Wall clock time and date at job start Tue Mar 31 2020 05:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.47284 * 2 1 4 4 C 1.34721 * 117.00481 * 179.97438 * 3 2 1 5 5 O 1.21494 * 119.99998 * 0.02562 * 4 3 2 6 6 C 1.47585 * 120.00402 * 180.02562 * 4 3 2 7 7 C 1.41542 * 126.52519 * 179.97438 * 6 4 3 8 8 C 1.35348 * 105.50252 * 180.02562 * 7 6 4 9 9 C 1.50699 * 126.38006 * 180.02562 * 8 7 6 10 10 N 1.46894 * 109.47510 * 94.99303 * 9 8 7 11 11 C 1.46896 * 111.00457 * 174.82694 * 10 9 8 12 12 H 1.09009 * 109.47079 * 325.90972 * 11 10 9 13 13 C 1.50696 * 109.47599 * 205.90650 * 11 10 9 14 14 H 1.07995 * 119.99913 * 359.97438 * 13 11 10 15 15 C 1.37885 * 120.00299 * 180.02562 * 13 11 10 16 16 N 1.31508 * 120.00034 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 119.99713 * 359.97438 * 15 13 11 18 18 H 1.48504 * 109.46884 * 89.99946 * 17 15 13 19 19 H 1.48497 * 109.47353 * 209.99836 * 17 15 13 20 20 H 1.48495 * 109.47504 * 330.00178 * 17 15 13 21 21 C 1.52996 * 109.47220 * 85.90260 * 11 10 9 22 22 C 1.53005 * 109.47195 * 65.18165 * 21 11 10 23 23 N 1.35049 * 107.24059 * 0.02562 * 8 7 6 24 24 H 0.97000 * 124.87667 * 179.97438 * 23 8 7 25 25 N 1.28462 * 110.23890 * 359.97438 * 23 8 7 26 26 H 1.09007 * 109.46868 * 59.99886 * 1 2 3 27 27 H 1.09001 * 109.46705 * 179.97438 * 1 2 3 28 28 H 1.08989 * 109.46862 * 299.99818 * 1 2 3 29 29 H 1.09002 * 109.47189 * 240.00385 * 2 1 3 30 30 H 1.08994 * 109.47125 * 120.00004 * 2 1 3 31 31 H 1.08009 * 127.25023 * 0.26319 * 7 6 4 32 32 H 1.08998 * 109.47398 * 214.99841 * 9 8 7 33 33 H 1.09004 * 109.46933 * 334.99299 * 9 8 7 34 34 H 1.00896 * 111.00304 * 298.78520 * 10 9 8 35 35 H 0.96999 * 119.99911 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.47967 * 185.18388 * 21 11 10 37 37 H 1.09000 * 109.47489 * 305.18460 * 21 11 10 38 38 H 1.09005 * 109.46857 * 54.85351 * 22 21 11 39 39 H 1.08990 * 109.47316 * 174.85614 * 22 21 11 40 40 H 1.09003 * 109.47056 * 294.85677 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3497 1.5455 0.0005 5 8 4.0898 0.5821 0.0005 6 6 3.9138 2.9093 0.0011 7 6 5.2868 3.2530 0.0023 8 6 5.3211 4.6061 0.0030 9 6 6.5566 5.4689 0.0038 10 7 6.8894 5.8490 -1.3756 11 6 8.0164 6.7907 -1.4049 12 1 7.9710 7.4390 -0.5298 13 6 7.9387 7.6284 -2.6552 14 1 7.1330 7.4761 -3.3580 15 6 8.8969 8.5885 -2.9025 16 7 8.8288 9.3198 -3.9933 17 14 10.2910 8.8513 -1.6872 18 1 11.4336 7.9737 -2.0473 19 1 10.7245 10.2710 -1.7306 20 1 9.8234 8.5182 -0.3178 21 6 9.3328 6.0111 -1.3943 22 6 9.4552 5.1992 -2.6853 23 7 4.0418 5.0388 0.0030 24 1 3.7714 5.9704 0.0038 25 7 3.2346 4.0395 0.0017 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 6.1298 2.5778 -0.0011 32 1 6.3723 6.3668 0.5937 33 1 7.3876 4.9131 0.4381 34 1 7.0841 5.0344 -1.9381 35 1 9.5032 9.9950 -4.1674 36 1 10.1676 6.7084 -1.3232 37 1 9.3489 5.3367 -0.5381 38 1 9.3475 5.8627 -3.5434 39 1 10.4316 4.7163 -2.7197 40 1 8.6733 4.4401 -2.7127 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326302272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:27 Heat of formation + Delta-G solvation = -33.771613 kcal Electronic energy + Delta-G solvation = -21538.107837 eV Core-core repulsion = 18160.861748 eV Total energy + Delta-G solvation = -3377.246089 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.78391 -41.25901 -38.61203 -37.70072 -34.91095 -33.58802 -33.20698 -32.37850 -31.27542 -28.79459 -26.29156 -25.93274 -24.95860 -23.64028 -22.28237 -21.53648 -21.34322 -19.11346 -18.68364 -18.01263 -17.73191 -17.43235 -17.03880 -16.57305 -16.19546 -15.38063 -15.06616 -14.95340 -14.81397 -14.64534 -14.48478 -14.39067 -14.04870 -13.61341 -13.20939 -12.95508 -12.81729 -12.54451 -12.52067 -12.38516 -12.21836 -12.02030 -11.88739 -11.64036 -11.54231 -11.23517 -11.10044 -10.66068 -10.57408 -10.13358 -9.06630 -8.20761 -6.20767 0.18945 0.96915 1.35050 1.38446 1.40320 1.47989 2.01740 2.05425 2.37034 3.14867 3.30947 3.46665 3.81722 3.96541 4.02520 4.08271 4.26769 4.34196 4.35725 4.41028 4.42458 4.52632 4.67422 4.82864 4.85553 4.93534 4.96217 5.09485 5.10662 5.20264 5.22554 5.32420 5.36728 5.61906 5.75872 5.94958 6.03292 6.53308 6.68283 6.69348 6.84420 6.85994 7.42570 8.96616 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037311 B = 0.003088 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.261748 B = 9063.833458 C = 9254.953298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.352 6.352 4 C 0.561 3.439 5 O -0.523 6.523 6 C -0.030 4.030 7 C -0.177 4.177 8 C 0.046 3.954 9 C 0.121 3.879 10 N -0.682 5.682 11 C 0.192 3.808 12 H 0.038 0.962 13 C -0.485 4.485 14 H 0.034 0.966 15 C 0.012 3.988 16 N -0.954 5.954 17 Si 0.942 3.058 18 H -0.271 1.271 19 H -0.307 1.307 20 H -0.242 1.242 21 C -0.159 4.159 22 C -0.136 4.136 23 N -0.350 5.350 24 H 0.461 0.539 25 N -0.241 5.241 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.174 0.826 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.340 0.660 35 H 0.262 0.738 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.052 0.948 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.415 -15.390 12.342 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.268 6.268 4 C 0.405 3.595 5 O -0.411 6.411 6 C -0.186 4.186 7 C -0.206 4.206 8 C -0.080 4.080 9 C -0.010 4.010 10 N -0.314 5.314 11 C 0.083 3.917 12 H 0.056 0.944 13 C -0.523 4.523 14 H 0.053 0.947 15 C -0.184 4.184 16 N -0.595 5.595 17 Si 0.770 3.230 18 H -0.197 1.197 19 H -0.235 1.235 20 H -0.166 1.166 21 C -0.198 4.198 22 C -0.193 4.193 23 N -0.067 5.067 24 H 0.309 0.691 25 N -0.080 5.080 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.192 0.808 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.160 0.840 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.734 -14.743 12.229 22.463 hybrid contribution 2.130 0.052 0.018 2.131 sum -9.604 -14.691 12.246 21.402 Atomic orbital electron populations 1.21833 0.90345 1.04528 1.03606 1.23426 0.97161 0.78496 1.03106 1.86642 1.22427 1.34310 1.83385 1.19606 0.80961 0.87089 0.71881 1.90831 1.61160 1.41585 1.47490 1.20778 0.92675 0.90269 1.14916 1.21656 0.95803 0.94234 1.08863 1.21479 0.87736 0.93937 1.04877 1.20549 0.90843 0.97645 0.91921 1.60485 1.42715 1.18743 1.09455 1.19489 0.85736 0.90508 0.95980 0.94377 1.21099 1.09270 1.16406 1.05575 0.94745 1.25689 1.00440 0.95649 0.96661 1.70043 1.36980 1.24390 1.28110 0.85970 0.80209 0.75565 0.81288 1.19737 1.23494 1.16571 1.22457 0.99644 0.99234 0.98470 1.21592 1.00560 0.99180 0.98011 1.43493 1.03483 1.09539 1.50223 0.69092 1.73638 1.22137 0.94756 1.17479 0.91606 0.87643 0.91350 0.90876 0.90558 0.80832 0.88668 0.90747 0.84016 0.92897 0.94418 0.90907 0.94034 0.92866 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.29 71.98 0.74 -0.97 16 2 C 0.05 0.91 6.20 71.98 0.45 1.35 16 3 O -0.35 -8.87 10.23 -56.31 -0.58 -9.45 16 4 C 0.56 16.02 7.97 70.29 0.56 16.58 16 5 O -0.52 -16.35 16.72 19.85 0.33 -16.01 16 6 C -0.03 -0.85 7.17 42.42 0.30 -0.54 16 7 C -0.18 -4.60 10.73 22.42 0.24 -4.36 16 8 C 0.05 1.14 6.78 41.40 0.28 1.42 16 9 C 0.12 3.02 6.06 85.56 0.52 3.54 16 10 N -0.68 -23.08 6.19 -499.49 -3.09 -26.17 16 11 C 0.19 7.76 1.93 44.17 0.09 7.85 16 12 H 0.04 1.54 6.76 -2.38 -0.02 1.53 16 13 C -0.48 -25.59 7.83 25.60 0.20 -25.39 16 14 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 15 C 0.01 0.66 5.42 84.66 0.46 1.12 16 16 N -0.95 -58.11 13.96 21.45 0.30 -57.81 16 17 Si 0.94 42.45 24.32 68.60 1.67 44.12 16 18 H -0.27 -11.79 6.92 99.48 0.69 -11.10 16 19 H -0.31 -14.20 7.11 99.48 0.71 -13.50 16 20 H -0.24 -9.72 6.53 99.48 0.65 -9.07 16 21 C -0.16 -5.75 5.22 30.59 0.16 -5.59 16 22 C -0.14 -4.87 9.40 71.98 0.68 -4.19 16 23 N -0.35 -8.31 6.83 -47.93 -0.33 -8.64 16 24 H 0.46 8.62 8.96 -219.99 -1.97 6.65 16 25 N -0.24 -6.61 12.24 -48.22 -0.59 -7.20 16 26 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.17 4.01 8.06 -2.91 -0.02 3.99 16 32 H 0.10 2.20 7.93 -2.39 -0.02 2.18 16 33 H 0.07 1.61 7.54 -2.38 -0.02 1.59 16 34 H 0.34 11.34 6.69 -89.70 -0.60 10.74 16 35 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.04 1.47 3.42 -2.39 -0.01 1.46 16 37 H 0.07 2.12 7.50 -2.39 -0.02 2.10 16 38 H 0.04 1.81 6.85 -2.38 -0.02 1.79 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.90 6.63 -2.39 -0.02 1.88 16 Total: -1.00 -68.13 331.59 0.81 -67.32 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -1.57 Total: 23.04 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 4.67 Total: -9.19 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -3.71 Total: -99.83 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.24 Total: -25.46 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.67 Total: 44.12 kcal Total: -68.13 0.81 -67.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326302272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.552 kcal (2) G-P(sol) polarization free energy of solvation -68.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds