Wall clock time and date at job start Tue Mar 31 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47303 * 2 1 4 4 O 1.45196 * 109.47482 * 120.00325 * 2 1 3 5 5 C 1.34234 * 116.99938 * 269.99807 * 4 2 1 6 6 O 1.20822 * 119.99973 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00068 * 179.97438 * 5 4 2 8 8 C 1.52992 * 109.47257 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47274 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.46977 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.46630 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99717 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99853 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47093 * 60.00328 * 15 13 11 17 17 H 1.48495 * 109.47002 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47349 * 300.00249 * 15 13 11 19 19 C 1.50707 * 109.47091 * 240.00178 * 2 1 3 20 20 N 1.30822 * 125.96190 * 285.02594 * 19 2 1 21 21 C 1.33242 * 109.83138 * 179.97438 * 20 19 2 22 22 N 1.30711 * 108.94283 * 359.97438 * 21 20 19 23 23 N 1.34430 * 125.95964 * 104.70858 * 19 2 1 24 24 C 1.46500 * 126.82389 * 0.02562 * 23 19 2 25 25 H 1.08994 * 109.47774 * 59.99812 * 1 2 3 26 26 H 1.09004 * 109.47303 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47001 * 299.99731 * 1 2 3 28 28 H 1.09004 * 109.46932 * 300.00373 * 7 5 4 29 29 H 1.08997 * 109.47392 * 59.99712 * 7 5 4 30 30 H 1.09004 * 109.47330 * 299.99977 * 8 7 5 31 31 H 1.09005 * 109.47124 * 59.99773 * 8 7 5 32 32 H 1.08999 * 109.46783 * 300.00124 * 9 8 7 33 33 H 1.09000 * 109.46608 * 60.00231 * 9 8 7 34 34 H 1.08988 * 109.47430 * 300.00270 * 10 9 8 35 35 H 1.08997 * 109.46441 * 60.00731 * 10 9 8 36 36 H 0.97000 * 119.99712 * 180.02562 * 14 13 11 37 37 H 1.07998 * 125.52669 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.46755 * 89.99392 * 24 23 19 39 39 H 1.08996 * 109.46876 * 209.99330 * 24 23 19 40 40 H 1.08998 * 109.46892 * 329.99806 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2172 0.0640 2.2811 6 8 1.9974 1.2516 2.2506 7 6 2.7184 -0.5773 3.5494 8 6 2.8626 0.4887 4.6373 9 6 3.3708 -0.1625 5.9253 10 6 3.5156 0.9037 7.0131 11 6 4.0156 0.2622 8.2817 12 1 4.2110 -0.7996 8.3092 13 6 4.2236 1.0309 9.4073 14 7 3.9852 2.3238 9.3739 15 14 4.8440 0.2358 10.9797 16 1 6.1642 -0.3956 10.7275 17 1 4.9833 1.2703 12.0359 18 1 3.8774 -0.7994 11.4258 19 6 2.0323 -0.7104 -1.2305 20 7 2.0295 -2.0040 -1.4258 21 6 2.5462 -2.2817 -2.6221 22 7 2.8858 -1.1634 -3.2076 23 7 2.5559 -0.1250 -2.3215 24 6 2.7468 1.3108 -2.5414 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.0089 -1.3370 3.8773 29 1 3.6872 -1.0410 3.3639 30 1 3.5719 1.2487 4.3097 31 1 1.8935 0.9520 4.8228 32 1 2.6612 -0.9223 6.2527 33 1 4.3398 -0.6260 5.7401 34 1 4.2253 1.6631 6.6853 35 1 2.5468 1.3675 7.1983 36 1 4.1319 2.8646 10.1657 37 1 2.6643 -3.2703 -3.0406 38 1 3.7313 1.6061 -2.1786 39 1 2.6719 1.5283 -3.6068 40 1 1.9793 1.8661 -2.0023 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525811116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:28 Heat of formation + Delta-G solvation = -36.531964 kcal Electronic energy + Delta-G solvation = -21124.720813 eV Core-core repulsion = 17747.355026 eV Total energy + Delta-G solvation = -3377.365787 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.31129 -41.67447 -38.15254 -36.62044 -35.28168 -34.67096 -34.03088 -31.69218 -31.07572 -28.33110 -27.78383 -25.68164 -24.35948 -23.18179 -22.14230 -21.53635 -21.17554 -18.81663 -18.47105 -18.29738 -17.61865 -17.30824 -16.97813 -16.48464 -16.08430 -15.84967 -15.19591 -14.81056 -14.56858 -14.31736 -14.14310 -14.11294 -13.75591 -13.63647 -13.32945 -13.32665 -12.91811 -12.79875 -12.45964 -12.38348 -12.17711 -12.16615 -12.02042 -11.64841 -11.36132 -11.28599 -11.16934 -11.06216 -10.89090 -10.71446 -10.52274 -8.17355 -6.28674 0.28005 1.00264 1.12444 1.41978 1.45284 1.53033 1.61167 1.91729 2.43369 2.76890 3.15711 3.41110 3.52839 3.63632 3.80198 3.93406 3.99412 4.11116 4.25871 4.36703 4.45936 4.54779 4.61409 4.65167 4.65809 4.80972 4.88436 5.02096 5.10491 5.17176 5.24503 5.34046 5.34374 5.39755 5.58066 5.59301 5.80599 5.90494 6.27715 6.64222 6.89718 6.94393 7.40734 8.94498 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.039303 B = 0.002423 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.246879 B =11555.479081 C =11742.737956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 H 0.114 0.886 4 O -0.342 6.342 5 C 0.470 3.530 6 O -0.530 6.530 7 C -0.103 4.103 8 C -0.099 4.099 9 C -0.098 4.098 10 C 0.020 3.980 11 C -0.543 4.543 12 H 0.064 0.936 13 C -0.005 4.005 14 N -0.937 5.937 15 Si 0.966 3.034 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.265 1.265 19 C 0.266 3.734 20 N -0.544 5.544 21 C 0.195 3.805 22 N -0.335 5.335 23 N -0.372 5.372 24 C 0.077 3.923 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.060 0.940 34 H -0.013 1.013 35 H -0.012 1.012 36 H 0.263 0.737 37 H 0.251 0.749 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.558 -5.930 -25.803 27.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.131 0.869 4 O -0.257 6.257 5 C 0.314 3.686 6 O -0.418 6.418 7 C -0.141 4.141 8 C -0.136 4.136 9 C -0.135 4.135 10 C -0.018 4.018 11 C -0.581 4.581 12 H 0.083 0.917 13 C -0.202 4.202 14 N -0.577 5.577 15 Si 0.790 3.210 16 H -0.191 1.191 17 H -0.211 1.211 18 H -0.190 1.190 19 C -0.011 4.011 20 N -0.272 5.272 21 C -0.107 4.107 22 N -0.163 5.163 23 N -0.164 5.164 24 C -0.064 4.064 25 H 0.115 0.885 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.071 0.929 37 H 0.267 0.733 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.405 -5.516 -26.257 27.369 hybrid contribution 0.346 0.399 0.888 1.034 sum -5.059 -5.117 -25.368 26.369 Atomic orbital electron populations 1.22148 0.90047 1.04558 1.04729 1.20889 0.96390 0.94703 0.77197 0.86851 1.86691 1.77063 1.42127 1.19849 1.24340 0.73136 0.85670 0.85430 1.90659 1.49071 1.17750 1.84350 1.21513 1.05382 0.99946 0.87212 1.21356 1.01476 0.97100 0.93713 1.21451 1.00634 0.98160 0.93284 1.19041 0.94662 0.94438 0.93616 1.21739 1.43971 0.95179 0.97170 0.91730 1.26042 0.95846 0.95366 1.02966 1.70109 1.50298 1.06696 1.30605 0.85485 0.79262 0.78073 0.78139 1.19063 1.21099 1.19002 1.23835 0.96402 0.89710 0.91198 1.70483 1.24682 1.12930 1.19121 1.26728 0.95199 0.99701 0.89097 1.78040 1.25192 0.96132 1.16948 1.50555 1.44641 1.09275 1.11886 1.22466 1.05085 0.72256 1.06566 0.88487 0.90658 0.90361 0.85209 0.85711 0.92865 0.92599 0.91885 0.92095 0.99411 0.99311 0.92861 0.73308 0.88976 0.86969 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.53 71.98 0.69 -1.75 16 2 C 0.17 3.20 2.85 29.85 0.09 3.29 16 3 H 0.11 1.97 6.16 -2.39 -0.01 1.95 16 4 O -0.34 -8.08 9.86 -51.46 -0.51 -8.58 16 5 C 0.47 12.00 7.93 71.24 0.56 12.57 16 6 O -0.53 -16.05 15.20 21.98 0.33 -15.72 16 7 C -0.10 -2.46 5.81 29.85 0.17 -2.29 16 8 C -0.10 -3.23 4.50 30.59 0.14 -3.09 16 9 C -0.10 -3.80 5.15 30.60 0.16 -3.64 16 10 C 0.02 1.03 4.97 29.85 0.15 1.18 16 11 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 12 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 13 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 14 N -0.94 -57.94 13.29 21.45 0.28 -57.65 16 15 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 C 0.27 5.55 6.88 138.23 0.95 6.50 16 20 N -0.54 -12.71 11.19 -191.78 -2.15 -14.85 16 21 C 0.19 3.75 13.03 180.77 2.36 6.10 16 22 N -0.33 -6.95 12.70 -61.25 -0.78 -7.73 16 23 N -0.37 -6.79 4.04 -359.87 -1.45 -8.24 16 24 C 0.08 0.71 11.11 127.77 1.42 2.13 16 25 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.13 2.55 8.14 -2.38 -0.02 2.53 16 29 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.05 1.87 8.10 -2.38 -0.02 1.85 16 31 H 0.06 1.94 8.10 -2.38 -0.02 1.92 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 34 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 35 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.25 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.11 0.56 7.39 -2.39 -0.02 0.55 16 Total: -1.00 -76.15 346.89 6.16 -69.99 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 1.02 Total: 5.93 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 7.37 Total: -9.50 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -4.09 Total: -88.47 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.17 Total: -24.30 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -76.15 6.16 -69.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525811116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.462 kcal (2) G-P(sol) polarization free energy of solvation -76.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds