Wall clock time and date at job start Tue Mar 31 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47239 * 2 1 4 4 C 1.53000 * 109.47305 * 120.00700 * 2 1 3 5 5 N 1.46497 * 109.47054 * 175.00217 * 4 2 1 6 6 N 1.40122 * 126.16708 * 95.00093 * 5 4 2 7 7 H 0.97001 * 125.90742 * 359.97259 * 6 5 4 8 8 C 1.36600 * 108.17726 * 180.24460 * 6 5 4 9 9 C 1.50702 * 125.77113 * 179.74648 * 8 6 5 10 10 C 1.50693 * 109.47444 * 274.99869 * 9 8 6 11 11 O 1.21276 * 120.00381 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.97438 * 10 9 8 13 13 C 1.46508 * 120.00041 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47178 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99798 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99806 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99845 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99671 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47571 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47246 * 119.99788 * 18 16 14 21 21 H 1.48502 * 109.47010 * 239.99369 * 18 16 14 22 22 C 1.34826 * 108.45456 * 359.62656 * 8 6 5 23 23 C 1.34876 * 126.16368 * 275.01994 * 5 4 2 24 24 O 1.21782 * 126.18756 * 359.95661 * 23 5 4 25 25 H 1.08997 * 109.47407 * 299.99652 * 1 2 3 26 26 H 1.09000 * 109.47306 * 59.99955 * 1 2 3 27 27 H 1.09003 * 109.47196 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46763 * 240.00548 * 2 1 3 29 29 H 1.09005 * 109.47162 * 60.00245 * 3 2 1 30 30 H 1.09000 * 109.47651 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47393 * 300.00607 * 3 2 1 32 32 H 1.08997 * 109.47278 * 54.99506 * 4 2 1 33 33 H 1.09005 * 109.46226 * 294.99885 * 4 2 1 34 34 H 1.09002 * 109.47282 * 35.00507 * 9 8 6 35 35 H 1.09007 * 109.46502 * 155.00044 * 9 8 6 36 36 H 0.96995 * 120.00303 * 0.02562 * 12 10 9 37 37 H 1.08996 * 109.46929 * 300.00637 * 13 12 10 38 38 H 1.09002 * 109.46370 * 60.00142 * 13 12 10 39 39 H 0.97006 * 119.99765 * 180.02562 * 17 16 14 40 40 H 1.08005 * 125.95817 * 180.14511 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8264 1.1904 6 7 4.4168 0.0560 1.7772 7 1 4.1949 0.8459 2.2945 8 6 5.6771 -0.3853 1.4893 9 6 6.9615 0.2732 1.9226 10 6 7.3263 1.3570 0.9413 11 8 6.6134 1.5739 -0.0155 12 7 8.4444 2.0862 1.1275 13 6 8.7994 3.1396 0.1732 14 6 10.0838 3.7981 0.6066 15 1 10.5856 3.4650 1.5031 16 6 10.6181 4.8259 -0.1412 17 7 10.0072 5.2311 -1.2331 18 14 12.2104 5.6416 0.3957 19 1 12.6946 5.0063 1.6475 20 1 13.2328 5.4805 -0.6692 21 1 11.9695 7.0872 0.6359 22 6 5.5776 -1.5112 0.7541 23 6 4.2040 -1.7898 0.5615 24 8 3.7410 -2.7296 -0.0593 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6054 -1.7199 1.2950 33 1 1.7516 -0.1584 2.1369 34 1 6.8303 0.7089 2.9131 35 1 7.7579 -0.4704 1.9554 36 1 9.0145 1.9131 1.8929 37 1 8.9313 2.7034 -0.8170 38 1 8.0028 3.8828 0.1396 39 1 10.3833 5.9539 -1.7594 40 1 6.4026 -2.0961 0.3750 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351780976.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:53 Heat of formation + Delta-G solvation = -14.369587 kcal Electronic energy + Delta-G solvation = -21767.255212 eV Core-core repulsion = 18390.850457 eV Total energy + Delta-G solvation = -3376.404754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.54764 -38.94697 -36.85551 -36.61852 -34.31950 -32.93599 -32.38761 -29.92352 -29.74986 -27.35476 -27.22681 -25.62137 -22.81730 -21.29250 -20.92511 -20.11705 -19.77749 -18.16411 -17.25562 -16.04639 -15.76023 -15.56334 -15.54207 -15.05834 -14.97087 -14.42461 -14.14770 -13.96118 -13.53543 -13.26308 -12.99113 -12.88986 -12.55499 -12.42467 -12.27149 -12.12698 -12.02270 -11.59190 -11.50451 -11.18427 -11.01633 -10.96889 -10.96017 -10.38564 -9.65429 -9.46033 -9.40829 -9.01320 -8.82133 -8.01705 -7.77049 -6.23375 -4.30896 1.58336 1.77690 3.15606 3.19135 3.26443 3.29000 3.41200 3.78508 4.00276 4.30565 4.45104 4.49910 4.58447 4.83034 4.99113 5.02260 5.13289 5.21144 5.31725 5.38339 5.41414 5.44328 5.53807 5.64010 5.71262 5.87270 5.94418 5.99879 6.12861 6.16526 6.45052 7.19313 7.23766 7.28393 7.42271 7.53049 7.57434 7.88862 8.43548 8.47501 8.67729 8.94297 9.35994 10.86728 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027343 B = 0.003238 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.771063 B = 8645.054795 C = 9242.624133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.151 4.151 4 C 0.141 3.859 5 N -0.414 5.414 6 N -0.489 5.489 7 H 0.437 0.563 8 C 0.220 3.780 9 C -0.093 4.093 10 C 0.498 3.502 11 O -0.543 6.543 12 N -0.709 5.709 13 C 0.250 3.750 14 C -0.545 4.545 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.340 4.340 23 C 0.536 3.464 24 O -0.562 6.562 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.392 0.608 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.288 -8.707 10.433 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.209 4.209 4 C 0.020 3.980 5 N -0.237 5.237 6 N -0.210 5.210 7 H 0.282 0.718 8 C 0.102 3.898 9 C -0.135 4.135 10 C 0.281 3.719 11 O -0.421 6.421 12 N -0.357 5.357 13 C 0.129 3.871 14 C -0.583 4.583 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.371 4.371 23 C 0.335 3.665 24 O -0.443 6.443 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.144 0.856 36 H 0.225 0.775 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.332 -8.873 9.261 19.232 hybrid contribution 1.080 1.058 0.787 1.705 sum -13.251 -7.814 10.047 18.374 Atomic orbital electron populations 1.21758 0.94054 1.02053 1.02212 1.21611 0.96159 0.97198 0.98880 1.21879 1.02205 0.94988 1.01786 1.21780 0.74898 1.02658 0.98700 1.48445 1.02206 1.21765 1.51294 1.43825 0.99759 1.24836 1.52596 0.71779 1.20140 0.84316 0.92391 0.92984 1.20611 0.93382 0.99067 1.00451 1.20073 0.82512 0.82816 0.86471 1.90741 1.51309 1.68961 1.31124 1.46449 1.23498 1.36410 1.29362 1.19142 0.95594 0.84331 0.88008 1.21244 1.07738 1.18526 1.10801 0.91764 1.24957 0.97835 0.96546 0.94688 1.69981 1.39243 1.27968 1.14969 0.86356 0.82689 0.79177 0.78658 1.19599 1.20745 1.20815 1.21640 0.97365 1.03713 1.14396 1.16959 0.87781 0.81678 0.80086 1.90827 1.77093 1.31369 1.44978 0.92556 0.92014 0.92322 0.90031 0.92998 0.91771 0.92235 0.88354 0.89895 0.87383 0.85581 0.77492 0.95363 0.95518 0.92429 0.82404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.19 37.16 0.34 -0.77 16 2 C -0.12 -1.23 3.12 -90.62 -0.28 -1.51 16 3 C -0.15 -1.65 9.08 37.15 0.34 -1.31 16 4 C 0.14 1.39 5.75 -4.04 -0.02 1.37 16 5 N -0.41 -5.38 3.14 -63.24 -0.20 -5.57 16 6 N -0.49 -5.55 6.72 33.67 0.23 -5.33 16 7 H 0.44 3.71 8.96 -182.58 -1.64 2.07 16 8 C 0.22 2.81 5.70 -81.68 -0.47 2.34 16 9 C -0.09 -1.01 6.23 -29.04 -0.18 -1.19 16 10 C 0.50 8.55 7.82 -10.99 -0.09 8.47 16 11 O -0.54 -11.96 16.03 5.56 0.09 -11.87 16 12 N -0.71 -13.16 5.55 -61.47 -0.34 -13.50 16 13 C 0.25 6.23 5.43 -5.19 -0.03 6.20 16 14 C -0.54 -14.06 9.28 -34.44 -0.32 -14.38 16 15 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.88 -25.38 13.29 55.43 0.74 -24.64 16 18 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 C -0.34 -5.14 10.73 -39.56 -0.42 -5.57 16 23 C 0.54 8.97 7.95 -14.98 -0.12 8.85 16 24 O -0.56 -11.24 17.92 5.12 0.09 -11.15 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.88 7.22 -51.93 -0.37 0.51 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.39 5.97 8.32 -40.82 -0.34 5.63 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.16 2.24 8.06 -52.48 -0.42 1.82 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -35.56 345.42 -7.94 -43.50 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.38 Total: 4.11 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.35 Total: 4.11 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.42 Total: -49.05 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.18 Total: -23.02 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.56 -7.94 -43.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351780976.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.131 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds