Wall clock time and date at job start Tue Mar 31 2020 05:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.47284 * 2 1 4 4 C 1.34721 * 117.00481 * 179.97438 * 3 2 1 5 5 O 1.21494 * 119.99998 * 0.02562 * 4 3 2 6 6 C 1.47585 * 120.00402 * 180.02562 * 4 3 2 7 7 C 1.41542 * 126.52519 * 179.97438 * 6 4 3 8 8 C 1.35348 * 105.50252 * 180.02562 * 7 6 4 9 9 C 1.50699 * 126.38006 * 180.02562 * 8 7 6 10 10 N 1.46894 * 109.47510 * 94.99303 * 9 8 7 11 11 C 1.46896 * 111.00457 * 174.82694 * 10 9 8 12 12 H 1.09009 * 109.47079 * 325.90972 * 11 10 9 13 13 C 1.50696 * 109.47599 * 205.90650 * 11 10 9 14 14 H 1.07995 * 119.99913 * 359.97438 * 13 11 10 15 15 C 1.37885 * 120.00299 * 180.02562 * 13 11 10 16 16 N 1.31508 * 120.00034 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 119.99713 * 359.97438 * 15 13 11 18 18 H 1.48504 * 109.46884 * 89.99946 * 17 15 13 19 19 H 1.48497 * 109.47353 * 209.99836 * 17 15 13 20 20 H 1.48495 * 109.47504 * 330.00178 * 17 15 13 21 21 C 1.52996 * 109.47220 * 85.90260 * 11 10 9 22 22 C 1.53005 * 109.47195 * 65.18165 * 21 11 10 23 23 N 1.35049 * 107.24059 * 0.02562 * 8 7 6 24 24 H 0.97000 * 124.87667 * 179.97438 * 23 8 7 25 25 N 1.28462 * 110.23890 * 359.97438 * 23 8 7 26 26 H 1.09007 * 109.46868 * 59.99886 * 1 2 3 27 27 H 1.09001 * 109.46705 * 179.97438 * 1 2 3 28 28 H 1.08989 * 109.46862 * 299.99818 * 1 2 3 29 29 H 1.09002 * 109.47189 * 240.00385 * 2 1 3 30 30 H 1.08994 * 109.47125 * 120.00004 * 2 1 3 31 31 H 1.08009 * 127.25023 * 0.26319 * 7 6 4 32 32 H 1.08998 * 109.47398 * 214.99841 * 9 8 7 33 33 H 1.09004 * 109.46933 * 334.99299 * 9 8 7 34 34 H 1.00896 * 111.00304 * 298.78520 * 10 9 8 35 35 H 0.96999 * 119.99911 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.47967 * 185.18388 * 21 11 10 37 37 H 1.09000 * 109.47489 * 305.18460 * 21 11 10 38 38 H 1.09005 * 109.46857 * 54.85351 * 22 21 11 39 39 H 1.08990 * 109.47316 * 174.85614 * 22 21 11 40 40 H 1.09003 * 109.47056 * 294.85677 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3497 1.5455 0.0005 5 8 4.0898 0.5821 0.0005 6 6 3.9138 2.9093 0.0011 7 6 5.2868 3.2530 0.0023 8 6 5.3211 4.6061 0.0030 9 6 6.5566 5.4689 0.0038 10 7 6.8894 5.8490 -1.3756 11 6 8.0164 6.7907 -1.4049 12 1 7.9710 7.4390 -0.5298 13 6 7.9387 7.6284 -2.6552 14 1 7.1330 7.4761 -3.3580 15 6 8.8969 8.5885 -2.9025 16 7 8.8288 9.3198 -3.9933 17 14 10.2910 8.8513 -1.6872 18 1 11.4336 7.9737 -2.0473 19 1 10.7245 10.2710 -1.7306 20 1 9.8234 8.5182 -0.3178 21 6 9.3328 6.0111 -1.3943 22 6 9.4552 5.1992 -2.6853 23 7 4.0418 5.0388 0.0030 24 1 3.7714 5.9704 0.0038 25 7 3.2346 4.0395 0.0017 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 6.1298 2.5778 -0.0011 32 1 6.3723 6.3668 0.5937 33 1 7.3876 4.9131 0.4381 34 1 7.0841 5.0344 -1.9381 35 1 9.5032 9.9950 -4.1674 36 1 10.1676 6.7084 -1.3232 37 1 9.3489 5.3367 -0.5381 38 1 9.3475 5.8627 -3.5434 39 1 10.4316 4.7163 -2.7197 40 1 8.6733 4.4401 -2.7127 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326302272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:28 Heat of formation + Delta-G solvation = -11.489366 kcal Electronic energy + Delta-G solvation = -21537.141606 eV Core-core repulsion = 18160.861748 eV Total energy + Delta-G solvation = -3376.279858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.70926 -40.21508 -37.07797 -36.66814 -33.36923 -32.31056 -31.73295 -31.55785 -29.98721 -27.07827 -25.28608 -24.56923 -23.27460 -22.87605 -21.18642 -20.49378 -19.67715 -17.93993 -17.43385 -16.75428 -16.44797 -16.25924 -15.64426 -15.14113 -14.81486 -14.16170 -13.83689 -13.73248 -13.64673 -13.40836 -13.19539 -12.98625 -12.68422 -12.43666 -12.16348 -11.90654 -11.82300 -11.15297 -11.00209 -10.83634 -10.79269 -10.70906 -10.63017 -10.52681 -9.97207 -9.53086 -9.47016 -9.25282 -9.01273 -8.61105 -7.64040 -6.11442 -4.08453 1.29162 2.05260 2.35975 3.02371 3.12680 3.20791 3.28343 3.33082 4.33707 4.33785 4.64348 4.69151 4.73402 4.95556 5.02080 5.07668 5.18761 5.35086 5.48827 5.52322 5.55763 5.72508 5.74629 5.83004 5.90906 5.96426 6.10522 6.21898 6.30913 6.47078 6.66638 6.72992 6.87903 6.94414 7.22693 7.57204 7.59711 7.74475 7.91011 8.11909 8.59337 8.99586 9.50414 11.01754 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037311 B = 0.003088 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.261748 B = 9063.833458 C = 9254.953298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.344 6.344 4 C 0.561 3.439 5 O -0.503 6.503 6 C -0.011 4.011 7 C -0.176 4.176 8 C 0.045 3.955 9 C 0.116 3.884 10 N -0.670 5.670 11 C 0.187 3.813 12 H 0.035 0.965 13 C -0.494 4.494 14 H 0.082 0.918 15 C 0.070 3.930 16 N -0.898 5.898 17 Si 0.881 3.119 18 H -0.279 1.279 19 H -0.297 1.297 20 H -0.270 1.270 21 C -0.160 4.160 22 C -0.139 4.139 23 N -0.359 5.359 24 H 0.451 0.549 25 N -0.233 5.233 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.163 0.837 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.339 0.661 35 H 0.264 0.736 36 H 0.050 0.950 37 H 0.034 0.966 38 H 0.081 0.919 39 H 0.031 0.969 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.649 -13.916 10.060 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.260 6.260 4 C 0.403 3.597 5 O -0.389 6.389 6 C -0.169 4.169 7 C -0.204 4.204 8 C -0.081 4.081 9 C -0.015 4.015 10 N -0.302 5.302 11 C 0.078 3.922 12 H 0.053 0.947 13 C -0.532 4.532 14 H 0.100 0.900 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.712 3.288 18 H -0.206 1.206 19 H -0.224 1.224 20 H -0.195 1.195 21 C -0.199 4.199 22 C -0.196 4.196 23 N -0.075 5.075 24 H 0.297 0.703 25 N -0.072 5.072 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.181 0.819 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.158 0.842 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.050 0.950 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.931 -13.247 9.919 20.401 hybrid contribution 2.364 -0.334 0.774 2.510 sum -9.566 -13.581 10.694 19.756 Atomic orbital electron populations 1.21802 0.92523 1.02866 1.03730 1.23069 0.95460 0.80033 1.02702 1.86644 1.23352 1.32138 1.83887 1.19563 0.80513 0.87282 0.72318 1.90853 1.60649 1.41065 1.46317 1.20585 0.92086 0.90017 1.14164 1.21443 0.95724 0.93854 1.09422 1.21586 0.87745 0.94156 1.04621 1.20519 0.90131 0.96714 0.94161 1.60702 1.43970 1.18747 1.06763 1.19737 0.83547 0.90064 0.98853 0.94718 1.20845 1.11396 1.16201 1.04758 0.90015 1.24894 0.97574 0.95681 0.94985 1.69872 1.35497 1.22888 1.25438 0.86967 0.83277 0.76277 0.82309 1.20561 1.22433 1.19528 1.22512 1.01638 0.98982 0.96772 1.21660 0.98599 0.99487 0.99901 1.43414 1.03694 1.09184 1.51176 0.70294 1.73662 1.21742 0.94481 1.17271 0.91332 0.90229 0.91421 0.91046 0.91133 0.81948 0.89802 0.92874 0.84158 0.92613 0.93159 0.94694 0.90000 0.94956 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.29 37.16 0.38 -0.64 16 2 C 0.06 0.58 6.20 37.16 0.23 0.81 16 3 O -0.34 -4.47 10.23 -40.55 -0.41 -4.88 16 4 C 0.56 8.20 7.97 34.54 0.28 8.48 16 5 O -0.50 -8.04 16.72 -19.26 -0.32 -8.36 16 6 C -0.01 -0.16 7.17 -82.79 -0.59 -0.76 16 7 C -0.18 -2.47 10.73 -39.35 -0.42 -2.89 16 8 C 0.05 0.61 6.78 -82.21 -0.56 0.05 16 9 C 0.12 1.64 6.06 -4.98 -0.03 1.61 16 10 N -0.67 -12.04 6.19 -109.23 -0.68 -12.72 16 11 C 0.19 3.96 1.93 -68.87 -0.13 3.83 16 12 H 0.04 0.76 6.76 -51.92 -0.35 0.41 16 13 C -0.49 -12.87 7.83 -34.44 -0.27 -13.14 16 14 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 15 C 0.07 1.92 5.42 -17.82 -0.10 1.82 16 16 N -0.90 -26.42 13.96 55.43 0.77 -25.65 16 17 Si 0.88 20.83 24.32 -169.99 -4.13 16.70 16 18 H -0.28 -6.48 6.92 56.52 0.39 -6.09 16 19 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.27 -6.04 6.53 56.52 0.37 -5.67 16 21 C -0.16 -3.16 5.22 -26.73 -0.14 -3.30 16 22 C -0.14 -2.64 9.40 37.16 0.35 -2.29 16 23 N -0.36 -4.58 6.83 33.50 0.23 -4.35 16 24 H 0.45 4.59 8.96 -190.44 -1.71 2.89 16 25 N -0.23 -3.35 12.24 33.41 0.41 -2.94 16 26 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.16 2.08 8.06 -52.48 -0.42 1.65 16 32 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 33 H 0.05 0.70 7.54 -51.93 -0.39 0.31 16 34 H 0.34 6.00 6.69 -39.29 -0.26 5.74 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.05 1.07 3.42 -51.93 -0.18 0.89 16 37 H 0.03 0.60 7.50 -51.93 -0.39 0.21 16 38 H 0.08 1.80 6.85 -51.93 -0.36 1.44 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.04 0.71 6.63 -51.93 -0.34 0.37 16 LS Contribution 331.59 15.07 5.00 5.00 Total: -1.00 -30.87 331.59 -7.10 -37.96 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.95 Total: 5.64 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.00 Total: -6.41 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.73 Total: -45.65 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.74 Total: -13.25 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.13 Total: 16.70 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.87 -7.10 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326302272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.473 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds