Wall clock time and date at job start Tue Mar 31 2020 05:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47520 * 2 1 4 4 N 1.46906 * 109.46991 * 119.99876 * 2 1 3 5 5 C 1.46902 * 110.99856 * 169.86954 * 4 2 1 6 6 C 1.50693 * 109.47526 * 293.95554 * 5 4 2 7 7 H 1.08003 * 119.99824 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99949 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99752 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00094 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47003 * 90.00597 * 10 8 6 12 12 H 1.48506 * 109.47242 * 209.99974 * 10 8 6 13 13 H 1.48493 * 109.47257 * 330.00224 * 10 8 6 14 14 C 1.46893 * 110.99906 * 293.82848 * 4 2 1 15 15 C 1.50706 * 109.47270 * 163.86218 * 14 4 2 16 16 C 1.35343 * 126.38062 * 95.43980 * 15 14 4 17 17 C 1.41542 * 105.50491 * 179.90326 * 16 15 14 18 18 C 1.47583 * 126.52751 * 180.10313 * 17 16 15 19 19 O 1.21484 * 120.00025 * 0.29100 * 18 17 16 20 20 O 1.34729 * 119.99901 * 180.28972 * 18 17 16 21 21 N 1.31862 * 106.94707 * 0.36619 * 17 16 15 22 22 N 1.28469 * 110.06402 * 359.77514 * 21 17 16 23 23 C 1.46497 * 124.87906 * 180.02562 * 22 21 17 24 24 H 1.09003 * 109.47369 * 306.59410 * 1 2 3 25 25 H 1.09007 * 109.47259 * 66.58804 * 1 2 3 26 26 H 1.08992 * 109.47520 * 186.58998 * 1 2 3 27 27 H 1.08996 * 109.47170 * 239.99658 * 2 1 3 28 28 H 1.09002 * 109.47710 * 174.43135 * 3 2 1 29 29 H 1.09008 * 109.46991 * 294.42563 * 3 2 1 30 30 H 1.08998 * 109.47559 * 54.42950 * 3 2 1 31 31 H 1.09003 * 109.47155 * 53.95783 * 5 4 2 32 32 H 1.08997 * 109.46994 * 173.95312 * 5 4 2 33 33 H 0.97001 * 119.99983 * 179.97438 * 9 8 6 34 34 H 1.09008 * 109.47303 * 283.85792 * 14 4 2 35 35 H 1.08999 * 109.47431 * 43.86032 * 14 4 2 36 36 H 1.08007 * 127.24784 * 359.97438 * 16 15 14 37 37 H 0.96698 * 116.99848 * 180.02562 * 20 18 17 38 38 H 1.09003 * 109.47136 * 274.28185 * 23 22 21 39 39 H 1.09000 * 109.47323 * 34.27446 * 23 22 21 40 40 H 1.08997 * 109.47408 * 154.27621 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4679 -0.9246 1.1190 6 6 3.7603 -1.8926 0.0017 7 1 2.9511 -2.2955 -0.5892 8 6 5.0608 -2.2647 -0.2654 9 7 5.3159 -3.1099 -1.2402 10 14 6.4603 -1.5683 0.7572 11 1 6.7091 -2.4533 1.9235 12 1 7.6883 -1.4878 -0.0740 13 1 6.0961 -0.2103 1.2350 14 6 1.6727 0.0535 2.4165 15 6 1.8245 -0.8450 3.6169 16 6 2.9094 -0.9338 4.4211 17 6 2.5769 -1.9010 5.3996 18 6 3.4336 -2.3556 6.5120 19 8 4.5441 -1.8843 6.6552 20 8 2.9842 -3.2934 7.3686 21 7 1.3582 -2.3227 5.1246 22 7 0.9055 -1.7158 4.0867 23 6 -0.4178 -1.9362 3.4981 24 1 -0.3634 0.6126 0.8251 25 1 -0.3634 0.4084 -0.9431 26 1 -0.3634 -1.0208 0.1179 27 1 1.8933 -0.5139 -0.8899 28 1 3.1255 1.4441 0.0997 29 1 1.7605 1.9266 -0.9358 30 1 1.5976 1.9843 0.8359 31 1 3.9769 0.0195 0.9243 32 1 3.8222 -1.3405 2.0622 33 1 6.2308 -3.3714 -1.4284 34 1 2.3372 0.9115 2.5186 35 1 0.6411 0.3989 2.3493 36 1 3.8338 -0.3818 4.3352 37 1 3.5810 -3.5589 8.0815 38 1 -0.3724 -2.7779 2.8069 39 1 -1.1356 -2.1541 4.2889 40 1 -0.7301 -1.0410 2.9605 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332337861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:32 Heat of formation + Delta-G solvation = -2.574989 kcal Electronic energy + Delta-G solvation = -22855.066710 eV Core-core repulsion = 19479.173408 eV Total energy + Delta-G solvation = -3375.893302 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.56092 -39.73197 -38.02562 -35.97557 -33.41228 -32.74207 -32.36092 -30.31307 -27.83193 -27.68346 -26.78645 -24.81307 -23.87915 -21.88317 -20.98080 -20.18805 -18.95220 -17.66357 -16.95872 -16.74745 -16.24280 -16.03901 -15.28654 -15.04549 -14.69471 -14.30398 -13.96944 -13.45416 -13.30768 -13.22744 -12.85569 -12.70059 -12.50730 -12.40655 -12.06985 -11.79530 -11.57058 -11.48895 -11.09803 -10.90964 -10.74870 -10.67346 -10.58695 -10.41820 -10.15661 -9.89257 -9.28478 -9.00880 -8.74869 -8.55772 -7.52224 -6.06287 -4.03502 1.48065 2.22669 2.52338 3.19677 3.31573 3.35255 3.38110 3.41529 4.42723 4.49134 4.60406 4.88067 5.08505 5.15846 5.22524 5.27769 5.37966 5.46257 5.56243 5.66417 5.74074 5.78064 5.82541 5.87026 6.05514 6.07861 6.13158 6.34968 6.48259 6.51280 6.52209 6.68254 6.86896 6.93665 6.99851 7.56357 7.78797 7.87687 7.94626 8.16435 8.60936 9.00488 9.55842 11.06556 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.007197 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.486710 B = 3889.719934 C = 5423.970021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.080 3.920 3 C -0.183 4.183 4 N -0.517 5.517 5 C 0.156 3.844 6 C -0.508 4.508 7 H 0.080 0.920 8 C 0.071 3.929 9 N -0.900 5.900 10 Si 0.869 3.131 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.112 3.888 15 C 0.045 3.955 16 C -0.169 4.169 17 C -0.016 4.016 18 C 0.578 3.422 19 O -0.510 6.510 20 O -0.504 6.504 21 N -0.238 5.238 22 N -0.261 5.261 23 C 0.090 3.910 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.045 0.955 31 H -0.005 1.005 32 H 0.029 0.971 33 H 0.263 0.737 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.160 0.840 37 H 0.411 0.589 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.438 6.308 10.265 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 C -0.242 4.242 4 N -0.241 5.241 5 C 0.030 3.970 6 C -0.546 4.546 7 H 0.098 0.902 8 C -0.131 4.131 9 N -0.539 5.539 10 Si 0.696 3.304 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.191 1.191 14 C -0.018 4.018 15 C -0.079 4.079 16 C -0.198 4.198 17 C -0.172 4.172 18 C 0.420 3.580 19 O -0.396 6.396 20 O -0.314 6.314 21 N -0.077 5.077 22 N -0.051 5.051 23 C -0.050 4.050 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.013 0.987 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.178 0.822 37 H 0.269 0.731 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.410 5.242 10.232 16.917 hybrid contribution 2.360 1.291 0.592 2.754 sum -10.050 6.533 10.824 16.150 Atomic orbital electron populations 1.21901 0.95884 1.01699 1.00533 1.21663 0.93835 0.92099 0.95251 1.22464 1.02370 0.98335 1.01017 1.62223 1.18287 1.44517 0.99045 1.20293 0.82479 0.95913 0.98302 1.20952 0.93700 1.25143 1.14791 0.90233 1.24858 0.98519 0.94742 0.94967 1.69887 1.20153 1.33543 1.30301 0.86953 0.82331 0.80344 0.80767 1.19958 1.21239 1.19116 1.20609 1.01459 0.92469 0.87262 1.21351 0.90219 0.97447 0.98917 1.21428 0.99967 1.02510 0.95856 1.20432 0.93528 1.03718 0.99501 1.19291 0.83543 0.75666 0.79502 1.90908 1.20238 1.55933 1.72545 1.84654 1.50728 1.54854 1.41199 1.73593 1.11961 1.18256 1.03871 1.45297 1.14236 1.26618 1.18922 1.22166 0.78812 1.04727 0.99295 0.93773 0.92763 0.92027 0.87925 0.91924 0.92748 0.93557 0.98729 0.95261 0.92678 0.92450 0.90093 0.82224 0.73137 0.88937 0.89119 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.00 37.15 0.33 -1.45 16 2 C 0.08 1.31 2.78 -67.72 -0.19 1.12 16 3 C -0.18 -2.70 8.41 37.15 0.31 -2.39 16 4 N -0.52 -9.51 4.39 -229.53 -1.01 -10.52 16 5 C 0.16 3.59 3.52 -4.98 -0.02 3.57 16 6 C -0.51 -13.94 8.92 -34.44 -0.31 -14.25 16 7 H 0.08 2.37 7.43 -52.48 -0.39 1.98 16 8 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 9 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 10 Si 0.87 21.80 27.47 -169.99 -4.67 17.14 16 11 H -0.27 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 14 C 0.11 1.68 3.84 -4.98 -0.02 1.66 16 15 C 0.04 0.73 5.86 -82.21 -0.48 0.25 16 16 C -0.17 -3.01 9.64 -39.36 -0.38 -3.39 16 17 C -0.02 -0.28 7.17 -82.78 -0.59 -0.87 16 18 C 0.58 9.54 8.34 34.54 0.29 9.83 16 19 O -0.51 -9.45 17.71 -19.25 -0.34 -9.79 16 20 O -0.50 -6.49 13.44 -40.57 -0.55 -7.04 16 21 N -0.24 -4.03 11.99 33.41 0.40 -3.63 16 22 N -0.26 -3.96 3.70 -63.86 -0.24 -4.20 16 23 C 0.09 0.93 11.16 59.85 0.67 1.60 16 24 H 0.04 0.47 6.57 -51.93 -0.34 0.13 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.10 2.03 6.64 -51.93 -0.35 1.68 16 28 H 0.06 1.06 6.39 -51.93 -0.33 0.73 16 29 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.05 0.59 7.02 -51.93 -0.36 0.22 16 31 H 0.00 -0.11 5.38 -51.93 -0.28 -0.39 16 32 H 0.03 0.71 5.85 -51.93 -0.30 0.41 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.06 0.86 7.27 -51.92 -0.38 0.48 16 35 H 0.08 0.98 5.05 -51.93 -0.26 0.71 16 36 H 0.16 2.78 8.06 -52.48 -0.42 2.36 16 37 H 0.41 3.00 9.11 45.56 0.42 3.42 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.79 6.93 -51.93 -0.36 0.43 16 LS Contribution 328.23 15.07 4.95 4.95 Total: -1.00 -34.47 328.23 -5.80 -40.27 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -4.64 Total: 1.82 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -0.48 Total: -2.37 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.07 Total: -44.98 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.89 Total: -16.83 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.47 -5.80 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332337861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.697 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds