Wall clock time and date at job start Tue Mar 31 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47520 * 2 1 4 4 N 1.46906 * 109.46991 * 119.99876 * 2 1 3 5 5 C 1.46902 * 110.99856 * 169.86954 * 4 2 1 6 6 C 1.50693 * 109.47526 * 293.95554 * 5 4 2 7 7 H 1.08003 * 119.99824 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99949 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99752 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00094 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47003 * 90.00597 * 10 8 6 12 12 H 1.48506 * 109.47242 * 209.99974 * 10 8 6 13 13 H 1.48493 * 109.47257 * 330.00224 * 10 8 6 14 14 C 1.46893 * 110.99906 * 293.82848 * 4 2 1 15 15 C 1.50706 * 109.47270 * 163.86218 * 14 4 2 16 16 C 1.35343 * 126.38062 * 95.43980 * 15 14 4 17 17 C 1.41542 * 105.50491 * 179.90326 * 16 15 14 18 18 C 1.47583 * 126.52751 * 180.10313 * 17 16 15 19 19 O 1.21484 * 120.00025 * 0.29100 * 18 17 16 20 20 O 1.34729 * 119.99901 * 180.28972 * 18 17 16 21 21 N 1.31862 * 106.94707 * 0.36619 * 17 16 15 22 22 N 1.28469 * 110.06402 * 359.77514 * 21 17 16 23 23 C 1.46497 * 124.87906 * 180.02562 * 22 21 17 24 24 H 1.09003 * 109.47369 * 306.59410 * 1 2 3 25 25 H 1.09007 * 109.47259 * 66.58804 * 1 2 3 26 26 H 1.08992 * 109.47520 * 186.58998 * 1 2 3 27 27 H 1.08996 * 109.47170 * 239.99658 * 2 1 3 28 28 H 1.09002 * 109.47710 * 174.43135 * 3 2 1 29 29 H 1.09008 * 109.46991 * 294.42563 * 3 2 1 30 30 H 1.08998 * 109.47559 * 54.42950 * 3 2 1 31 31 H 1.09003 * 109.47155 * 53.95783 * 5 4 2 32 32 H 1.08997 * 109.46994 * 173.95312 * 5 4 2 33 33 H 0.97001 * 119.99983 * 179.97438 * 9 8 6 34 34 H 1.09008 * 109.47303 * 283.85792 * 14 4 2 35 35 H 1.08999 * 109.47431 * 43.86032 * 14 4 2 36 36 H 1.08007 * 127.24784 * 359.97438 * 16 15 14 37 37 H 0.96698 * 116.99848 * 180.02562 * 20 18 17 38 38 H 1.09003 * 109.47136 * 274.28185 * 23 22 21 39 39 H 1.09000 * 109.47323 * 34.27446 * 23 22 21 40 40 H 1.08997 * 109.47408 * 154.27621 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4679 -0.9246 1.1190 6 6 3.7603 -1.8926 0.0017 7 1 2.9511 -2.2955 -0.5892 8 6 5.0608 -2.2647 -0.2654 9 7 5.3159 -3.1099 -1.2402 10 14 6.4603 -1.5683 0.7572 11 1 6.7091 -2.4533 1.9235 12 1 7.6883 -1.4878 -0.0740 13 1 6.0961 -0.2103 1.2350 14 6 1.6727 0.0535 2.4165 15 6 1.8245 -0.8450 3.6169 16 6 2.9094 -0.9338 4.4211 17 6 2.5769 -1.9010 5.3996 18 6 3.4336 -2.3556 6.5120 19 8 4.5441 -1.8843 6.6552 20 8 2.9842 -3.2934 7.3686 21 7 1.3582 -2.3227 5.1246 22 7 0.9055 -1.7158 4.0867 23 6 -0.4178 -1.9362 3.4981 24 1 -0.3634 0.6126 0.8251 25 1 -0.3634 0.4084 -0.9431 26 1 -0.3634 -1.0208 0.1179 27 1 1.8933 -0.5139 -0.8899 28 1 3.1255 1.4441 0.0997 29 1 1.7605 1.9266 -0.9358 30 1 1.5976 1.9843 0.8359 31 1 3.9769 0.0195 0.9243 32 1 3.8222 -1.3405 2.0622 33 1 6.2308 -3.3714 -1.4284 34 1 2.3372 0.9115 2.5186 35 1 0.6411 0.3989 2.3493 36 1 3.8338 -0.3818 4.3352 37 1 3.5810 -3.5589 8.0815 38 1 -0.3724 -2.7779 2.8069 39 1 -1.1356 -2.1541 4.2889 40 1 -0.7301 -1.0410 2.9605 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332337861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:31 Heat of formation + Delta-G solvation = -29.037084 kcal Electronic energy + Delta-G solvation = -22856.214193 eV Core-core repulsion = 19479.173408 eV Total energy + Delta-G solvation = -3377.040785 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.77864 -40.95029 -39.42171 -37.14984 -34.86299 -34.48208 -33.63016 -31.88492 -29.42744 -28.76204 -27.91226 -26.30352 -25.03313 -23.65480 -22.24093 -21.39390 -20.31485 -18.87426 -18.80147 -18.23642 -17.47064 -17.18010 -16.59853 -16.49433 -16.12721 -15.91116 -15.29214 -14.85432 -14.70169 -14.46428 -14.38951 -14.04097 -13.64241 -13.38548 -13.32744 -13.20994 -12.86825 -12.71131 -12.65939 -12.46015 -12.13208 -12.05459 -11.98058 -11.90414 -11.80441 -11.49958 -11.29092 -10.77330 -10.21060 -10.03205 -8.99062 -8.29042 -6.28888 0.21794 0.96569 1.29955 1.33972 1.40295 1.45470 2.02477 2.14918 2.31434 3.06050 3.25967 3.38834 3.64523 4.04341 4.20014 4.25682 4.34903 4.42300 4.44257 4.55908 4.58837 4.64868 4.72438 4.77385 4.84008 4.88545 4.98821 5.09169 5.10872 5.23497 5.31160 5.42129 5.44702 5.56150 5.62737 5.77169 6.00264 6.42987 6.63147 6.74064 6.77610 6.99926 7.33983 8.87299 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.007197 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.486710 B = 3889.719934 C = 5423.970021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.076 3.924 3 C -0.177 4.177 4 N -0.526 5.526 5 C 0.169 3.831 6 C -0.502 4.502 7 H 0.043 0.957 8 C 0.013 3.987 9 N -0.947 5.947 10 Si 0.928 3.072 11 H -0.279 1.279 12 H -0.281 1.281 13 H -0.246 1.246 14 C 0.116 3.884 15 C 0.041 3.959 16 C -0.193 4.193 17 C -0.040 4.040 18 C 0.582 3.418 19 O -0.539 6.539 20 O -0.495 6.495 21 N -0.244 5.244 22 N -0.255 5.255 23 C 0.077 3.923 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.075 0.925 31 H -0.004 1.004 32 H 0.019 0.981 33 H 0.264 0.736 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.154 0.846 37 H 0.434 0.566 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.366 8.004 11.534 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.032 4.032 3 C -0.236 4.236 4 N -0.250 5.250 5 C 0.042 3.958 6 C -0.540 4.540 7 H 0.062 0.938 8 C -0.184 4.184 9 N -0.588 5.588 10 Si 0.753 3.247 11 H -0.205 1.205 12 H -0.207 1.207 13 H -0.170 1.170 14 C -0.013 4.013 15 C -0.084 4.084 16 C -0.222 4.222 17 C -0.195 4.195 18 C 0.425 3.575 19 O -0.428 6.428 20 O -0.308 6.308 21 N -0.084 5.084 22 N -0.045 5.045 23 C -0.061 4.061 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.013 0.987 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.140 0.860 36 H 0.172 0.828 37 H 0.297 0.703 38 H 0.107 0.893 39 H 0.134 0.866 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.375 6.936 11.526 19.688 hybrid contribution 2.808 0.694 0.171 2.897 sum -11.567 7.629 11.697 18.133 Atomic orbital electron populations 1.21823 0.92214 1.02325 1.02683 1.21675 0.96657 0.92318 0.92565 1.22397 1.00585 0.97481 1.03121 1.62056 1.15025 1.46660 1.01258 1.19948 0.85903 0.94410 0.95563 1.21239 0.92593 1.25038 1.15147 0.93837 1.25662 1.01285 0.95327 0.96148 1.70026 1.20727 1.35641 1.32433 0.85997 0.79356 0.80472 0.78901 1.20480 1.20701 1.16991 1.20728 1.03896 0.91803 0.84875 1.21509 0.90163 0.97751 0.98950 1.21587 1.00532 1.03193 0.96853 1.20691 0.94184 1.04363 1.00311 1.19217 0.82935 0.75744 0.79594 1.90887 1.21320 1.57159 1.73402 1.84598 1.51245 1.53492 1.41487 1.73560 1.11716 1.18436 1.04653 1.45752 1.15252 1.25398 1.18074 1.22616 0.77148 1.06050 1.00283 0.90664 0.91324 0.92431 0.92523 0.94736 0.91249 0.90644 0.98666 0.96329 0.92679 0.91785 0.86034 0.82837 0.70346 0.89294 0.86602 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.00 71.98 0.65 -2.20 16 2 C 0.08 2.38 2.78 44.91 0.12 2.50 16 3 C -0.18 -4.79 8.41 71.98 0.61 -4.18 16 4 N -0.53 -18.63 4.39 -880.08 -3.86 -22.49 16 5 C 0.17 7.75 3.52 85.55 0.30 8.05 16 6 C -0.50 -28.35 8.92 25.60 0.23 -28.12 16 7 H 0.04 2.71 7.43 -2.91 -0.02 2.69 16 8 C 0.01 0.76 5.47 84.65 0.46 1.23 16 9 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 10 Si 0.93 45.65 27.47 68.60 1.88 47.54 16 11 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 13 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 14 C 0.12 3.12 3.84 85.56 0.33 3.45 16 15 C 0.04 1.27 5.86 41.40 0.24 1.51 16 16 C -0.19 -6.74 9.64 22.42 0.22 -6.53 16 17 C -0.04 -1.41 7.17 42.42 0.30 -1.10 16 18 C 0.58 18.94 8.34 70.29 0.59 19.52 16 19 O -0.54 -19.94 17.71 19.89 0.35 -19.59 16 20 O -0.50 -12.09 13.44 -56.39 -0.76 -12.85 16 21 N -0.24 -7.90 11.99 -48.22 -0.58 -8.48 16 22 N -0.25 -7.14 3.70 -355.94 -1.32 -8.46 16 23 C 0.08 1.34 11.16 127.77 1.43 2.76 16 24 H 0.07 1.15 6.57 -2.39 -0.02 1.14 16 25 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 2.29 6.64 -2.39 -0.02 2.27 16 28 H 0.03 1.12 6.39 -2.39 -0.02 1.10 16 29 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.07 1.59 7.02 -2.39 -0.02 1.58 16 31 H 0.00 -0.19 5.38 -2.39 -0.01 -0.21 16 32 H 0.02 0.90 5.85 -2.39 -0.01 0.89 16 33 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 34 H 0.06 1.70 7.27 -2.38 -0.02 1.68 16 35 H 0.12 2.28 5.05 -2.39 -0.01 2.27 16 36 H 0.15 5.38 8.06 -2.91 -0.02 5.36 16 37 H 0.43 5.60 9.11 -74.06 -0.67 4.93 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.12 1.43 6.93 -2.39 -0.02 1.42 16 Total: -1.00 -77.82 328.23 1.84 -75.98 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.34 Total: 10.74 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 5.47 Total: -3.10 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -5.46 Total: -98.73 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.41 Total: -32.44 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.54 kcal Total: -77.82 1.84 -75.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332337861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.947 kcal (2) G-P(sol) polarization free energy of solvation -77.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds