Wall clock time and date at job start Tue Mar 31 2020 05:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.46968 * 2 1 4 4 N 1.29937 * 125.38156 * 89.99337 * 3 2 1 5 5 C 1.36070 * 108.47640 * 180.02562 * 4 3 2 6 6 C 1.47419 * 126.44451 * 179.97438 * 5 4 3 7 7 O 1.21616 * 120.00076 * 173.51194 * 6 5 4 8 8 N 1.34778 * 120.00249 * 353.51318 * 6 5 4 9 9 C 1.46499 * 120.00015 * 3.44086 * 8 6 5 10 10 C 1.46497 * 119.99851 * 183.43375 * 8 6 5 11 11 C 1.53003 * 109.46905 * 90.00499 * 10 8 6 12 12 C 1.53000 * 109.47171 * 179.97438 * 11 10 8 13 13 N 1.46501 * 109.46973 * 179.97438 * 12 11 10 14 14 C 1.36944 * 120.00174 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99388 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00128 * 180.02562 * 14 13 12 17 17 N 1.31614 * 119.99888 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99633 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46807 * 90.00313 * 18 16 14 20 20 H 1.48506 * 109.46607 * 210.00004 * 18 16 14 21 21 H 1.48491 * 109.47273 * 329.99865 * 18 16 14 22 22 C 1.36092 * 107.10514 * 0.02562 * 5 4 3 23 23 O 1.34052 * 125.37718 * 270.30625 * 3 2 1 24 24 H 1.09001 * 109.47255 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47500 * 300.00087 * 1 2 3 26 26 H 1.09004 * 109.47181 * 60.00604 * 1 2 3 27 27 H 1.08994 * 109.47390 * 239.99382 * 2 1 3 28 28 H 1.09001 * 109.46760 * 119.99136 * 2 1 3 29 29 H 1.09000 * 109.47141 * 84.08934 * 9 8 6 30 30 H 1.09000 * 109.46854 * 204.08957 * 9 8 6 31 31 H 1.09004 * 109.46903 * 324.08946 * 9 8 6 32 32 H 1.09005 * 109.47432 * 209.99993 * 10 8 6 33 33 H 1.09005 * 109.47501 * 330.00536 * 10 8 6 34 34 H 1.09002 * 109.47313 * 299.99652 * 11 10 8 35 35 H 1.08997 * 109.47254 * 59.99593 * 11 10 8 36 36 H 1.08999 * 109.46969 * 299.99554 * 12 11 10 37 37 H 1.08997 * 109.47301 * 59.99700 * 12 11 10 38 38 H 0.97000 * 120.00421 * 0.02562 * 13 12 11 39 39 H 0.96998 * 119.99937 * 180.02562 * 17 16 14 40 40 H 1.07995 * 126.52520 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2829 2.1302 1.0594 5 6 2.7164 3.3578 0.6637 6 6 3.1098 4.4732 1.5437 7 8 3.5925 5.4826 1.0672 8 7 2.9347 4.3743 2.8764 9 6 2.4238 3.1304 3.4577 10 6 3.2553 5.5106 3.7436 11 6 2.0170 6.3947 3.9044 12 6 2.3516 7.5812 4.8107 13 7 1.1660 8.4280 4.9642 14 6 1.2261 9.5566 5.7374 15 1 2.1477 9.8226 6.2338 16 6 0.1026 10.3587 5.8833 17 7 -1.0205 10.0342 5.2788 18 14 0.1850 11.8986 6.9375 19 1 0.5939 13.0525 6.0971 20 1 -1.1509 12.1656 7.5288 21 1 1.1771 11.7017 8.0247 22 6 2.7172 3.3625 -0.6972 23 8 2.2855 2.1545 -1.0930 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.2483 2.4328 3.6054 30 1 1.9527 3.3444 4.4171 31 1 1.6903 2.6885 2.7832 32 1 3.5697 5.1445 4.7210 33 1 4.0616 6.0925 3.2970 34 1 1.7025 6.7609 2.9271 35 1 1.2107 5.8129 4.3510 36 1 2.6657 7.2146 5.7880 37 1 3.1580 8.1631 4.3645 38 1 0.3382 8.1889 4.5187 39 1 -1.8055 10.5949 5.3804 40 1 3.0071 4.1829 -1.3369 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498538866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:04 Heat of formation + Delta-G solvation = -24.867563 kcal Electronic energy + Delta-G solvation = -21414.685531 eV Core-core repulsion = 18037.825551 eV Total energy + Delta-G solvation = -3376.859981 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.51364 -40.87048 -37.61145 -36.58901 -35.99078 -34.88813 -33.97233 -31.65632 -30.48650 -27.99147 -27.28669 -25.45663 -25.22464 -23.83469 -22.61494 -22.07237 -20.62310 -19.17627 -18.72629 -17.97394 -17.66138 -17.30988 -16.58548 -16.36428 -16.05487 -15.71160 -15.35862 -15.30577 -15.13193 -14.56312 -14.39692 -14.04965 -13.67604 -13.56321 -13.42848 -13.28850 -12.81865 -12.76926 -12.61703 -12.44774 -12.32255 -12.07891 -12.02263 -11.87128 -11.83051 -11.61509 -11.14823 -10.96397 -10.16764 -9.69610 -9.04751 -7.97566 -5.27989 0.01964 0.91686 1.45877 1.49043 1.54208 1.57492 1.85961 2.14198 2.54854 2.77737 3.35856 3.49794 3.74989 3.82956 3.98524 4.21408 4.22833 4.27490 4.35226 4.38898 4.50006 4.53600 4.56120 4.60722 4.69747 4.75272 4.86008 4.93161 5.00826 5.05951 5.19793 5.26613 5.29581 5.37272 5.46503 5.51761 6.18499 6.24346 6.44991 6.94861 7.29698 8.04371 8.28215 9.26475 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.002812 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.011928 B = 9956.322185 C =10189.002443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.025 4.025 3 C 0.200 3.800 4 N -0.471 5.471 5 C -0.096 4.096 6 C 0.589 3.411 7 O -0.573 6.573 8 N -0.598 5.598 9 C 0.076 3.924 10 C 0.126 3.874 11 C -0.121 4.121 12 C 0.156 3.844 13 N -0.750 5.750 14 C -0.249 4.249 15 H 0.079 0.921 16 C -0.079 4.079 17 N -0.972 5.972 18 Si 0.980 3.020 19 H -0.287 1.287 20 H -0.293 1.293 21 H -0.266 1.266 22 C 0.023 3.977 23 O -0.194 6.194 24 H 0.096 0.904 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.035 0.965 37 H 0.018 0.982 38 H 0.372 0.628 39 H 0.252 0.748 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.957 -26.306 -11.721 29.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.063 4.063 3 C -0.009 4.009 4 N -0.201 5.201 5 C -0.215 4.215 6 C 0.377 3.623 7 O -0.454 6.454 8 N -0.328 5.328 9 C -0.066 4.066 10 C 0.003 3.997 11 C -0.160 4.160 12 C 0.029 3.971 13 N -0.393 5.393 14 C -0.381 4.381 15 H 0.097 0.903 16 C -0.271 4.271 17 N -0.623 5.623 18 Si 0.808 3.192 19 H -0.214 1.214 20 H -0.219 1.219 21 H -0.191 1.191 22 C -0.051 4.051 23 O -0.080 6.080 24 H 0.115 0.885 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.036 0.964 38 H 0.203 0.797 39 H 0.061 0.939 40 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 7.238 -25.912 -11.192 29.139 hybrid contribution -0.424 1.521 -0.339 1.615 sum 6.814 -24.391 -11.532 27.827 Atomic orbital electron populations 1.21799 0.92568 1.04313 1.02131 1.20423 0.97033 0.81540 1.07292 1.27444 0.97725 0.97886 0.77813 1.70919 1.17010 1.02325 1.29864 1.21606 1.11724 0.94576 0.93556 1.17232 0.77911 0.84832 0.82326 1.90808 1.46886 1.32022 1.75646 1.47784 1.63495 1.15996 1.05504 1.22304 1.00634 0.83763 0.99886 1.21437 0.96461 0.86706 0.95092 1.21863 0.98857 0.96399 0.98909 1.20691 0.89257 0.90433 0.96715 1.42618 1.10495 1.27154 1.59005 1.19697 0.96700 1.00386 1.21308 0.90348 1.25678 0.95582 1.02972 1.02886 1.69836 1.01889 1.41152 1.49431 0.85048 0.76733 0.79056 0.78364 1.21397 1.21906 1.19075 1.25664 0.97034 0.87133 0.95254 1.84425 1.63161 1.22298 1.38152 0.88479 0.93088 0.92700 0.86307 0.85969 0.91471 0.90362 0.88419 0.87229 0.90662 0.94286 0.91634 0.94688 0.96426 0.79694 0.93908 0.73444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 71.98 0.71 -0.36 16 2 C -0.03 -0.18 6.56 29.85 0.20 0.02 16 3 C 0.20 3.27 7.56 88.39 0.67 3.93 16 4 N -0.47 -10.08 7.86 -293.03 -2.30 -12.39 16 5 C -0.10 -2.44 6.66 40.41 0.27 -2.17 16 6 C 0.59 18.40 7.67 86.66 0.66 19.06 16 7 O -0.57 -21.53 16.45 -4.08 -0.07 -21.60 16 8 N -0.60 -16.76 2.87 -850.65 -2.44 -19.21 16 9 C 0.08 1.63 9.61 127.77 1.23 2.86 16 10 C 0.13 3.67 5.41 86.38 0.47 4.14 16 11 C -0.12 -4.39 5.65 30.60 0.17 -4.21 16 12 C 0.16 6.67 6.26 86.38 0.54 7.21 16 13 N -0.75 -41.02 5.60 -343.45 -1.92 -42.95 16 14 C -0.25 -14.64 9.99 84.03 0.84 -13.80 16 15 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 16 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 17 N -0.97 -61.89 13.06 21.65 0.28 -61.61 16 18 Si 0.98 47.49 29.55 68.60 2.03 49.52 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 20 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 C 0.02 0.47 11.95 67.32 0.80 1.28 16 23 O -0.19 -3.43 10.73 0.35 0.00 -3.43 16 24 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 27 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.50 8.03 -2.39 -0.02 1.48 16 31 H 0.10 2.18 5.30 -2.38 -0.01 2.17 16 32 H 0.11 2.55 8.07 -2.38 -0.02 2.54 16 33 H 0.07 2.39 7.38 -2.38 -0.02 2.37 16 34 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.37 21.66 7.67 -92.71 -0.71 20.95 16 39 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.25 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -77.10 342.22 2.94 -74.16 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.33 Total: 23.82 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 7.03 Total: 13.68 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -6.39 Total: -136.15 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.06 Total: -25.03 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -77.10 2.94 -74.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498538866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.297 kcal (2) G-P(sol) polarization free energy of solvation -77.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds