Wall clock time and date at job start Tue Mar 31 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40086 * 126.03478 * 2 1 4 4 C 1.30836 * 108.20491 * 180.23888 * 3 2 1 5 5 C 1.39874 * 108.20018 * 359.78018 * 4 3 2 6 6 C 1.34950 * 126.04073 * 179.85650 * 2 1 3 7 7 C 1.50699 * 126.12421 * 0.02651 * 6 2 1 8 8 H 1.08999 * 109.50421 * 144.80478 * 7 6 2 9 9 C 1.53094 * 109.54269 * 264.91327 * 7 6 2 10 10 N 1.47012 * 109.25812 * 176.80517 * 9 7 6 11 11 C 1.46906 * 111.00384 * 177.60433 * 10 9 7 12 12 C 1.52994 * 109.47111 * 284.30086 * 11 10 9 13 13 H 1.09000 * 109.47549 * 56.93838 * 12 11 10 14 14 O 1.42908 * 109.47029 * 296.93884 * 12 11 10 15 15 C 1.50698 * 109.46999 * 176.94005 * 12 11 10 16 16 H 1.08005 * 120.00291 * 359.97438 * 15 12 11 17 17 C 1.37874 * 120.00139 * 179.97438 * 15 12 11 18 18 N 1.31521 * 119.99904 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 120.00245 * 179.97438 * 17 15 12 20 20 H 1.48509 * 109.46675 * 90.00279 * 19 17 15 21 21 H 1.48496 * 109.47090 * 210.00140 * 19 17 15 22 22 H 1.48493 * 109.47164 * 330.00554 * 19 17 15 23 23 C 1.47011 * 110.75773 * 301.38391 * 10 9 7 24 24 C 1.53101 * 109.25756 * 58.61121 * 23 10 9 25 25 O 1.43016 * 109.26063 * 303.15655 * 24 23 10 26 26 H 1.09001 * 109.46870 * 270.14356 * 1 2 3 27 27 H 1.08997 * 109.47479 * 30.14446 * 1 2 3 28 28 H 1.09001 * 109.47225 * 150.15027 * 1 2 3 29 29 H 1.08005 * 125.90253 * 179.81966 * 4 3 2 30 30 H 1.08003 * 126.03927 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.50624 * 296.73753 * 9 7 6 32 32 H 1.09001 * 109.50756 * 56.83068 * 9 7 6 33 33 H 1.08999 * 109.46334 * 44.29519 * 11 10 9 34 34 H 1.08999 * 109.46948 * 164.29161 * 11 10 9 35 35 H 0.96697 * 113.99601 * 300.00239 * 14 12 11 36 36 H 0.97001 * 119.99524 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.50853 * 298.68499 * 23 10 9 38 38 H 1.08994 * 109.51638 * 178.54983 * 23 10 9 39 39 H 1.08997 * 109.51080 * 183.21880 * 24 23 10 40 40 H 1.09001 * 109.50332 * 63.09187 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0052 5 6 3.5436 -0.6665 -0.0035 6 6 2.2590 -1.0912 0.0027 7 6 1.7974 -2.5258 0.0058 8 1 2.4855 -3.1307 -0.5848 9 6 1.7618 -3.0492 1.4440 10 7 1.2383 -4.4230 1.4472 11 6 1.2407 -4.9843 2.8048 12 6 2.6694 -5.3675 3.1956 13 1 3.3152 -4.4931 3.1151 14 8 3.1441 -6.3924 2.3200 15 6 2.6834 -5.8733 4.6151 16 1 1.7651 -5.9166 5.1820 17 6 3.8683 -6.2807 5.1902 18 7 4.9867 -6.2274 4.5000 19 14 3.8858 -6.9069 6.9500 20 1 3.6664 -8.3757 6.9548 21 1 5.1992 -6.6005 7.5715 22 1 2.8055 -6.2426 7.7225 23 6 -0.1091 -4.4685 0.8608 24 6 -0.0547 -3.9307 -0.5716 25 8 0.4856 -2.6066 -0.5583 26 1 -0.3633 0.0026 1.0277 27 1 -0.3634 0.8886 -0.5160 28 1 -0.3634 -0.8913 -0.5115 29 1 4.4054 1.3711 -0.0093 30 1 4.4211 -1.2962 -0.0064 31 1 2.7698 -3.0430 1.8587 32 1 1.1159 -2.4116 2.0475 33 1 0.8592 -4.2417 3.5055 34 1 0.6062 -5.8701 2.8328 35 1 2.6159 -7.2021 2.3397 36 1 5.8204 -6.5137 4.9048 37 1 -0.7855 -3.8538 1.4548 38 1 -0.4668 -5.4980 0.8497 39 1 -1.0607 -3.9090 -0.9907 40 1 0.5794 -4.5765 -1.1790 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351699656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:12 Heat of formation + Delta-G solvation = -1.646720 kcal Electronic energy + Delta-G solvation = -22806.108834 eV Core-core repulsion = 19430.255785 eV Total energy + Delta-G solvation = -3375.853049 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.27259 -39.35366 -36.47240 -34.47982 -33.14129 -32.33213 -32.09914 -29.63307 -28.63829 -26.68890 -26.39430 -24.14632 -23.92060 -21.15896 -20.81302 -20.09269 -19.87640 -17.23766 -16.81698 -16.21847 -15.58889 -15.42177 -14.89811 -14.86675 -14.76925 -14.53937 -14.11589 -13.76713 -13.49471 -13.33495 -13.29813 -12.64938 -12.55434 -12.19842 -12.11385 -11.61983 -11.41064 -11.20880 -10.98064 -10.92919 -10.82572 -10.55084 -10.35860 -10.05706 -9.85137 -9.17282 -9.03890 -8.60026 -8.44320 -8.20794 -7.78818 -6.02817 -4.21811 1.87088 2.61383 2.88252 3.25614 3.33017 3.35051 3.49073 4.08646 4.39224 4.69100 4.74559 4.94512 5.06691 5.20108 5.22606 5.24645 5.28370 5.32652 5.34227 5.59929 5.64778 5.74400 5.80494 5.89792 5.91127 5.99484 6.09041 6.19542 6.22742 6.48421 6.72386 6.73202 6.97868 7.05936 7.30851 7.38551 7.72652 7.78145 7.83968 8.16273 8.81900 9.43153 9.59211 11.01214 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020463 B = 0.004530 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.010412 B = 6179.627189 C = 6934.917539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.358 5.358 3 N -0.304 5.304 4 C 0.045 3.955 5 C -0.264 4.264 6 C 0.097 3.903 7 C 0.160 3.840 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.523 5.523 11 C 0.032 3.968 12 C 0.240 3.760 13 H 0.054 0.946 14 O -0.554 6.554 15 C -0.577 4.577 16 H 0.054 0.946 17 C 0.081 3.919 18 N -0.857 5.857 19 Si 0.888 3.112 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.014 3.986 24 C 0.066 3.934 25 O -0.388 6.388 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.184 0.816 30 H 0.152 0.848 31 H 0.098 0.902 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.341 0.659 36 H 0.261 0.739 37 H 0.034 0.966 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.012 7.816 -10.299 15.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.140 5.140 3 N -0.126 5.126 4 C -0.139 4.139 5 C -0.293 4.293 6 C -0.031 4.031 7 C 0.101 3.899 8 H 0.114 0.886 9 C -0.092 4.092 10 N -0.248 5.248 11 C -0.096 4.096 12 C 0.182 3.818 13 H 0.072 0.928 14 O -0.355 6.355 15 C -0.615 4.615 16 H 0.072 0.928 17 C -0.125 4.125 18 N -0.492 5.492 19 Si 0.715 3.285 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.114 4.114 24 C -0.010 4.010 25 O -0.308 6.308 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.201 0.799 30 H 0.170 0.830 31 H 0.116 0.884 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.184 0.816 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.098 9.146 -10.795 16.821 hybrid contribution -0.317 -1.146 1.975 2.306 sum -9.415 7.999 -8.819 15.179 Atomic orbital electron populations 1.22149 0.74094 1.05150 1.03178 1.48424 1.06686 1.02894 1.56005 1.77308 1.01966 1.08261 1.25093 1.23778 0.95192 0.94836 1.00139 1.21227 0.96059 0.95205 1.16847 1.20746 0.91414 0.88940 1.02042 1.20619 0.85165 0.89036 0.95091 0.88578 1.22660 1.02664 0.89281 0.94602 1.62276 1.20576 1.18154 1.23761 1.23159 1.03123 0.97912 0.85356 1.19271 0.86521 0.88488 0.87520 0.92833 1.86576 1.57278 1.25606 1.66064 1.21636 0.94197 1.46847 0.98869 0.92808 1.25008 0.95516 0.94648 0.97337 1.70081 0.98475 1.44567 1.36088 0.86687 0.77482 0.79289 0.84993 1.20487 1.21058 1.19924 1.22811 0.91307 1.01586 0.95711 1.22702 0.99007 0.83212 0.96118 1.87797 1.31250 1.29154 1.82589 0.91560 0.90169 0.86926 0.79943 0.83036 0.88361 0.94809 0.95126 0.91689 0.81569 0.92936 0.94791 0.89705 0.88562 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 11.09 59.85 0.66 1.75 16 2 N -0.36 -5.22 4.01 -63.89 -0.26 -5.48 16 3 N -0.30 -4.64 12.58 30.63 0.39 -4.25 16 4 C 0.05 0.61 12.03 -17.36 -0.21 0.40 16 5 C -0.26 -3.72 10.72 -40.01 -0.43 -4.15 16 6 C 0.10 1.44 6.05 -82.27 -0.50 0.94 16 7 C 0.16 2.30 3.23 -27.84 -0.09 2.21 16 8 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 9 C 0.04 0.61 4.74 -3.71 -0.02 0.59 16 10 N -0.52 -8.89 4.58 -234.31 -1.07 -9.96 16 11 C 0.03 0.62 4.58 -3.82 -0.02 0.61 16 12 C 0.24 5.90 2.90 -27.89 -0.08 5.82 16 13 H 0.05 1.46 6.80 -51.93 -0.35 1.11 16 14 O -0.55 -13.99 12.65 -35.23 -0.45 -14.43 16 15 C -0.58 -15.52 8.76 -34.44 -0.30 -15.82 16 16 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 17 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 18 N -0.86 -25.02 12.84 55.43 0.71 -24.30 16 19 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 23 C 0.01 0.19 5.60 -3.71 -0.02 0.17 16 24 C 0.07 0.75 7.01 37.21 0.26 1.01 16 25 O -0.39 -5.01 7.21 -35.23 -0.25 -5.27 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.11 1.23 5.20 -51.93 -0.27 0.96 16 29 H 0.18 1.78 8.06 -52.48 -0.42 1.36 16 30 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 31 H 0.10 1.83 6.77 -51.93 -0.35 1.48 16 32 H 0.03 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.03 0.61 7.99 -51.93 -0.41 0.20 16 34 H 0.06 1.22 7.86 -51.93 -0.41 0.82 16 35 H 0.34 7.69 9.04 45.56 0.41 8.10 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 1.05 8.02 -51.93 -0.42 0.63 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -31.95 327.66 -7.00 -38.95 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.15 Total: 8.27 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.84 Total: -4.33 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.23 Total: -44.00 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.70 Total: -19.70 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.95 -7.00 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351699656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.307 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds