Wall clock time and date at job start Tue Mar 31 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00227 * 2 1 4 4 C 1.52996 * 109.47253 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47661 * 54.99589 * 4 3 2 6 6 O 1.42906 * 109.47101 * 294.99975 * 4 3 2 7 7 C 1.53005 * 109.46994 * 175.00281 * 4 3 2 8 8 C 1.50699 * 109.46845 * 184.99716 * 7 4 3 9 9 C 1.35359 * 126.75218 * 125.24603 * 8 7 4 10 10 N 1.35307 * 106.17418 * 180.12781 * 9 8 7 11 11 C 1.46507 * 125.86760 * 179.90748 * 10 9 8 12 12 C 1.52998 * 109.47302 * 123.86114 * 11 10 9 13 13 C 1.50706 * 115.55807 * 320.12601 * 12 11 10 14 14 H 1.08002 * 119.99956 * 97.27558 * 13 12 11 15 15 C 1.37882 * 120.00138 * 277.26342 * 13 12 11 16 16 N 1.31513 * 119.99803 * 8.48966 * 15 13 12 17 17 Si 1.86794 * 120.00039 * 188.48625 * 15 13 12 18 18 H 1.48505 * 109.47113 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47377 * 120.00201 * 17 15 13 20 20 H 1.48504 * 109.47367 * 240.00440 * 17 15 13 21 21 C 1.52999 * 117.50001 * 105.81648 * 12 11 10 22 22 C 1.53001 * 117.49897 * 174.44361 * 12 11 10 23 23 N 1.28721 * 108.26872 * 359.63804 * 10 9 8 24 24 N 1.28636 * 110.17138 * 0.22831 * 23 10 9 25 25 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46748 * 299.99978 * 1 2 3 27 27 H 1.09000 * 109.47235 * 59.99516 * 1 2 3 28 28 H 1.08998 * 109.46913 * 60.00245 * 3 2 1 29 29 H 1.09001 * 109.46910 * 300.00200 * 3 2 1 30 30 H 0.96709 * 113.99643 * 300.00223 * 6 4 3 31 31 H 1.08993 * 109.47247 * 64.99629 * 7 4 3 32 32 H 1.08992 * 109.46735 * 304.99343 * 7 4 3 33 33 H 1.07995 * 126.91029 * 0.02562 * 9 8 7 34 34 H 1.09004 * 109.46699 * 3.85996 * 11 10 9 35 35 H 1.09001 * 109.46869 * 243.85972 * 11 10 9 36 36 H 0.96998 * 119.99575 * 174.97665 * 16 15 13 37 37 H 1.08997 * 117.49473 * 214.97841 * 21 12 11 38 38 H 1.08994 * 117.49880 * 0.02562 * 21 12 11 39 39 H 1.09001 * 117.49860 * 359.97438 * 22 12 11 40 40 H 1.09001 * 117.49757 * 145.01865 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8426 6 8 3.9658 0.5791 1.2202 7 6 4.1573 2.5769 -0.1263 8 6 5.6537 2.4493 -0.2504 9 6 6.4312 2.9584 -1.2346 10 7 7.7005 2.5954 -0.9381 11 6 8.8925 2.9208 -1.7253 12 6 9.9061 3.6475 -0.8392 13 6 9.3260 4.6505 0.1245 14 1 9.1429 4.3697 1.1511 15 6 9.0293 5.9269 -0.3045 16 7 9.0934 6.2220 -1.5845 17 14 8.5362 7.2369 0.9325 18 1 8.5407 6.6545 2.2985 19 1 9.5019 8.3634 0.8720 20 1 7.1745 7.7344 0.6104 21 6 11.1384 2.8624 -0.3851 22 6 11.2770 3.9591 -1.4431 23 7 7.6815 1.9199 0.1575 24 7 6.4757 1.8150 0.5931 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.7191 1.0745 2.0132 31 1 3.9149 3.1644 0.7592 32 1 3.7604 3.0735 -1.0116 33 1 6.1039 3.5364 -2.0861 34 1 8.6124 3.5638 -2.5597 35 1 9.3371 2.0021 -2.1078 36 1 8.8150 7.0978 -1.8948 37 1 11.5295 3.0715 0.6105 38 1 11.2271 1.8284 -0.7181 39 1 11.4568 3.6460 -2.4716 40 1 11.7592 4.8895 -1.1434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335824658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:59 Heat of formation + Delta-G solvation = 22.106677 kcal Electronic energy + Delta-G solvation = -22174.388638 eV Core-core repulsion = 18799.565613 eV Total energy + Delta-G solvation = -3374.823025 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.30133 -38.55294 -36.97141 -36.50600 -33.31132 -32.11260 -32.05302 -29.81106 -27.49047 -26.80654 -25.50895 -25.29968 -22.02101 -21.40103 -21.14075 -20.54478 -19.20345 -17.17190 -16.53591 -16.38971 -16.09022 -15.57508 -15.40952 -14.75399 -14.71090 -14.65870 -14.01997 -13.61702 -13.55997 -13.12350 -12.79947 -12.45411 -12.10095 -11.80976 -11.78316 -11.65139 -11.10444 -11.03034 -10.81146 -10.61405 -10.58731 -10.35319 -10.08553 -9.99714 -9.87091 -9.69376 -9.07729 -8.97032 -8.58841 -8.32573 -8.25019 -6.21087 -4.24972 2.56660 3.18602 3.27569 3.27976 3.35117 3.42727 3.64340 4.30146 4.57531 4.76910 4.98802 5.01367 5.06922 5.11730 5.13329 5.16841 5.28206 5.32920 5.45835 5.46535 5.56277 5.76510 5.80002 5.81092 6.03749 6.08992 6.24516 6.29097 6.43100 6.66135 6.81329 6.86990 6.93563 7.01278 7.13708 7.32173 7.60235 7.76623 7.94073 8.25938 8.79442 9.42300 9.50176 10.87629 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022315 B = 0.004221 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.441634 B = 6632.606407 C = 7307.782104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.028 3.972 4 C 0.119 3.881 5 H 0.102 0.898 6 O -0.534 6.534 7 C -0.053 4.053 8 C -0.045 4.045 9 C -0.040 4.040 10 N -0.241 5.241 11 C 0.151 3.849 12 C 0.029 3.971 13 C -0.487 4.487 14 H 0.062 0.938 15 C 0.075 3.925 16 N -0.882 5.882 17 Si 0.888 3.112 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.284 1.284 21 C -0.197 4.197 22 C -0.153 4.153 23 N -0.073 5.073 24 N -0.268 5.268 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.368 0.632 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.175 0.825 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.261 0.739 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.733 -5.482 -2.189 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C -0.049 4.049 4 C 0.059 3.941 5 H 0.120 0.880 6 O -0.337 6.337 7 C -0.093 4.093 8 C -0.184 4.184 9 C -0.193 4.193 10 N -0.032 5.032 11 C 0.030 3.970 12 C 0.028 3.972 13 C -0.524 4.524 14 H 0.080 0.920 15 C -0.129 4.129 16 N -0.519 5.519 17 Si 0.715 3.285 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.210 1.210 21 C -0.235 4.235 22 C -0.192 4.192 23 N -0.053 5.053 24 N -0.134 5.134 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.215 0.785 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.192 0.808 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.441 -6.688 -1.704 13.362 hybrid contribution -1.281 2.436 -0.127 2.755 sum -12.722 -4.252 -1.831 13.538 Atomic orbital electron populations 1.22749 0.81515 1.02652 0.99746 1.87976 1.19174 1.27465 1.95321 1.23420 0.95658 0.85141 1.00721 1.21793 0.88846 0.93900 0.89564 0.88018 1.86721 1.80900 1.51559 1.14553 1.20339 0.88707 0.96914 1.03320 1.21291 0.96394 1.05075 0.95654 1.23114 0.84840 1.07171 1.04224 1.47083 1.07595 1.32057 1.16457 1.21828 0.83221 0.98674 0.93242 1.18919 0.85270 0.96147 0.96847 1.20393 1.42594 0.93864 0.95566 0.92002 1.24943 0.94656 0.98083 0.95180 1.69943 1.46688 1.22106 1.13178 0.86581 0.78041 0.81721 0.82114 1.19596 1.20785 1.20999 1.23039 1.06604 0.94746 0.99081 1.22603 1.02708 0.98609 0.95247 1.78218 1.15651 1.13597 0.97824 1.75034 0.95385 1.19151 1.23784 0.89725 0.94229 0.94260 0.92981 0.92522 0.78537 0.90279 0.89755 0.80822 0.87963 0.91369 0.92925 0.90054 0.91261 0.91534 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.64 10.67 -40.08 -0.43 -5.07 16 3 C 0.03 0.29 5.57 37.16 0.21 0.49 16 4 C 0.12 1.54 3.24 -26.73 -0.09 1.46 16 5 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 6 O -0.53 -8.11 12.49 -40.08 -0.50 -8.61 16 7 C -0.05 -0.70 5.48 -27.88 -0.15 -0.85 16 8 C -0.04 -0.82 6.46 -82.78 -0.53 -1.36 16 9 C -0.04 -0.77 11.49 -17.05 -0.20 -0.96 16 10 N -0.24 -5.14 2.78 -61.26 -0.17 -5.31 16 11 C 0.15 3.12 6.53 -4.04 -0.03 3.09 16 12 C 0.03 0.68 1.52 -155.66 -0.24 0.44 16 13 C -0.49 -12.82 8.06 -34.44 -0.28 -13.09 16 14 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 15 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 16 N -0.88 -23.05 13.09 55.43 0.73 -22.33 16 17 Si 0.89 20.91 29.55 -169.99 -5.02 15.88 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.20 -4.15 9.88 -26.73 -0.26 -4.42 16 22 C -0.15 -3.30 9.66 -26.73 -0.26 -3.56 16 23 N -0.07 -1.69 12.85 60.35 0.78 -0.91 16 24 N -0.27 -5.84 11.70 33.29 0.39 -5.45 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.37 4.37 9.05 45.56 0.41 4.78 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.89 8.12 -51.93 -0.42 0.46 16 33 H 0.17 2.75 8.06 -52.49 -0.42 2.32 16 34 H 0.10 2.08 8.07 -51.93 -0.42 1.66 16 35 H 0.07 1.25 7.95 -51.93 -0.41 0.83 16 36 H 0.26 6.58 8.32 -40.82 -0.34 6.24 16 37 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -31.50 345.62 -5.29 -36.79 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.46 Total: 5.34 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -0.81 Total: -15.55 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 1.72 Total: -34.00 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.93 Total: -13.68 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.50 -5.29 -36.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335824658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.900 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds