Wall clock time and date at job start Tue Mar 31 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47303 * 2 1 4 4 O 1.45196 * 109.47482 * 120.00325 * 2 1 3 5 5 C 1.34234 * 116.99938 * 269.99807 * 4 2 1 6 6 O 1.20822 * 119.99973 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00068 * 179.97438 * 5 4 2 8 8 C 1.52992 * 109.47257 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47274 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.46977 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.46630 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99717 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99853 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47093 * 60.00328 * 15 13 11 17 17 H 1.48495 * 109.47002 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47349 * 300.00249 * 15 13 11 19 19 C 1.50707 * 109.47091 * 240.00178 * 2 1 3 20 20 N 1.30822 * 125.96190 * 285.02594 * 19 2 1 21 21 C 1.33242 * 109.83138 * 179.97438 * 20 19 2 22 22 N 1.30711 * 108.94283 * 359.97438 * 21 20 19 23 23 N 1.34430 * 125.95964 * 104.70858 * 19 2 1 24 24 C 1.46500 * 126.82389 * 0.02562 * 23 19 2 25 25 H 1.08994 * 109.47774 * 59.99812 * 1 2 3 26 26 H 1.09004 * 109.47303 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47001 * 299.99731 * 1 2 3 28 28 H 1.09004 * 109.46932 * 300.00373 * 7 5 4 29 29 H 1.08997 * 109.47392 * 59.99712 * 7 5 4 30 30 H 1.09004 * 109.47330 * 299.99977 * 8 7 5 31 31 H 1.09005 * 109.47124 * 59.99773 * 8 7 5 32 32 H 1.08999 * 109.46783 * 300.00124 * 9 8 7 33 33 H 1.09000 * 109.46608 * 60.00231 * 9 8 7 34 34 H 1.08988 * 109.47430 * 300.00270 * 10 9 8 35 35 H 1.08997 * 109.46441 * 60.00731 * 10 9 8 36 36 H 0.97000 * 119.99712 * 180.02562 * 14 13 11 37 37 H 1.07998 * 125.52669 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.46755 * 89.99392 * 24 23 19 39 39 H 1.08996 * 109.46876 * 209.99330 * 24 23 19 40 40 H 1.08998 * 109.46892 * 329.99806 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2172 0.0640 2.2811 6 8 1.9974 1.2516 2.2506 7 6 2.7184 -0.5773 3.5494 8 6 2.8626 0.4887 4.6373 9 6 3.3708 -0.1625 5.9253 10 6 3.5156 0.9037 7.0131 11 6 4.0156 0.2622 8.2817 12 1 4.2110 -0.7996 8.3092 13 6 4.2236 1.0309 9.4073 14 7 3.9852 2.3238 9.3739 15 14 4.8440 0.2358 10.9797 16 1 6.1642 -0.3956 10.7275 17 1 4.9833 1.2703 12.0359 18 1 3.8774 -0.7994 11.4258 19 6 2.0323 -0.7104 -1.2305 20 7 2.0295 -2.0040 -1.4258 21 6 2.5462 -2.2817 -2.6221 22 7 2.8858 -1.1634 -3.2076 23 7 2.5559 -0.1250 -2.3215 24 6 2.7468 1.3108 -2.5414 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.0089 -1.3370 3.8773 29 1 3.6872 -1.0410 3.3639 30 1 3.5719 1.2487 4.3097 31 1 1.8935 0.9520 4.8228 32 1 2.6612 -0.9223 6.2527 33 1 4.3398 -0.6260 5.7401 34 1 4.2253 1.6631 6.6853 35 1 2.5468 1.3675 7.1983 36 1 4.1319 2.8646 10.1657 37 1 2.6643 -3.2703 -3.0406 38 1 3.7313 1.6061 -2.1786 39 1 2.6719 1.5283 -3.6068 40 1 1.9793 1.8661 -2.0023 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525811116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:29 Heat of formation + Delta-G solvation = -16.504822 kcal Electronic energy + Delta-G solvation = -21123.852371 eV Core-core repulsion = 17747.355026 eV Total energy + Delta-G solvation = -3376.497345 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.55776 -40.65446 -37.11985 -35.01649 -34.60679 -33.29946 -32.64351 -30.51867 -29.81817 -27.76533 -26.12263 -24.67736 -22.89405 -22.35720 -20.90910 -20.29668 -20.05333 -17.86016 -17.57644 -16.65884 -16.46734 -16.20072 -16.08820 -15.16916 -14.82554 -14.49390 -14.27204 -13.90845 -13.65370 -13.49468 -13.33048 -12.71226 -12.67802 -12.37568 -12.18018 -11.84013 -11.68383 -11.64747 -11.09793 -11.00631 -10.63300 -10.60432 -10.48546 -10.46761 -10.37088 -10.14303 -9.99478 -9.66353 -9.30119 -9.04459 -8.32231 -5.97328 -3.99870 1.05329 1.70621 2.15185 2.41204 2.73396 3.34860 3.39212 3.41618 3.50894 4.03455 4.24175 4.42249 4.47878 4.52366 4.62343 4.71494 4.91739 4.94566 5.14439 5.24596 5.29106 5.32174 5.38252 5.65879 5.72336 5.83953 6.03081 6.03488 6.14956 6.21482 6.30243 6.44464 6.74514 6.92248 7.14618 7.64760 7.70733 7.71678 7.85571 8.03298 8.45173 9.07482 9.63981 11.13979 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.039303 B = 0.002423 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.246879 B =11555.479081 C =11742.737956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.169 3.831 3 H 0.105 0.895 4 O -0.337 6.337 5 C 0.462 3.538 6 O -0.504 6.504 7 C -0.110 4.110 8 C -0.108 4.108 9 C -0.110 4.110 10 C 0.021 3.979 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.275 3.725 20 N -0.514 5.514 21 C 0.199 3.801 22 N -0.315 5.315 23 N -0.373 5.373 24 C 0.088 3.912 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.261 0.739 37 H 0.222 0.778 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.681 -4.539 -25.284 26.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.111 3.889 3 H 0.123 0.877 4 O -0.253 6.253 5 C 0.306 3.694 6 O -0.390 6.390 7 C -0.148 4.148 8 C -0.146 4.146 9 C -0.148 4.148 10 C -0.016 4.016 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.002 4.002 20 N -0.241 5.241 21 C -0.104 4.104 22 N -0.143 5.143 23 N -0.165 5.165 24 C -0.054 4.054 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.238 0.762 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.528 -4.119 -25.710 26.618 hybrid contribution 0.391 -0.082 0.802 0.896 sum -5.138 -4.201 -24.907 25.776 Atomic orbital electron populations 1.22168 0.91381 1.04688 1.03826 1.20643 0.95362 0.94618 0.78260 0.87737 1.86730 1.77170 1.41951 1.19445 1.24410 0.73761 0.86156 0.85096 1.90663 1.47813 1.16692 1.83878 1.21645 1.03527 1.01059 0.88563 1.21593 1.02729 0.96467 0.93782 1.21657 0.99468 0.99829 0.93855 1.19087 0.97174 0.93462 0.91924 1.21240 1.44135 0.94522 0.96085 0.92726 1.25039 0.95704 0.94847 0.98944 1.69960 1.49103 1.05010 1.29452 0.86661 0.79401 0.78951 0.82992 1.20261 1.21330 1.20246 1.23782 0.96065 0.89623 0.90761 1.70513 1.23589 1.12059 1.17979 1.26096 0.96023 0.98575 0.89673 1.78090 1.24512 0.95577 1.16095 1.50303 1.45563 1.08138 1.12484 1.22093 1.03913 0.74219 1.05138 0.90643 0.90049 0.90055 0.87502 0.87716 0.91553 0.91436 0.93103 0.93180 0.96576 0.96539 0.92968 0.76208 0.89647 0.88354 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.53 37.15 0.35 -1.02 16 2 C 0.17 1.75 2.85 -27.88 -0.08 1.67 16 3 H 0.10 0.98 6.16 -51.93 -0.32 0.66 16 4 O -0.34 -4.22 9.86 -39.27 -0.39 -4.61 16 5 C 0.46 6.22 7.93 36.01 0.29 6.50 16 6 O -0.50 -7.81 15.20 -18.75 -0.28 -8.09 16 7 C -0.11 -1.43 5.81 -27.89 -0.16 -1.59 16 8 C -0.11 -1.80 4.50 -26.73 -0.12 -1.92 16 9 C -0.11 -2.19 5.15 -26.73 -0.14 -2.32 16 10 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 11 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 15 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.27 3.03 6.88 -155.70 -1.07 1.96 16 20 N -0.51 -6.27 11.19 -11.97 -0.13 -6.40 16 21 C 0.20 2.03 13.03 -91.81 -1.20 0.83 16 22 N -0.31 -3.45 12.70 29.29 0.37 -3.07 16 23 N -0.37 -3.65 4.04 -65.10 -0.26 -3.92 16 24 C 0.09 0.48 11.11 59.85 0.67 1.15 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 31 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.02 0.44 8.14 -51.94 -0.42 0.02 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.22 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.33 7.39 -51.93 -0.38 -0.05 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -35.06 346.89 -7.93 -42.99 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -6.16 Total: -4.41 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.01 Total: -7.96 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.71 Total: -39.85 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.67 Total: -12.70 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.06 -7.93 -42.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525811116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.481 kcal (2) G-P(sol) polarization free energy of solvation -35.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds