Wall clock time and date at job start Tue Mar 31 2020 05:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.46968 * 2 1 4 4 N 1.29937 * 125.38156 * 89.99337 * 3 2 1 5 5 C 1.36070 * 108.47640 * 180.02562 * 4 3 2 6 6 C 1.47419 * 126.44451 * 179.97438 * 5 4 3 7 7 O 1.21616 * 120.00076 * 173.51194 * 6 5 4 8 8 N 1.34778 * 120.00249 * 353.51318 * 6 5 4 9 9 C 1.46499 * 120.00015 * 3.44086 * 8 6 5 10 10 C 1.46497 * 119.99851 * 183.43375 * 8 6 5 11 11 C 1.53003 * 109.46905 * 90.00499 * 10 8 6 12 12 C 1.53000 * 109.47171 * 179.97438 * 11 10 8 13 13 N 1.46501 * 109.46973 * 179.97438 * 12 11 10 14 14 C 1.36944 * 120.00174 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99388 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00128 * 180.02562 * 14 13 12 17 17 N 1.31614 * 119.99888 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99633 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46807 * 90.00313 * 18 16 14 20 20 H 1.48506 * 109.46607 * 210.00004 * 18 16 14 21 21 H 1.48491 * 109.47273 * 329.99865 * 18 16 14 22 22 C 1.36092 * 107.10514 * 0.02562 * 5 4 3 23 23 O 1.34052 * 125.37718 * 270.30625 * 3 2 1 24 24 H 1.09001 * 109.47255 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47500 * 300.00087 * 1 2 3 26 26 H 1.09004 * 109.47181 * 60.00604 * 1 2 3 27 27 H 1.08994 * 109.47390 * 239.99382 * 2 1 3 28 28 H 1.09001 * 109.46760 * 119.99136 * 2 1 3 29 29 H 1.09000 * 109.47141 * 84.08934 * 9 8 6 30 30 H 1.09000 * 109.46854 * 204.08957 * 9 8 6 31 31 H 1.09004 * 109.46903 * 324.08946 * 9 8 6 32 32 H 1.09005 * 109.47432 * 209.99993 * 10 8 6 33 33 H 1.09005 * 109.47501 * 330.00536 * 10 8 6 34 34 H 1.09002 * 109.47313 * 299.99652 * 11 10 8 35 35 H 1.08997 * 109.47254 * 59.99593 * 11 10 8 36 36 H 1.08999 * 109.46969 * 299.99554 * 12 11 10 37 37 H 1.08997 * 109.47301 * 59.99700 * 12 11 10 38 38 H 0.97000 * 120.00421 * 0.02562 * 13 12 11 39 39 H 0.96998 * 119.99937 * 180.02562 * 17 16 14 40 40 H 1.07995 * 126.52520 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2829 2.1302 1.0594 5 6 2.7164 3.3578 0.6637 6 6 3.1098 4.4732 1.5437 7 8 3.5925 5.4826 1.0672 8 7 2.9347 4.3743 2.8764 9 6 2.4238 3.1304 3.4577 10 6 3.2553 5.5106 3.7436 11 6 2.0170 6.3947 3.9044 12 6 2.3516 7.5812 4.8107 13 7 1.1660 8.4280 4.9642 14 6 1.2261 9.5566 5.7374 15 1 2.1477 9.8226 6.2338 16 6 0.1026 10.3587 5.8833 17 7 -1.0205 10.0342 5.2788 18 14 0.1850 11.8986 6.9375 19 1 0.5939 13.0525 6.0971 20 1 -1.1509 12.1656 7.5288 21 1 1.1771 11.7017 8.0247 22 6 2.7172 3.3625 -0.6972 23 8 2.2855 2.1545 -1.0930 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.2483 2.4328 3.6054 30 1 1.9527 3.3444 4.4171 31 1 1.6903 2.6885 2.7832 32 1 3.5697 5.1445 4.7210 33 1 4.0616 6.0925 3.2970 34 1 1.7025 6.7609 2.9271 35 1 1.2107 5.8129 4.3510 36 1 2.6657 7.2146 5.7880 37 1 3.1580 8.1631 4.3645 38 1 0.3382 8.1889 4.5187 39 1 -1.8055 10.5949 5.3804 40 1 3.0071 4.1829 -1.3369 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498538866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:04 Heat of formation + Delta-G solvation = 0.783426 kcal Electronic energy + Delta-G solvation = -21413.573221 eV Core-core repulsion = 18037.825551 eV Total energy + Delta-G solvation = -3375.747670 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.72809 -39.70356 -36.16483 -35.43940 -34.69706 -34.26053 -32.13083 -30.02816 -29.53007 -26.80565 -25.88308 -24.75196 -23.79117 -22.45117 -21.45788 -20.83757 -19.64491 -17.74988 -17.18394 -16.98038 -16.74889 -16.14466 -15.20810 -15.15571 -14.94053 -14.52490 -14.41297 -13.77762 -13.60537 -13.28740 -13.13955 -12.96121 -12.89272 -12.62211 -12.25140 -11.94837 -11.86811 -11.68528 -11.46021 -10.89327 -10.81302 -10.72779 -10.63959 -10.34156 -10.12529 -9.96578 -9.66558 -9.30584 -8.81580 -8.56678 -6.86133 -5.70816 -2.99376 0.88203 1.74742 2.27065 2.90883 3.20390 3.47782 3.51944 3.52724 3.54303 4.37456 4.43599 4.64335 4.64701 4.70374 4.86600 5.22063 5.25950 5.27753 5.29416 5.33890 5.38782 5.48992 5.56104 5.61907 5.67461 5.73676 5.75850 5.98187 6.12825 6.14817 6.35792 6.44755 6.60722 6.92122 6.94168 7.16413 7.37935 7.75134 8.08936 8.48217 9.58895 10.17903 10.52592 11.52392 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.002812 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.011928 B = 9956.322185 C =10189.002443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.027 4.027 3 C 0.193 3.807 4 N -0.455 5.455 5 C -0.065 4.065 6 C 0.596 3.404 7 O -0.534 6.534 8 N -0.597 5.597 9 C 0.074 3.926 10 C 0.118 3.882 11 C -0.139 4.139 12 C 0.157 3.843 13 N -0.734 5.734 14 C -0.238 4.238 15 H 0.071 0.929 16 C -0.017 4.017 17 N -0.935 5.935 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.011 3.989 23 O -0.196 6.196 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.019 0.981 37 H 0.021 0.979 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 -24.672 -12.026 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.065 4.065 3 C -0.016 4.016 4 N -0.185 5.185 5 C -0.185 4.185 6 C 0.382 3.618 7 O -0.411 6.411 8 N -0.328 5.328 9 C -0.069 4.069 10 C -0.004 4.004 11 C -0.178 4.178 12 C 0.029 3.971 13 N -0.378 5.378 14 C -0.369 4.369 15 H 0.089 0.911 16 C -0.212 4.212 17 N -0.584 5.584 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.062 4.062 23 O -0.082 6.082 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.039 0.961 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.607 -24.233 -11.525 27.635 hybrid contribution -0.245 1.124 -0.189 1.165 sum 6.362 -23.109 -11.713 26.678 Atomic orbital electron populations 1.21806 0.92835 1.03170 1.03245 1.20121 0.97031 0.83924 1.05386 1.26530 0.99548 0.96933 0.78560 1.70973 1.15943 1.02718 1.28902 1.21823 1.09322 0.94269 0.93044 1.16824 0.78556 0.84599 0.81788 1.90845 1.44978 1.30339 1.74908 1.47681 1.63862 1.15509 1.05704 1.22187 1.00153 0.84801 0.99710 1.21575 0.98612 0.86698 0.93556 1.22066 0.97278 0.97170 1.01270 1.20540 0.91232 0.90043 0.95326 1.42363 1.09389 1.26727 1.59308 1.19259 0.96414 0.99718 1.21493 0.91131 1.24757 0.95872 0.99486 1.01103 1.69668 1.01240 1.39790 1.47679 0.86164 0.76644 0.83352 0.79901 1.21720 1.21792 1.20756 1.25297 0.98643 0.86582 0.95716 1.84381 1.63296 1.22607 1.37946 0.90743 0.91511 0.92059 0.88756 0.87387 0.92838 0.91430 0.88262 0.90188 0.89562 0.91641 0.91899 0.96328 0.96144 0.78327 0.93562 0.75276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.89 37.16 0.37 -0.33 16 2 C -0.03 -0.13 6.56 -27.88 -0.18 -0.31 16 3 C 0.19 1.73 7.56 -13.08 -0.10 1.63 16 4 N -0.45 -5.09 7.86 -7.65 -0.06 -5.15 16 5 C -0.06 -0.83 6.66 -83.02 -0.55 -1.38 16 6 C 0.60 9.19 7.67 -12.52 -0.10 9.10 16 7 O -0.53 -9.72 16.45 5.26 0.09 -9.63 16 8 N -0.60 -8.49 2.87 -182.84 -0.53 -9.02 16 9 C 0.07 0.85 9.61 59.85 0.58 1.42 16 10 C 0.12 1.76 5.41 -4.04 -0.02 1.74 16 11 C -0.14 -2.50 5.65 -26.73 -0.15 -2.65 16 12 C 0.16 3.37 6.26 -4.04 -0.03 3.34 16 13 N -0.73 -19.85 5.60 -59.91 -0.34 -20.19 16 14 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 15 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 16 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 17 N -0.93 -29.34 13.06 55.49 0.72 -28.62 16 18 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C 0.01 0.12 11.95 29.96 0.36 0.48 16 23 O -0.20 -1.88 10.73 6.50 0.07 -1.81 16 24 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.71 8.03 -51.93 -0.42 0.30 16 31 H 0.10 1.16 5.30 -51.93 -0.28 0.88 16 32 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 33 H 0.09 1.37 7.38 -51.93 -0.38 0.98 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.38 10.89 7.67 -40.82 -0.31 10.58 16 39 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.23 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 342.22 15.07 5.16 5.16 Total: -1.00 -35.54 342.22 -5.99 -41.52 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.00 Total: 4.36 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -0.07 Total: 5.30 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: -0.20 Total: -62.98 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.16 Total: -11.44 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.54 -5.99 -41.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498538866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.304 kcal (2) G-P(sol) polarization free energy of solvation -35.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds