Wall clock time and date at job start Tue Mar 31 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.53060 * 2 1 4 4 C 1.51581 * 110.59512 * 122.82406 * 2 1 3 5 5 O 1.21234 * 127.16037 * 298.51701 * 4 2 1 6 6 N 1.35123 * 105.50500 * 118.47959 * 4 2 1 7 7 C 1.46495 * 124.13773 * 180.02562 * 6 4 2 8 8 C 1.53038 * 109.46266 * 240.15565 * 7 6 4 9 9 C 1.53194 * 109.31527 * 178.61474 * 8 7 6 10 10 N 1.46918 * 108.77459 * 54.63453 * 9 8 7 11 11 C 1.36944 * 120.63075 * 126.37009 * 10 9 8 12 12 H 1.07995 * 119.99648 * 207.69531 * 11 10 9 13 13 C 1.38806 * 119.99982 * 27.69703 * 11 10 9 14 14 N 1.31625 * 120.00025 * 17.35188 * 13 11 10 15 15 Si 1.86799 * 120.00233 * 197.35170 * 13 11 10 16 16 H 1.48497 * 109.47099 * 89.99817 * 15 13 11 17 17 H 1.48504 * 109.47275 * 210.00233 * 15 13 11 18 18 H 1.48499 * 109.46670 * 330.00146 * 15 13 11 19 19 C 1.46934 * 118.74068 * 306.39076 * 10 9 8 20 20 C 1.53041 * 109.46114 * 120.08605 * 7 6 4 21 21 C 1.33790 * 111.68308 * 0.13455 * 6 4 2 22 22 O 1.21538 * 123.77047 * 179.91066 * 21 6 4 23 23 N 1.34526 * 112.46080 * 359.90608 * 21 6 4 24 24 C 1.46496 * 126.69184 * 180.02562 * 23 21 6 25 25 H 1.09000 * 109.47498 * 180.70495 * 1 2 3 26 26 H 1.09000 * 109.47538 * 300.70629 * 1 2 3 27 27 H 1.09006 * 109.47322 * 60.70542 * 1 2 3 28 28 H 1.08999 * 109.46024 * 0.11519 * 7 6 4 29 29 H 1.08999 * 109.49437 * 298.57077 * 8 7 6 30 30 H 1.09004 * 109.49811 * 58.66008 * 8 7 6 31 31 H 1.08997 * 109.58462 * 294.84482 * 9 8 7 32 32 H 1.08998 * 109.58402 * 174.42532 * 9 8 7 33 33 H 0.97000 * 120.00085 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.58528 * 293.82695 * 19 10 9 35 35 H 1.08998 * 109.58705 * 173.39491 * 19 10 9 36 36 H 1.08995 * 109.49505 * 301.33999 * 20 7 6 37 37 H 1.09002 * 109.49761 * 61.43459 * 20 7 6 38 38 H 1.09002 * 109.47432 * 269.96248 * 24 23 21 39 39 H 1.08997 * 109.47572 * 29.95993 * 24 23 21 40 40 H 1.09000 * 109.47419 * 149.96309 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9123 1.0208 0.0000 4 6 2.0632 -0.7692 1.1924 5 8 1.8890 -0.5153 2.3650 6 7 2.7715 -1.7958 0.6726 7 6 3.4683 -2.8037 1.4756 8 6 4.9639 -2.7676 1.1534 9 6 5.6939 -3.7987 2.0198 10 7 5.0657 -5.1120 1.8223 11 6 5.8179 -6.1983 1.4625 12 1 5.3688 -7.0039 0.9006 13 6 7.1575 -6.2640 1.8199 14 7 7.6238 -5.4833 2.7716 15 14 8.2987 -7.4602 0.9504 16 1 8.9033 -6.7966 -0.2325 17 1 9.3736 -7.8855 1.8827 18 1 7.5264 -8.6496 0.5099 19 6 3.6148 -5.2377 2.0177 20 6 2.9081 -4.1905 1.1513 21 6 2.7599 -1.7771 -0.6651 22 8 3.3287 -2.5985 -1.3572 23 7 2.0483 -0.7477 -1.1586 24 6 1.8307 -0.4320 -2.5725 25 1 -0.3634 -1.0276 0.0126 26 1 -0.3634 0.5248 0.8836 27 1 -0.3634 0.5029 -0.8963 28 1 3.3199 -2.5906 2.5342 29 1 5.1149 -3.0049 0.1003 30 1 5.3572 -1.7727 1.3625 31 1 5.6201 -3.5123 3.0688 32 1 6.7422 -3.8470 1.7250 33 1 8.5599 -5.5294 3.0216 34 1 3.3714 -5.0686 3.0666 35 1 3.2913 -6.2355 1.7215 36 1 1.8383 -4.2084 1.3590 37 1 3.0786 -4.4145 0.0982 38 1 2.6216 0.2313 -2.9226 39 1 1.8435 -1.3523 -3.1564 40 1 0.8652 0.0599 -2.6906 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332394631.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:04 Heat of formation + Delta-G solvation = -35.486723 kcal Electronic energy + Delta-G solvation = -23331.199972 eV Core-core repulsion = 19953.879510 eV Total energy + Delta-G solvation = -3377.320462 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.49704 -39.72417 -39.36268 -37.41813 -36.44701 -34.32148 -32.25410 -31.96511 -31.52613 -28.51424 -26.81507 -25.67244 -24.13363 -23.98356 -22.84960 -21.56211 -20.58848 -18.87621 -18.42322 -18.08184 -17.20577 -16.92966 -16.68907 -16.06313 -15.69696 -15.58488 -15.44284 -15.36203 -14.91184 -14.73447 -14.29852 -14.26225 -13.78163 -13.43316 -13.26681 -13.14631 -13.10378 -12.85758 -12.70347 -12.64779 -12.32815 -12.10070 -12.04057 -11.74295 -11.63521 -11.50246 -11.02810 -10.74119 -10.51609 -9.95068 -8.75486 -7.90923 -5.35724 0.57350 1.07125 1.45264 1.47892 1.56176 1.95096 1.99428 2.49492 2.95608 3.24630 3.52859 3.59405 3.82773 3.87222 3.96432 4.09258 4.17322 4.24021 4.37085 4.55462 4.66196 4.66407 4.70933 4.73788 4.79523 4.87798 4.92611 4.99173 5.04761 5.09117 5.19454 5.27476 5.40879 5.47288 5.59986 5.64235 6.16268 6.32807 6.35682 7.06740 7.10558 7.79985 8.32169 9.16548 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029800 B = 0.004715 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.374880 B = 5937.457965 C = 6340.642296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.101 3.899 3 H 0.158 0.842 4 C 0.516 3.484 5 O -0.498 6.498 6 N -0.579 5.579 7 C 0.163 3.837 8 C -0.134 4.134 9 C 0.184 3.816 10 N -0.609 5.609 11 C -0.265 4.265 12 H 0.065 0.935 13 C -0.047 4.047 14 N -0.933 5.933 15 Si 0.967 3.033 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.268 1.268 19 C 0.148 3.852 20 C -0.128 4.128 21 C 0.689 3.311 22 O -0.573 6.573 23 N -0.619 5.619 24 C 0.115 3.885 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.007 0.993 32 H 0.060 0.940 33 H 0.251 0.749 34 H 0.026 0.974 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.491 15.297 -8.929 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.006 4.006 3 H 0.175 0.825 4 C 0.305 3.695 5 O -0.370 6.370 6 N -0.323 5.323 7 C 0.062 3.938 8 C -0.174 4.174 9 C 0.058 3.942 10 N -0.332 5.332 11 C -0.395 4.395 12 H 0.083 0.917 13 C -0.243 4.243 14 N -0.579 5.579 15 Si 0.795 3.205 16 H -0.215 1.215 17 H -0.217 1.217 18 H -0.193 1.193 19 C 0.022 3.978 20 C -0.167 4.167 21 C 0.391 3.609 22 O -0.449 6.449 23 N -0.359 5.359 24 C -0.024 4.024 25 H 0.072 0.928 26 H 0.111 0.889 27 H 0.129 0.871 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.025 0.975 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.136 14.968 -8.713 23.672 hybrid contribution 1.202 -0.858 -0.022 1.477 sum -14.934 14.110 -8.735 22.325 Atomic orbital electron populations 1.21960 0.88299 1.03643 1.06085 1.22327 0.99187 0.98200 0.80844 0.82501 1.21715 0.76621 0.80350 0.90767 1.90775 1.58170 1.69875 1.18207 1.46927 1.48879 1.28446 1.08060 1.21085 0.91636 0.86820 0.94270 1.22338 0.94081 0.99544 1.01405 1.20510 0.96593 0.82960 0.94184 1.44293 1.02946 1.05459 1.80522 1.19504 0.93081 0.99463 1.27476 0.91681 1.25771 1.00002 1.00920 0.97597 1.70171 1.14321 1.43576 1.29854 0.85267 0.78574 0.78967 0.77655 1.21466 1.21717 1.19264 1.20978 0.83680 0.97171 0.96010 1.22215 0.99414 0.93727 1.01392 1.16172 0.80372 0.82926 0.81442 1.90972 1.49561 1.42828 1.61514 1.47864 1.52648 1.27182 1.08200 1.21779 1.04073 1.02149 0.74448 0.92794 0.88947 0.87148 0.88602 0.92567 0.91944 0.97460 0.92169 0.93951 0.95606 0.91857 0.90429 0.92165 0.91055 0.91389 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.42 71.98 0.68 -0.65 16 2 C 0.10 1.54 4.04 44.37 0.18 1.72 16 3 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 4 C 0.52 13.50 7.67 87.88 0.67 14.17 16 5 O -0.50 -15.52 17.53 -2.89 -0.05 -15.57 16 6 N -0.58 -18.21 2.52 -749.91 -1.89 -20.10 16 7 C 0.16 6.12 2.60 45.02 0.12 6.24 16 8 C -0.13 -5.74 5.34 30.67 0.16 -5.57 16 9 C 0.18 9.46 5.31 86.36 0.46 9.92 16 10 N -0.61 -32.40 2.99 -699.11 -2.09 -34.49 16 11 C -0.27 -15.31 9.58 84.03 0.81 -14.50 16 12 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 13 C -0.05 -2.74 4.91 84.86 0.42 -2.32 16 14 N -0.93 -56.59 11.19 21.65 0.24 -56.35 16 15 Si 0.97 46.51 29.59 68.60 2.03 48.54 16 16 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 17 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 19 C 0.15 6.50 6.52 86.36 0.56 7.06 16 20 C -0.13 -4.88 5.34 30.67 0.16 -4.72 16 21 C 0.69 21.27 7.73 179.44 1.39 22.66 16 22 O -0.57 -22.69 14.58 -3.84 -0.06 -22.75 16 23 N -0.62 -12.09 3.14 -842.72 -2.65 -14.74 16 24 C 0.11 1.34 11.04 127.77 1.41 2.75 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.11 0.34 7.51 -2.38 -0.02 0.32 16 28 H 0.10 3.63 7.65 -2.39 -0.02 3.61 16 29 H 0.06 2.66 6.75 -2.39 -0.02 2.64 16 30 H 0.06 2.45 8.14 -2.38 -0.02 2.44 16 31 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 3.48 6.04 -2.39 -0.01 3.46 16 33 H 0.25 14.70 8.31 -92.71 -0.77 13.92 16 34 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 2.70 7.93 -2.39 -0.02 2.68 16 36 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.06 2.58 6.75 -2.39 -0.02 2.56 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 1.03 8.03 -2.39 -0.02 1.01 16 40 H 0.12 0.40 7.41 -2.39 -0.02 0.39 16 Total: -1.00 -75.86 321.76 3.59 -72.27 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.03 Total: 6.46 kcal Atomic # 6 Polarization: 29.72 SS G_CDS: 7.02 Total: 36.74 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -6.38 Total: -125.69 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -0.11 Total: -38.31 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -75.86 3.59 -72.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332394631.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.779 kcal (2) G-P(sol) polarization free energy of solvation -75.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds