Wall clock time and date at job start Tue Mar 31 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00227 * 2 1 4 4 C 1.52996 * 109.47253 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47661 * 54.99589 * 4 3 2 6 6 O 1.42906 * 109.47101 * 294.99975 * 4 3 2 7 7 C 1.53005 * 109.46994 * 175.00281 * 4 3 2 8 8 C 1.50699 * 109.46845 * 184.99716 * 7 4 3 9 9 C 1.35359 * 126.75218 * 125.24603 * 8 7 4 10 10 N 1.35307 * 106.17418 * 180.12781 * 9 8 7 11 11 C 1.46507 * 125.86760 * 179.90748 * 10 9 8 12 12 C 1.52998 * 109.47302 * 123.86114 * 11 10 9 13 13 C 1.50706 * 115.55807 * 320.12601 * 12 11 10 14 14 H 1.08002 * 119.99956 * 97.27558 * 13 12 11 15 15 C 1.37882 * 120.00138 * 277.26342 * 13 12 11 16 16 N 1.31513 * 119.99803 * 8.48966 * 15 13 12 17 17 Si 1.86794 * 120.00039 * 188.48625 * 15 13 12 18 18 H 1.48505 * 109.47113 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47377 * 120.00201 * 17 15 13 20 20 H 1.48504 * 109.47367 * 240.00440 * 17 15 13 21 21 C 1.52999 * 117.50001 * 105.81648 * 12 11 10 22 22 C 1.53001 * 117.49897 * 174.44361 * 12 11 10 23 23 N 1.28721 * 108.26872 * 359.63804 * 10 9 8 24 24 N 1.28636 * 110.17138 * 0.22831 * 23 10 9 25 25 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46748 * 299.99978 * 1 2 3 27 27 H 1.09000 * 109.47235 * 59.99516 * 1 2 3 28 28 H 1.08998 * 109.46913 * 60.00245 * 3 2 1 29 29 H 1.09001 * 109.46910 * 300.00200 * 3 2 1 30 30 H 0.96709 * 113.99643 * 300.00223 * 6 4 3 31 31 H 1.08993 * 109.47247 * 64.99629 * 7 4 3 32 32 H 1.08992 * 109.46735 * 304.99343 * 7 4 3 33 33 H 1.07995 * 126.91029 * 0.02562 * 9 8 7 34 34 H 1.09004 * 109.46699 * 3.85996 * 11 10 9 35 35 H 1.09001 * 109.46869 * 243.85972 * 11 10 9 36 36 H 0.96998 * 119.99575 * 174.97665 * 16 15 13 37 37 H 1.08997 * 117.49473 * 214.97841 * 21 12 11 38 38 H 1.08994 * 117.49880 * 0.02562 * 21 12 11 39 39 H 1.09001 * 117.49860 * 359.97438 * 22 12 11 40 40 H 1.09001 * 117.49757 * 145.01865 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8426 6 8 3.9658 0.5791 1.2202 7 6 4.1573 2.5769 -0.1263 8 6 5.6537 2.4493 -0.2504 9 6 6.4312 2.9584 -1.2346 10 7 7.7005 2.5954 -0.9381 11 6 8.8925 2.9208 -1.7253 12 6 9.9061 3.6475 -0.8392 13 6 9.3260 4.6505 0.1245 14 1 9.1429 4.3697 1.1511 15 6 9.0293 5.9269 -0.3045 16 7 9.0934 6.2220 -1.5845 17 14 8.5362 7.2369 0.9325 18 1 8.5407 6.6545 2.2985 19 1 9.5019 8.3634 0.8720 20 1 7.1745 7.7344 0.6104 21 6 11.1384 2.8624 -0.3851 22 6 11.2770 3.9591 -1.4431 23 7 7.6815 1.9199 0.1575 24 7 6.4757 1.8150 0.5931 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.7191 1.0745 2.0132 31 1 3.9149 3.1644 0.7592 32 1 3.7604 3.0735 -1.0116 33 1 6.1039 3.5364 -2.0861 34 1 8.6124 3.5638 -2.5597 35 1 9.3371 2.0021 -2.1078 36 1 8.8150 7.0978 -1.8948 37 1 11.5295 3.0715 0.6105 38 1 11.2271 1.8284 -0.7181 39 1 11.4568 3.6460 -2.4716 40 1 11.7592 4.8895 -1.1434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335824658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:58 Heat of formation + Delta-G solvation = -0.086458 kcal Electronic energy + Delta-G solvation = -22175.351005 eV Core-core repulsion = 18799.565613 eV Total energy + Delta-G solvation = -3375.785391 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.83913 -39.45653 -38.64529 -37.51074 -34.81387 -34.06627 -33.39249 -30.97483 -28.78885 -28.00683 -27.44925 -26.21494 -23.17334 -23.02371 -22.71132 -21.97687 -20.92114 -18.63320 -17.76795 -17.37274 -17.15714 -17.00971 -16.84052 -16.63507 -15.79005 -15.72422 -15.54568 -15.08562 -14.79489 -14.66444 -13.96797 -13.79263 -13.50455 -13.22652 -13.01243 -12.90874 -12.77537 -12.51376 -12.45098 -12.16935 -12.05913 -11.79200 -11.71298 -11.49517 -10.92807 -10.88635 -10.68842 -10.57708 -10.42445 -10.04706 -9.75997 -8.19792 -6.27087 1.04628 1.29859 1.35782 1.45194 1.84171 1.90682 2.36520 2.80305 3.08322 3.41468 3.62570 3.67915 3.98519 4.05754 4.14828 4.19723 4.22149 4.35767 4.43875 4.46899 4.53751 4.57095 4.57873 4.62476 4.68163 4.74940 4.86940 4.88757 4.98941 5.16669 5.19822 5.35088 5.41723 5.54896 5.60003 5.70877 6.03899 6.28044 6.36213 6.74176 7.00940 7.40715 7.93384 8.87766 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022315 B = 0.004221 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.441634 B = 6632.606407 C = 7307.782104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.034 3.966 4 C 0.122 3.878 5 H 0.082 0.918 6 O -0.563 6.563 7 C -0.049 4.049 8 C -0.043 4.043 9 C -0.049 4.049 10 N -0.248 5.248 11 C 0.156 3.844 12 C 0.006 3.994 13 C -0.497 4.497 14 H 0.026 0.974 15 C 0.046 3.954 16 N -0.891 5.891 17 Si 0.930 3.070 18 H -0.287 1.287 19 H -0.277 1.277 20 H -0.274 1.274 21 C -0.188 4.188 22 C -0.145 4.145 23 N -0.115 5.115 24 N -0.294 5.294 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.380 0.620 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.204 0.796 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.264 0.736 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.308 -4.954 -3.316 15.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C -0.043 4.043 4 C 0.062 3.938 5 H 0.100 0.900 6 O -0.369 6.369 7 C -0.089 4.089 8 C -0.183 4.183 9 C -0.202 4.202 10 N -0.039 5.039 11 C 0.035 3.965 12 C 0.005 3.995 13 C -0.535 4.535 14 H 0.045 0.955 15 C -0.156 4.156 16 N -0.528 5.528 17 Si 0.757 3.243 18 H -0.213 1.213 19 H -0.202 1.202 20 H -0.200 1.200 21 C -0.226 4.226 22 C -0.183 4.183 23 N -0.094 5.094 24 N -0.159 5.159 25 H 0.109 0.891 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.228 0.772 31 H 0.109 0.891 32 H 0.136 0.864 33 H 0.221 0.779 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.017 -6.159 -2.824 14.675 hybrid contribution -0.821 2.257 0.254 2.415 sum -13.838 -3.902 -2.570 14.606 Atomic orbital electron populations 1.22926 0.79637 1.03584 1.00959 1.87921 1.21313 1.28595 1.95618 1.23341 0.93384 0.84944 1.02610 1.21737 0.90895 0.93058 0.88108 0.90034 1.86672 1.81617 1.52764 1.15841 1.20516 0.85318 0.97553 1.05475 1.22109 0.98563 1.03284 0.94378 1.23756 0.84111 1.07113 1.05208 1.47177 1.08476 1.32024 1.16211 1.21772 0.82708 0.99469 0.92504 1.18982 0.86301 0.96710 0.97546 1.20316 1.43328 0.95237 0.94649 0.95527 1.25325 0.94888 0.99018 0.96353 1.69962 1.46906 1.22461 1.13516 0.85947 0.78322 0.80158 0.79882 1.21277 1.20219 1.19991 1.23035 1.05145 0.95877 0.98502 1.22543 1.01288 0.97862 0.96592 1.78171 1.16593 1.15519 0.99164 1.74981 0.95719 1.20241 1.24949 0.89104 0.93148 0.92825 0.91302 0.90250 0.77239 0.89120 0.86389 0.77885 0.87729 0.89048 0.92637 0.91348 0.88882 0.88975 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -9.42 10.67 -144.34 -1.54 -10.96 16 3 C 0.03 0.62 5.57 71.98 0.40 1.02 16 4 C 0.12 2.99 3.24 30.59 0.10 3.09 16 5 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 6 O -0.56 -16.94 12.49 -144.34 -1.80 -18.74 16 7 C -0.05 -1.19 5.48 29.85 0.16 -1.02 16 8 C -0.04 -1.54 6.46 41.60 0.27 -1.28 16 9 C -0.05 -1.78 11.49 83.49 0.96 -0.82 16 10 N -0.25 -10.41 2.78 -347.72 -0.97 -11.38 16 11 C 0.16 6.25 6.53 86.38 0.56 6.82 16 12 C 0.01 0.26 1.52 -52.93 -0.08 0.18 16 13 C -0.50 -26.48 8.06 25.60 0.21 -26.27 16 14 H 0.03 1.57 7.83 -2.91 -0.02 1.55 16 15 C 0.05 2.40 5.39 84.66 0.46 2.85 16 16 N -0.89 -45.64 13.09 21.45 0.28 -45.36 16 17 Si 0.93 42.69 29.55 68.60 2.03 44.72 16 18 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 C -0.19 -7.81 9.88 30.60 0.30 -7.51 16 22 C -0.14 -6.08 9.66 30.60 0.30 -5.78 16 23 N -0.12 -5.38 12.85 37.02 0.48 -4.91 16 24 N -0.29 -12.89 11.70 -48.60 -0.57 -13.46 16 25 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.38 8.84 9.05 -74.05 -0.67 8.17 16 31 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.12 2.03 8.12 -2.39 -0.02 2.01 16 33 H 0.20 5.89 8.06 -2.91 -0.02 5.87 16 34 H 0.10 4.08 8.07 -2.39 -0.02 4.07 16 35 H 0.09 3.17 7.95 -2.39 -0.02 3.15 16 36 H 0.26 12.95 8.32 -92.71 -0.77 12.18 16 37 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.09 3.38 8.08 -2.39 -0.02 3.36 16 39 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 40 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -68.39 345.62 3.15 -65.24 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.36 Total: 21.98 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 4.88 Total: -27.12 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -0.78 Total: -75.11 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -3.34 Total: -29.70 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -68.39 3.15 -65.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335824658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.150 kcal (2) G-P(sol) polarization free energy of solvation -68.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds