Wall clock time and date at job start Tue Mar 31 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47487 * 2 1 4 4 C 1.35997 * 117.00365 * 179.97438 * 3 2 1 5 5 C 1.39688 * 125.67201 * 180.02562 * 4 3 2 6 6 C 1.37986 * 107.63475 * 180.02562 * 5 4 3 7 7 C 1.47176 * 126.43150 * 180.02562 * 6 5 4 8 8 O 1.21628 * 119.99826 * 359.72701 * 7 6 5 9 9 N 1.34777 * 119.99843 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99875 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47037 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47415 * 300.00318 * 11 10 9 13 13 C 1.53002 * 109.47128 * 60.00324 * 11 10 9 14 14 C 1.50696 * 109.47306 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99818 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00342 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99769 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00300 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47086 * 59.99960 * 18 16 14 20 20 H 1.48503 * 109.47155 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46879 * 299.99904 * 18 16 14 22 22 N 1.36666 * 107.13080 * 0.26158 * 6 5 4 23 23 H 0.96999 * 126.09390 * 179.69926 * 22 6 5 24 24 N 1.31223 * 125.67098 * 0.04525 * 4 3 2 25 25 H 1.09001 * 109.47478 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47114 * 299.99853 * 1 2 3 27 27 H 1.09002 * 109.47351 * 59.99472 * 1 2 3 28 28 H 1.09004 * 109.46962 * 240.00421 * 2 1 3 29 29 H 1.09003 * 109.46925 * 120.00851 * 2 1 3 30 30 H 1.08000 * 126.18188 * 0.06226 * 5 4 3 31 31 H 0.96999 * 120.00043 * 0.02562 * 9 7 6 32 32 H 1.08992 * 109.47647 * 300.00149 * 10 9 7 33 33 H 1.08996 * 109.46956 * 60.00915 * 10 9 7 34 34 H 1.09002 * 109.47045 * 59.99931 * 12 11 10 35 35 H 1.08998 * 109.47171 * 179.97438 * 12 11 10 36 36 H 1.09000 * 109.47140 * 300.00024 * 12 11 10 37 37 H 1.09004 * 109.47006 * 59.99907 * 13 11 10 38 38 H 1.09001 * 109.47600 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47097 * 299.99925 * 13 11 10 40 40 H 0.97005 * 120.00032 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.0135 2.7571 0.0011 6 6 5.3702 2.5055 0.0010 7 6 6.4456 3.5104 0.0020 8 8 6.1707 4.6952 -0.0019 9 7 7.7348 3.1176 0.0022 10 6 8.8052 4.1178 0.0026 11 6 10.1627 3.4121 0.0022 12 6 10.2827 2.5362 1.2508 13 6 10.2825 2.5376 -1.2476 14 6 11.2638 4.4409 0.0020 15 1 11.0198 5.4930 0.0026 16 6 12.5828 4.0392 0.0010 17 7 12.8799 2.7581 -0.0003 18 14 13.9476 5.3145 0.0015 19 1 13.8319 6.1629 1.2148 20 1 15.2652 4.6295 0.0009 21 1 13.8308 6.1650 -1.2102 22 7 5.5279 1.1480 -0.0057 23 1 6.3723 0.6708 -0.0115 24 7 4.2529 0.5688 0.0002 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5140 0.8899 30 1 3.5456 3.7305 0.0022 31 1 7.9540 2.1727 0.0013 32 1 8.7201 4.7415 -0.8871 33 1 8.7197 4.7410 0.8928 34 1 9.4862 1.7919 1.2505 35 1 11.2496 2.0330 1.2502 36 1 10.1974 3.1591 2.1412 37 1 10.1970 3.1616 -2.1373 38 1 11.2497 2.0351 -1.2483 39 1 9.4860 1.7934 -1.2480 40 1 13.8078 2.4754 -0.0013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331202520.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:20 Heat of formation + Delta-G solvation = -27.806158 kcal Electronic energy + Delta-G solvation = -21699.755371 eV Core-core repulsion = 18322.767963 eV Total energy + Delta-G solvation = -3376.987408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.55450 -40.65231 -39.27110 -38.15886 -35.19461 -33.23445 -32.71069 -31.53125 -31.14289 -27.61059 -27.56910 -27.04138 -25.01420 -23.66944 -22.30200 -21.41287 -20.69691 -20.07798 -18.10379 -17.83527 -17.42534 -17.00662 -16.85800 -16.53141 -16.37749 -15.38404 -15.32319 -14.86810 -14.79174 -14.62058 -14.49908 -14.03107 -13.56273 -13.41292 -13.20604 -13.10370 -12.68553 -12.66270 -12.61939 -12.26152 -12.15282 -12.00956 -11.83279 -11.49711 -11.43003 -11.14656 -10.71880 -10.43510 -10.35769 -10.05297 -9.80089 -8.02210 -6.17418 -0.10130 1.31131 1.37227 1.45304 1.47169 1.52737 1.77001 2.06806 2.34150 2.48861 3.22219 3.49289 3.58881 4.07186 4.13544 4.19481 4.37486 4.41999 4.44175 4.50225 4.69638 4.81349 4.96249 4.96390 5.02395 5.03398 5.06854 5.18858 5.21710 5.25088 5.50360 5.66822 5.68413 5.77338 6.15469 6.19117 6.20323 6.33848 6.42770 6.46771 6.85816 6.97505 7.50468 8.96441 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.050062 B = 0.002987 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.170653 B = 9371.343156 C = 9728.849792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.298 6.298 4 C 0.255 3.745 5 C -0.206 4.206 6 C 0.067 3.933 7 C 0.581 3.419 8 O -0.556 6.556 9 N -0.697 5.697 10 C 0.145 3.855 11 C 0.051 3.949 12 C -0.124 4.124 13 C -0.125 4.125 14 C -0.527 4.527 15 H 0.048 0.952 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.943 3.057 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.277 1.277 22 N -0.433 5.433 23 H 0.458 0.542 24 N -0.320 5.320 25 H 0.102 0.898 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.169 0.831 31 H 0.407 0.593 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.038 0.962 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.994 -8.279 -0.005 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 O -0.202 6.202 4 C 0.053 3.947 5 C -0.237 4.237 6 C -0.065 4.065 7 C 0.365 3.635 8 O -0.433 6.433 9 N -0.348 5.348 10 C 0.022 3.978 11 C 0.051 3.949 12 C -0.182 4.182 13 C -0.182 4.182 14 C -0.566 4.566 15 H 0.066 0.934 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.770 3.230 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.203 1.203 22 N -0.153 5.153 23 H 0.307 0.693 24 N -0.163 5.163 25 H 0.120 0.880 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.187 0.813 31 H 0.244 0.756 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.124 -8.565 -0.007 20.046 hybrid contribution 1.549 0.779 0.002 1.734 sum -16.576 -7.786 -0.005 18.313 Atomic orbital electron populations 1.21822 0.90626 1.04414 1.03538 1.23005 0.97055 0.79881 1.02436 1.86321 1.13005 1.31592 1.89320 1.20283 0.85019 0.91731 0.97715 1.21203 0.89901 0.98780 1.13813 1.21054 0.94879 0.84709 1.05827 1.17225 0.82056 0.87000 0.77226 1.90828 1.83404 1.17690 1.51393 1.46003 1.04759 1.11564 1.72511 1.21467 0.86040 0.90169 1.00144 1.18367 0.89398 0.93661 0.93507 1.21714 1.01324 0.98288 0.96902 1.21718 1.01332 0.98293 0.96895 1.21235 0.91419 0.92736 1.51214 0.93394 1.25428 1.00224 0.96710 0.94762 1.69890 1.18564 1.14650 1.50645 0.85847 0.78954 0.79733 0.78443 1.20276 1.21092 1.20267 1.46113 1.07309 1.02903 1.58974 0.69325 1.77280 0.88373 1.20238 1.30423 0.87989 0.91465 0.91469 0.91568 0.91568 0.81320 0.75565 0.93143 0.93136 0.94361 0.91853 0.96030 0.96043 0.91834 0.94361 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 71.98 0.74 -0.86 16 2 C 0.05 0.84 6.33 71.98 0.46 1.30 16 3 O -0.30 -6.88 10.22 -93.52 -0.96 -7.84 16 4 C 0.26 6.59 7.85 85.13 0.67 7.26 16 5 C -0.21 -5.58 10.63 22.56 0.24 -5.34 16 6 C 0.07 1.81 7.12 40.68 0.29 2.10 16 7 C 0.58 18.70 7.80 86.59 0.68 19.38 16 8 O -0.56 -21.92 16.90 -4.12 -0.07 -21.99 16 9 N -0.70 -21.75 4.95 -466.64 -2.31 -24.06 16 10 C 0.14 5.64 4.50 86.38 0.39 6.03 16 11 C 0.05 2.21 0.50 -52.93 -0.03 2.19 16 12 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 13 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 14 C -0.53 -26.60 8.01 25.60 0.21 -26.40 16 15 H 0.05 2.46 7.74 -2.91 -0.02 2.43 16 16 C 0.03 1.46 5.15 84.65 0.44 1.89 16 17 N -0.90 -46.39 9.35 21.45 0.20 -46.19 16 18 Si 0.94 41.45 29.54 68.60 2.03 43.48 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 N -0.43 -9.79 7.33 -48.20 -0.35 -10.15 16 23 H 0.46 7.66 8.23 -213.37 -1.76 5.91 16 24 N -0.32 -7.92 12.05 -170.76 -2.06 -9.98 16 25 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.17 4.37 8.06 -2.91 -0.02 4.35 16 31 H 0.41 10.57 5.34 -92.71 -0.49 10.07 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.04 1.28 6.86 -2.39 -0.02 1.26 16 35 H 0.06 2.97 6.07 -2.39 -0.01 2.96 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 37 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 39 H 0.04 1.28 6.86 -2.39 -0.02 1.26 16 40 H 0.26 13.04 8.31 -92.70 -0.77 12.26 16 Total: -1.00 -59.85 332.82 0.53 -59.32 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -1.18 Total: 19.01 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 5.24 Total: -1.60 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -4.52 Total: -90.38 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -1.03 Total: -29.83 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -59.85 0.53 -59.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331202520.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.509 kcal (2) G-P(sol) polarization free energy of solvation -59.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds