Wall clock time and date at job start Tue Mar 31 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.53060 * 2 1 4 4 C 1.51581 * 110.59512 * 122.82406 * 2 1 3 5 5 O 1.21234 * 127.16037 * 298.51701 * 4 2 1 6 6 N 1.35123 * 105.50500 * 118.47959 * 4 2 1 7 7 C 1.46495 * 124.13773 * 180.02562 * 6 4 2 8 8 C 1.53038 * 109.46266 * 240.15565 * 7 6 4 9 9 C 1.53194 * 109.31527 * 178.61474 * 8 7 6 10 10 N 1.46918 * 108.77459 * 54.63453 * 9 8 7 11 11 C 1.36944 * 120.63075 * 126.37009 * 10 9 8 12 12 H 1.07995 * 119.99648 * 207.69531 * 11 10 9 13 13 C 1.38806 * 119.99982 * 27.69703 * 11 10 9 14 14 N 1.31625 * 120.00025 * 17.35188 * 13 11 10 15 15 Si 1.86799 * 120.00233 * 197.35170 * 13 11 10 16 16 H 1.48497 * 109.47099 * 89.99817 * 15 13 11 17 17 H 1.48504 * 109.47275 * 210.00233 * 15 13 11 18 18 H 1.48499 * 109.46670 * 330.00146 * 15 13 11 19 19 C 1.46934 * 118.74068 * 306.39076 * 10 9 8 20 20 C 1.53041 * 109.46114 * 120.08605 * 7 6 4 21 21 C 1.33790 * 111.68308 * 0.13455 * 6 4 2 22 22 O 1.21538 * 123.77047 * 179.91066 * 21 6 4 23 23 N 1.34526 * 112.46080 * 359.90608 * 21 6 4 24 24 C 1.46496 * 126.69184 * 180.02562 * 23 21 6 25 25 H 1.09000 * 109.47498 * 180.70495 * 1 2 3 26 26 H 1.09000 * 109.47538 * 300.70629 * 1 2 3 27 27 H 1.09006 * 109.47322 * 60.70542 * 1 2 3 28 28 H 1.08999 * 109.46024 * 0.11519 * 7 6 4 29 29 H 1.08999 * 109.49437 * 298.57077 * 8 7 6 30 30 H 1.09004 * 109.49811 * 58.66008 * 8 7 6 31 31 H 1.08997 * 109.58462 * 294.84482 * 9 8 7 32 32 H 1.08998 * 109.58402 * 174.42532 * 9 8 7 33 33 H 0.97000 * 120.00085 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.58528 * 293.82695 * 19 10 9 35 35 H 1.08998 * 109.58705 * 173.39491 * 19 10 9 36 36 H 1.08995 * 109.49505 * 301.33999 * 20 7 6 37 37 H 1.09002 * 109.49761 * 61.43459 * 20 7 6 38 38 H 1.09002 * 109.47432 * 269.96248 * 24 23 21 39 39 H 1.08997 * 109.47572 * 29.95993 * 24 23 21 40 40 H 1.09000 * 109.47419 * 149.96309 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9123 1.0208 0.0000 4 6 2.0632 -0.7692 1.1924 5 8 1.8890 -0.5153 2.3650 6 7 2.7715 -1.7958 0.6726 7 6 3.4683 -2.8037 1.4756 8 6 4.9639 -2.7676 1.1534 9 6 5.6939 -3.7987 2.0198 10 7 5.0657 -5.1120 1.8223 11 6 5.8179 -6.1983 1.4625 12 1 5.3688 -7.0039 0.9006 13 6 7.1575 -6.2640 1.8199 14 7 7.6238 -5.4833 2.7716 15 14 8.2987 -7.4602 0.9504 16 1 8.9033 -6.7966 -0.2325 17 1 9.3736 -7.8855 1.8827 18 1 7.5264 -8.6496 0.5099 19 6 3.6148 -5.2377 2.0177 20 6 2.9081 -4.1905 1.1513 21 6 2.7599 -1.7771 -0.6651 22 8 3.3287 -2.5985 -1.3572 23 7 2.0483 -0.7477 -1.1586 24 6 1.8307 -0.4320 -2.5725 25 1 -0.3634 -1.0276 0.0126 26 1 -0.3634 0.5248 0.8836 27 1 -0.3634 0.5029 -0.8963 28 1 3.3199 -2.5906 2.5342 29 1 5.1149 -3.0049 0.1003 30 1 5.3572 -1.7727 1.3625 31 1 5.6201 -3.5123 3.0688 32 1 6.7422 -3.8470 1.7250 33 1 8.5599 -5.5294 3.0216 34 1 3.3714 -5.0686 3.0666 35 1 3.2913 -6.2355 1.7215 36 1 1.8383 -4.2084 1.3590 37 1 3.0786 -4.4145 0.0982 38 1 2.6216 0.2313 -2.9226 39 1 1.8435 -1.3523 -3.1564 40 1 0.8652 0.0599 -2.6906 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332394631.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:04 Heat of formation + Delta-G solvation = -13.356658 kcal Electronic energy + Delta-G solvation = -23330.240341 eV Core-core repulsion = 19953.879510 eV Total energy + Delta-G solvation = -3376.360830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.35831 -38.52106 -37.75241 -36.20745 -34.98569 -32.52207 -31.35137 -30.34716 -29.71075 -27.42785 -25.18255 -24.56724 -22.50035 -22.21253 -21.77552 -20.21217 -18.98378 -17.39742 -17.01200 -16.80101 -15.94621 -15.64513 -15.09523 -14.77450 -14.51548 -14.43770 -13.81546 -13.65619 -13.50084 -13.10195 -13.07101 -12.75503 -12.69349 -12.55341 -12.45012 -12.09574 -11.58101 -11.32145 -11.00606 -10.70690 -10.54967 -10.36740 -10.25549 -10.20389 -9.96182 -9.74984 -9.51395 -9.22856 -9.01236 -8.42125 -6.66736 -5.75706 -3.17332 1.67113 2.15870 2.93692 3.15400 3.42696 3.49178 3.50508 3.92958 4.42992 4.53686 4.59021 4.81121 5.14015 5.20434 5.20825 5.28052 5.40893 5.42383 5.46370 5.49487 5.64038 5.68663 5.72538 5.85905 6.10657 6.27993 6.36036 6.43592 6.54779 6.66436 6.71371 6.76493 6.98540 7.27006 7.41073 7.44205 7.66078 7.84003 8.24016 8.47860 9.23917 9.87027 10.43106 11.33398 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029800 B = 0.004715 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.374880 B = 5937.457965 C = 6340.642296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.089 3.911 3 H 0.122 0.878 4 C 0.522 3.478 5 O -0.473 6.473 6 N -0.570 5.570 7 C 0.156 3.844 8 C -0.152 4.152 9 C 0.176 3.824 10 N -0.590 5.590 11 C -0.250 4.250 12 H 0.067 0.933 13 C 0.002 3.998 14 N -0.904 5.904 15 Si 0.903 3.097 16 H -0.287 1.287 17 H -0.292 1.292 18 H -0.279 1.279 19 C 0.151 3.849 20 C -0.144 4.144 21 C 0.697 3.303 22 O -0.526 6.526 23 N -0.634 5.634 24 C 0.123 3.877 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.021 0.979 32 H 0.094 0.906 33 H 0.254 0.746 34 H 0.021 0.979 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.391 13.541 -7.633 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 H 0.139 0.861 4 C 0.309 3.691 5 O -0.343 6.343 6 N -0.315 5.315 7 C 0.056 3.944 8 C -0.192 4.192 9 C 0.049 3.951 10 N -0.312 5.312 11 C -0.380 4.380 12 H 0.084 0.916 13 C -0.196 4.196 14 N -0.549 5.549 15 Si 0.733 3.267 16 H -0.214 1.214 17 H -0.218 1.218 18 H -0.204 1.204 19 C 0.024 3.976 20 C -0.184 4.184 21 C 0.400 3.600 22 O -0.398 6.398 23 N -0.375 5.375 24 C -0.018 4.018 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.967 13.158 -7.392 20.563 hybrid contribution 0.621 -0.376 -0.431 0.844 sum -13.347 12.782 -7.822 20.067 Atomic orbital electron populations 1.21910 0.91045 1.03772 1.03878 1.22071 0.97441 0.98048 0.84268 0.86084 1.20911 0.77502 0.80884 0.89806 1.90786 1.57387 1.69406 1.16708 1.47028 1.48533 1.28241 1.07685 1.21476 0.93010 0.85990 0.93910 1.22656 0.92381 1.00322 1.03810 1.20762 0.97820 0.82027 0.94448 1.44063 1.01396 1.05632 1.80156 1.19205 0.92282 0.98883 1.27594 0.91563 1.25022 0.98727 0.98942 0.96915 1.70030 1.14327 1.41940 1.28560 0.86271 0.80658 0.80714 0.79032 1.21428 1.21804 1.20413 1.20844 0.85643 0.95945 0.95201 1.22455 0.98252 0.94288 1.03430 1.15946 0.80027 0.82184 0.81869 1.91001 1.47314 1.40719 1.60745 1.47652 1.54503 1.28907 1.06438 1.21425 1.01296 1.02183 0.76915 0.91504 0.89871 0.90613 0.88473 0.90487 0.93245 0.96091 0.88825 0.93630 0.96157 0.92127 0.93122 0.90182 0.92270 0.90029 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.42 37.16 0.35 -0.68 16 2 C 0.09 0.86 4.04 -68.21 -0.28 0.58 16 3 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 4 C 0.52 7.36 7.67 -10.40 -0.08 7.28 16 5 O -0.47 -7.73 17.53 5.60 0.10 -7.63 16 6 N -0.57 -9.24 2.52 -113.46 -0.29 -9.53 16 7 C 0.16 2.92 2.60 -67.89 -0.18 2.74 16 8 C -0.15 -3.17 5.34 -26.61 -0.14 -3.31 16 9 C 0.18 4.34 5.31 -3.71 -0.02 4.32 16 10 N -0.59 -15.24 2.99 -172.32 -0.52 -15.76 16 11 C -0.25 -7.04 9.58 -15.06 -0.14 -7.19 16 12 H 0.07 1.84 7.89 -52.49 -0.41 1.43 16 13 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 14 N -0.90 -26.59 11.19 55.49 0.62 -25.97 16 15 Si 0.90 22.20 29.59 -169.99 -5.03 17.18 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C 0.15 3.28 6.52 -3.71 -0.02 3.25 16 20 C -0.14 -2.76 5.34 -26.61 -0.14 -2.90 16 21 C 0.70 11.12 7.73 -88.02 -0.68 10.44 16 22 O -0.53 -10.31 14.58 5.33 0.08 -10.23 16 23 N -0.63 -7.13 3.14 -180.28 -0.57 -7.69 16 24 C 0.12 0.94 11.04 59.84 0.66 1.60 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.35 7.51 -51.93 -0.39 -0.04 16 28 H 0.10 1.84 7.65 -51.93 -0.40 1.44 16 29 H 0.08 1.76 6.75 -51.93 -0.35 1.41 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 2.57 6.04 -51.93 -0.31 2.26 16 33 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.69 6.75 -51.93 -0.35 1.34 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.70 8.03 -51.93 -0.42 0.28 16 40 H 0.08 0.34 7.41 -51.93 -0.39 -0.05 16 LS Contribution 321.76 15.07 4.85 4.85 Total: -1.00 -33.40 321.76 -7.46 -40.86 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.95 Total: -2.19 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: -0.76 Total: 16.11 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.75 Total: -58.95 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.18 Total: -17.86 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.40 -7.46 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332394631.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.503 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds