Wall clock time and date at job start Tue Mar 31 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99878 * 2 1 4 4 C 1.53006 * 109.47099 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46950 * 65.00160 * 4 3 2 6 6 C 1.37100 * 119.99927 * 270.00299 * 5 4 3 7 7 H 1.07993 * 119.99698 * 145.16365 * 6 5 4 8 8 C 1.38947 * 119.99883 * 325.15797 * 6 5 4 9 9 N 1.31406 * 120.00266 * 337.41100 * 8 6 5 10 10 Si 1.86801 * 119.99809 * 157.41273 * 8 6 5 11 11 H 1.48495 * 109.47346 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46778 * 120.00207 * 10 8 6 13 13 H 1.48495 * 109.47055 * 239.99951 * 10 8 6 14 14 C 1.34776 * 119.99505 * 90.00012 * 5 4 3 15 15 O 1.21294 * 120.00415 * 4.89939 * 14 5 4 16 16 C 1.50707 * 119.99595 * 184.89779 * 14 5 4 17 17 C 1.52999 * 109.47224 * 177.67039 * 16 14 5 18 18 C 1.50693 * 109.47298 * 179.97438 * 17 16 14 19 19 N 1.30503 * 125.65259 * 270.27698 * 18 17 16 20 20 C 1.34130 * 109.25873 * 180.14796 * 19 18 17 21 21 C 1.34669 * 108.01831 * 359.61465 * 20 19 18 22 22 N 1.35048 * 125.65105 * 90.00175 * 18 17 16 23 23 C 1.46497 * 126.39395 * 359.97438 * 22 18 17 24 24 H 1.08999 * 109.47104 * 59.99638 * 1 2 3 25 25 H 1.09000 * 109.47195 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47110 * 299.99433 * 1 2 3 27 27 H 1.09008 * 109.46846 * 60.00487 * 3 2 1 28 28 H 1.09002 * 109.47422 * 300.00396 * 3 2 1 29 29 H 1.09001 * 109.47046 * 305.00277 * 4 3 2 30 30 H 1.08999 * 109.46928 * 185.00128 * 4 3 2 31 31 H 0.97005 * 120.00622 * 184.98331 * 9 8 6 32 32 H 1.09002 * 109.47167 * 57.67009 * 16 14 5 33 33 H 1.09004 * 109.46968 * 297.67517 * 16 14 5 34 34 H 1.09002 * 109.47074 * 59.99912 * 17 16 14 35 35 H 1.08997 * 109.46954 * 300.00478 * 17 16 14 36 36 H 1.07996 * 125.98907 * 179.88665 * 20 19 18 37 37 H 1.08003 * 126.59073 * 180.24696 * 21 20 19 38 38 H 1.08995 * 109.47359 * 270.02571 * 23 22 18 39 39 H 1.09001 * 109.47283 * 30.03345 * 23 22 18 40 40 H 1.09010 * 109.46762 * 150.02644 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.0968 -0.7986 -1.3371 7 1 3.8636 -1.3052 -2.2618 8 6 4.5199 -1.5280 -0.2327 9 7 5.2125 -0.9404 0.7168 10 14 4.1040 -3.3442 -0.0980 11 1 3.3222 -3.7627 -1.2891 12 1 5.3587 -4.1353 -0.0270 13 1 3.3011 -3.5784 1.1290 14 6 4.2614 1.3339 -2.3218 15 8 4.2404 2.5426 -2.2221 16 6 4.6072 0.6925 -3.6410 17 6 4.8295 1.7799 -4.6941 18 6 5.1758 1.1386 -6.0130 19 7 6.3794 0.8451 -6.4233 20 6 6.3082 0.2896 -7.6421 21 6 5.0105 0.2290 -7.9971 22 7 4.2918 0.7675 -6.9640 23 6 2.8354 0.9134 -6.9014 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8465 -0.8899 29 1 3.8515 0.5682 0.8409 30 1 3.9785 2.1765 0.0889 31 1 5.5696 -1.4636 1.4515 32 1 3.7893 0.0442 -3.9552 33 1 5.5168 0.1021 -3.5306 34 1 5.6475 2.4282 -4.3798 35 1 3.9199 2.3702 -4.8044 36 1 7.1445 -0.0533 -8.2331 37 1 4.6132 -0.1682 -8.9195 38 1 2.3997 0.0203 -6.4535 39 1 2.5831 1.7838 -6.2957 40 1 2.4398 1.0447 -7.9087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348718633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:34 Heat of formation + Delta-G solvation = -13.716836 kcal Electronic energy + Delta-G solvation = -22552.864395 eV Core-core repulsion = 19176.487947 eV Total energy + Delta-G solvation = -3376.376449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.86944 -38.68345 -36.99537 -34.74830 -33.87329 -33.00939 -31.53426 -29.59383 -28.27298 -26.89376 -25.85182 -24.82630 -23.97552 -21.54210 -21.17639 -19.41638 -18.96407 -17.02498 -16.76398 -16.09050 -15.49873 -15.42675 -15.29889 -14.83674 -14.37228 -14.33592 -14.10821 -13.73780 -13.50799 -13.05474 -12.86227 -12.66332 -12.36588 -12.04830 -11.95869 -11.54746 -11.33935 -11.13953 -11.03349 -10.95156 -10.58397 -10.41697 -10.28712 -10.01185 -9.71859 -9.43105 -9.13769 -8.97647 -8.46766 -8.10754 -7.45618 -6.28911 -3.92077 2.21461 2.94048 3.18985 3.29934 3.33216 3.37810 3.90355 4.20209 4.50475 4.61394 4.73642 4.90835 5.00585 5.09802 5.16568 5.35896 5.49743 5.62136 5.64826 5.69543 5.77555 5.90692 5.95252 6.00085 6.05148 6.14211 6.32319 6.43105 6.44220 6.62309 6.71125 6.80102 6.95848 7.32025 7.36224 7.56045 7.82924 8.03216 8.36291 8.42434 9.16782 9.55649 9.97112 10.74337 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.005183 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.221185 B = 5400.653078 C = 5934.141564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.055 3.945 4 C 0.107 3.893 5 N -0.427 5.427 6 C -0.325 4.325 7 H 0.087 0.913 8 C 0.052 3.948 9 N -0.863 5.863 10 Si 0.916 3.084 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.280 1.280 14 C 0.467 3.533 15 O -0.613 6.613 16 C -0.109 4.109 17 C -0.018 4.018 18 C 0.223 3.777 19 N -0.492 5.492 20 C -0.029 4.029 21 C -0.072 4.072 22 N -0.460 5.460 23 C 0.070 3.930 24 H 0.031 0.969 25 H 0.076 0.924 26 H 0.030 0.970 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.269 0.731 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.166 0.834 37 H 0.170 0.830 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.395 0.803 -10.052 12.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.017 4.017 5 N -0.144 5.144 6 C -0.453 4.453 7 H 0.104 0.896 8 C -0.153 4.153 9 N -0.500 5.500 10 Si 0.743 3.257 11 H -0.194 1.194 12 H -0.212 1.212 13 H -0.205 1.205 14 C 0.257 3.743 15 O -0.501 6.501 16 C -0.150 4.150 17 C -0.058 4.058 18 C -0.039 4.039 19 N -0.210 5.210 20 C -0.178 4.178 21 C -0.205 4.205 22 N -0.143 5.143 23 C -0.072 4.072 24 H 0.049 0.951 25 H 0.095 0.905 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.135 0.865 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.183 0.817 37 H 0.187 0.813 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.703 1.315 -9.328 11.561 hybrid contribution -1.292 -1.115 -0.452 1.765 sum -7.995 0.200 -9.780 12.633 Atomic orbital electron populations 1.22644 0.83628 1.01682 0.98751 1.88169 1.17166 1.27680 1.94990 1.23028 0.96596 0.84280 0.98355 1.21539 0.89186 0.99348 0.91608 1.43334 1.55730 1.06316 1.09050 1.19281 1.45701 0.80554 0.99735 0.89554 1.25199 0.94325 0.99792 0.96025 1.69819 1.30566 1.36763 1.12896 0.86064 0.78165 0.82858 0.78596 1.19435 1.21158 1.20531 1.20277 0.80529 0.86678 0.86858 1.90512 1.58989 1.14618 1.85979 1.21259 1.03508 0.97637 0.92579 1.19806 1.03283 0.97008 0.85682 1.23580 0.84296 1.02145 0.93888 1.70301 1.21543 1.17472 1.11679 1.22273 0.95425 1.05418 0.94656 1.22590 0.93080 1.09234 0.95557 1.45335 1.07804 1.45941 1.15245 1.22049 0.77214 1.04073 1.03903 0.95089 0.90496 0.95192 0.94319 0.94493 0.86459 0.90936 0.92101 0.90892 0.88805 0.88286 0.90454 0.81655 0.81301 0.90344 0.89235 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.63 10.18 -35.23 -0.36 -7.98 16 3 C 0.06 1.13 6.28 37.16 0.23 1.36 16 4 C 0.11 2.55 5.47 -4.04 -0.02 2.53 16 5 N -0.43 -10.69 2.52 -114.81 -0.29 -10.98 16 6 C -0.32 -8.32 8.23 -14.93 -0.12 -8.44 16 7 H 0.09 2.15 6.95 -52.49 -0.37 1.79 16 8 C 0.05 1.34 4.95 -17.47 -0.09 1.26 16 9 N -0.86 -23.16 11.34 55.50 0.63 -22.53 16 10 Si 0.92 20.39 29.61 -169.99 -5.03 15.35 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 C 0.47 11.16 7.63 -10.98 -0.08 11.07 16 15 O -0.61 -15.58 15.54 5.55 0.09 -15.49 16 16 C -0.11 -2.19 4.31 -27.88 -0.12 -2.31 16 17 C -0.02 -0.33 4.81 -27.89 -0.13 -0.46 16 18 C 0.22 3.80 7.16 -155.41 -1.11 2.69 16 19 N -0.49 -9.02 11.25 -10.82 -0.12 -9.14 16 20 C -0.03 -0.43 11.87 -17.81 -0.21 -0.65 16 21 C -0.07 -0.92 11.58 -16.56 -0.19 -1.11 16 22 N -0.46 -6.36 3.15 -121.28 -0.38 -6.74 16 23 C 0.07 0.69 10.97 59.85 0.66 1.35 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.12 3.03 5.37 -51.93 -0.28 2.75 16 30 H 0.07 1.74 7.36 -51.93 -0.38 1.35 16 31 H 0.27 6.82 8.32 -40.82 -0.34 6.48 16 32 H 0.07 1.38 7.68 -51.93 -0.40 0.99 16 33 H 0.09 2.03 8.10 -51.93 -0.42 1.61 16 34 H 0.10 1.90 8.08 -51.93 -0.42 1.48 16 35 H 0.08 1.27 7.05 -51.93 -0.37 0.90 16 36 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 37 H 0.17 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.85 7.05 -51.93 -0.37 0.49 16 40 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -32.25 338.23 -6.39 -38.64 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.94 Total: 4.90 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.08 Total: 8.87 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.16 Total: -49.39 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.27 Total: -23.48 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.25 -6.39 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348718633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.928 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds