Wall clock time and date at job start Tue Mar 31 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47487 * 2 1 4 4 C 1.35997 * 117.00365 * 179.97438 * 3 2 1 5 5 C 1.39688 * 125.67201 * 180.02562 * 4 3 2 6 6 C 1.37986 * 107.63475 * 180.02562 * 5 4 3 7 7 C 1.47176 * 126.43150 * 180.02562 * 6 5 4 8 8 O 1.21628 * 119.99826 * 359.72701 * 7 6 5 9 9 N 1.34777 * 119.99843 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99875 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47037 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47415 * 300.00318 * 11 10 9 13 13 C 1.53002 * 109.47128 * 60.00324 * 11 10 9 14 14 C 1.50696 * 109.47306 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99818 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00342 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99769 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00300 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47086 * 59.99960 * 18 16 14 20 20 H 1.48503 * 109.47155 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46879 * 299.99904 * 18 16 14 22 22 N 1.36666 * 107.13080 * 0.26158 * 6 5 4 23 23 H 0.96999 * 126.09390 * 179.69926 * 22 6 5 24 24 N 1.31223 * 125.67098 * 0.04525 * 4 3 2 25 25 H 1.09001 * 109.47478 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47114 * 299.99853 * 1 2 3 27 27 H 1.09002 * 109.47351 * 59.99472 * 1 2 3 28 28 H 1.09004 * 109.46962 * 240.00421 * 2 1 3 29 29 H 1.09003 * 109.46925 * 120.00851 * 2 1 3 30 30 H 1.08000 * 126.18188 * 0.06226 * 5 4 3 31 31 H 0.96999 * 120.00043 * 0.02562 * 9 7 6 32 32 H 1.08992 * 109.47647 * 300.00149 * 10 9 7 33 33 H 1.08996 * 109.46956 * 60.00915 * 10 9 7 34 34 H 1.09002 * 109.47045 * 59.99931 * 12 11 10 35 35 H 1.08998 * 109.47171 * 179.97438 * 12 11 10 36 36 H 1.09000 * 109.47140 * 300.00024 * 12 11 10 37 37 H 1.09004 * 109.47006 * 59.99907 * 13 11 10 38 38 H 1.09001 * 109.47600 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47097 * 299.99925 * 13 11 10 40 40 H 0.97005 * 120.00032 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.0135 2.7571 0.0011 6 6 5.3702 2.5055 0.0010 7 6 6.4456 3.5104 0.0020 8 8 6.1707 4.6952 -0.0019 9 7 7.7348 3.1176 0.0022 10 6 8.8052 4.1178 0.0026 11 6 10.1627 3.4121 0.0022 12 6 10.2827 2.5362 1.2508 13 6 10.2825 2.5376 -1.2476 14 6 11.2638 4.4409 0.0020 15 1 11.0198 5.4930 0.0026 16 6 12.5828 4.0392 0.0010 17 7 12.8799 2.7581 -0.0003 18 14 13.9476 5.3145 0.0015 19 1 13.8319 6.1629 1.2148 20 1 15.2652 4.6295 0.0009 21 1 13.8308 6.1650 -1.2102 22 7 5.5279 1.1480 -0.0057 23 1 6.3723 0.6708 -0.0115 24 7 4.2529 0.5688 0.0002 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5140 0.8899 30 1 3.5456 3.7305 0.0022 31 1 7.9540 2.1727 0.0013 32 1 8.7201 4.7415 -0.8871 33 1 8.7197 4.7410 0.8928 34 1 9.4862 1.7919 1.2505 35 1 11.2496 2.0330 1.2502 36 1 10.1974 3.1591 2.1412 37 1 10.1970 3.1616 -2.1373 38 1 11.2497 2.0351 -1.2483 39 1 9.4860 1.7934 -1.2480 40 1 13.8078 2.4754 -0.0013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331202520.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:20 Heat of formation + Delta-G solvation = -7.715296 kcal Electronic energy + Delta-G solvation = -21698.884166 eV Core-core repulsion = 18322.767963 eV Total energy + Delta-G solvation = -3376.116202 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.46221 -39.31815 -38.28441 -36.50099 -33.58614 -32.27460 -31.22245 -30.30408 -30.16862 -26.01119 -25.84348 -25.24869 -24.03926 -22.57058 -21.32645 -20.19784 -19.13941 -18.64140 -17.14772 -16.53354 -16.07065 -15.64221 -15.35570 -15.25681 -14.72216 -14.27824 -14.25165 -13.62097 -13.48904 -13.04827 -13.00301 -12.86162 -12.68239 -12.32086 -11.94533 -11.51014 -11.29649 -11.11499 -10.98664 -10.92565 -10.79104 -10.49859 -10.29198 -9.97085 -9.75566 -9.43666 -9.25595 -8.90649 -8.80608 -8.63779 -8.43459 -6.09583 -4.20049 1.06419 2.28096 2.46631 2.91259 3.26159 3.30798 3.33772 3.34708 3.49712 4.34226 4.52846 4.69966 4.74159 4.80583 5.04500 5.17554 5.24710 5.33499 5.52041 5.61458 5.72109 6.00519 6.06482 6.18531 6.36119 6.56799 6.68065 6.71637 6.79929 6.84347 6.89939 7.13595 7.23243 7.38156 7.44437 7.60694 7.75055 7.90525 8.03079 8.25152 8.34649 8.80116 9.46335 10.91944 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.050062 B = 0.002987 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.170653 B = 9371.343156 C = 9728.849792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.289 6.289 4 C 0.260 3.740 5 C -0.200 4.200 6 C 0.071 3.929 7 C 0.572 3.428 8 O -0.522 6.522 9 N -0.707 5.707 10 C 0.130 3.870 11 C 0.056 3.944 12 C -0.132 4.132 13 C -0.132 4.132 14 C -0.508 4.508 15 H 0.059 0.941 16 C 0.067 3.933 17 N -0.886 5.886 18 Si 0.895 3.105 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 N -0.447 5.447 23 H 0.446 0.554 24 N -0.322 5.322 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.166 0.834 31 H 0.395 0.605 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.003 0.997 35 H 0.087 0.913 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.087 0.913 39 H 0.003 0.997 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.790 -7.121 -0.005 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.193 6.193 4 C 0.057 3.943 5 C -0.231 4.231 6 C -0.060 4.060 7 C 0.355 3.645 8 O -0.397 6.397 9 N -0.357 5.357 10 C 0.008 3.992 11 C 0.055 3.945 12 C -0.190 4.190 13 C -0.190 4.190 14 C -0.546 4.546 15 H 0.077 0.923 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 N -0.165 5.165 23 H 0.292 0.708 24 N -0.164 5.164 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.184 0.816 31 H 0.230 0.770 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.022 0.978 35 H 0.106 0.894 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.106 0.894 39 H 0.022 0.978 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.920 -7.365 -0.007 18.453 hybrid contribution 1.246 0.463 0.002 1.329 sum -15.674 -6.902 -0.004 17.126 Atomic orbital electron populations 1.21794 0.92688 1.02908 1.03531 1.22724 0.95427 0.81268 1.02279 1.86310 1.13849 1.29627 1.89541 1.20217 0.84319 0.92017 0.97768 1.21044 0.89753 0.98158 1.14182 1.21539 0.95662 0.84418 1.04368 1.17094 0.81909 0.87113 0.78396 1.90841 1.82913 1.16016 1.49914 1.46269 1.05377 1.11537 1.72550 1.21884 0.86087 0.90010 1.01200 1.18374 0.89265 0.93961 0.92871 1.21857 1.01440 0.98014 0.97689 1.21861 1.01447 0.98017 0.97684 1.20911 0.90082 0.92377 1.51267 0.92326 1.24879 0.98610 0.95336 0.94647 1.69781 1.18514 1.13847 1.50296 0.86604 0.80889 0.81471 0.78742 1.20227 1.21316 1.20222 1.46111 1.06890 1.03662 1.59867 0.70771 1.77283 0.88178 1.20289 1.30678 0.90271 0.91478 0.91482 0.91747 0.91746 0.81636 0.77032 0.91986 0.91989 0.97760 0.89409 0.95196 0.95202 0.89390 0.97766 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.54 6.33 37.16 0.24 0.77 16 3 O -0.29 -3.55 10.22 -19.73 -0.20 -3.76 16 4 C 0.26 3.57 7.85 -17.27 -0.14 3.43 16 5 C -0.20 -2.85 10.63 -39.13 -0.42 -3.27 16 6 C 0.07 1.03 7.12 -82.18 -0.59 0.44 16 7 C 0.57 9.58 7.80 -12.63 -0.10 9.48 16 8 O -0.52 -10.41 16.90 5.25 0.09 -10.32 16 9 N -0.71 -11.62 4.95 -61.47 -0.30 -11.93 16 10 C 0.13 2.57 4.50 -4.04 -0.02 2.55 16 11 C 0.06 1.23 0.50 -155.66 -0.08 1.15 16 12 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 13 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 14 C -0.51 -12.76 8.01 -34.44 -0.28 -13.03 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 17 N -0.89 -22.85 9.35 55.43 0.52 -22.34 16 18 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 N -0.45 -5.59 7.33 33.41 0.24 -5.34 16 23 H 0.45 4.38 8.23 -182.65 -1.50 2.88 16 24 N -0.32 -4.33 12.05 30.46 0.37 -3.97 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.39 5.66 5.34 -40.82 -0.22 5.44 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.00 0.06 6.86 -51.93 -0.36 -0.29 16 35 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 2.09 6.07 -51.93 -0.31 1.78 16 39 H 0.00 0.06 6.86 -51.93 -0.36 -0.29 16 40 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -28.36 332.82 -6.61 -34.97 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.83 Total: 5.00 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.48 Total: -2.50 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.83 Total: -43.57 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.11 Total: -14.08 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.36 -6.61 -34.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331202520.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.251 kcal (2) G-P(sol) polarization free energy of solvation -28.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds