145 0.96018 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.41 -15.13 10.69 -148.98 -1.59 -16.72 16 3 C 0.14 4.93 6.30 71.23 0.45 5.37 16 4 C 0.10 3.71 6.89 43.52 0.30 4.01 16 5 N -0.30 -9.31 12.50 -46.68 -0.58 -9.89 16 6 N -0.35 -7.94 3.98 -367.79 -1.46 -9.40 16 7 C 0.09 0.82 11.44 127.77 1.46 2.28 16 8 C 0.12 2.86 9.19 84.27 0.77 3.63 16 9 C -0.30 -10.77 5.44 -20.15 -0.11 -10.88 16 10 C 0.58 26.53 7.49 86.67 0.65 27.18 16 11 O -0.60 -33.06 14.89 -4.07 -0.06 -33.12 16 12 N -0.59 -26.46 2.75 -830.66 -2.29 -28.74 16 13 C 0.08 2.44 7.93 127.77 1.01 3.46 16 14 C 0.26 14.12 2.63 44.24 0.12 14.23 16 15 H 0.01 0.49 6.91 -2.39 -0.02 0.47 16 16 C -0.13 -6.27 8.97 71.98 0.65 -5.63 16 17 C -0.54 -29.89 7.95 25.60 0.20 -29.69 16 18 H 0.06 3.14 7.43 -2.91 -0.02 3.12 16 19 C 0.02 0.95 5.30 84.65 0.45 1.40 16 20 N -0.92 -53.40 11.32 21.45 0.24 -53.16 16 21 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.06 2.59 6.66 -2.38 -0.02 2.58 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.13 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.23 3.58 6.09 -2.91 -0.02 3.56 16 34 H 0.08 1.89 7.29 -2.39 -0.02 1.88 16 35 H 0.08 2.09 5.83 -2.39 -0.01 2.07 16 36 H 0.07 2.47 7.11 -2.39 -0.02 2.45 16 37 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 38 H 0.05 2.17 7.67 -2.39 -0.02 2.15 16 39 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -81.12 332.03 4.53 -76.59 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 1.04 Total: 11.24 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 7.20 Total: 17.38 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -4.09 Total: -101.20 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -1.65 Total: -49.84 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -81.12 4.53 -76.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262822770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.549 kcal (2) G-P(sol) polarization free energy of solvation -81.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds