Wall clock time and date at job start Tue Mar 31 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47192 * 2 1 4 4 C 1.52999 * 109.47273 * 175.30862 * 3 2 1 5 5 H 1.08998 * 109.47399 * 305.02808 * 4 3 2 6 6 O 1.42900 * 109.46918 * 65.02357 * 4 3 2 7 7 C 1.42893 * 114.00448 * 258.64045 * 6 4 3 8 8 C 1.50699 * 109.47206 * 185.02746 * 4 3 2 9 9 O 1.21297 * 119.99900 * 245.00210 * 8 4 3 10 10 N 1.34773 * 120.00225 * 65.00039 * 8 4 3 11 11 C 1.40154 * 120.00119 * 180.02562 * 10 8 4 12 12 C 1.40411 * 125.97541 * 359.97438 * 11 10 8 13 13 C 1.35232 * 107.86726 * 179.74149 * 12 11 10 14 14 N 1.34966 * 107.86320 * 0.38938 * 13 12 11 15 15 C 1.46501 * 125.97464 * 179.87221 * 14 13 12 16 16 C 1.50704 * 109.47027 * 124.71763 * 15 14 13 17 17 H 1.08002 * 119.99920 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00099 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99757 * 359.72436 * 18 16 15 20 20 Si 1.86798 * 120.00021 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47058 * 179.72198 * 20 18 16 22 22 H 1.48497 * 109.47117 * 299.72923 * 20 18 16 23 23 H 1.48501 * 109.46770 * 59.72392 * 20 18 16 24 24 N 1.31219 * 125.97285 * 179.97438 * 11 10 8 25 25 H 1.08999 * 109.46536 * 299.99821 * 1 2 3 26 26 H 1.08990 * 109.47306 * 59.99569 * 1 2 3 27 27 H 1.08998 * 109.46742 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46979 * 240.00250 * 2 1 3 29 29 H 1.09001 * 109.47762 * 120.00496 * 2 1 3 30 30 H 1.08998 * 109.46967 * 55.31038 * 3 2 1 31 31 H 1.08997 * 109.47003 * 295.31427 * 3 2 1 32 32 H 1.08997 * 109.47788 * 305.53329 * 7 6 4 33 33 H 1.09010 * 109.46940 * 65.52815 * 7 6 4 34 34 H 1.08999 * 109.47670 * 185.52704 * 7 6 4 35 35 H 0.96998 * 119.99949 * 359.97438 * 10 8 4 36 36 H 1.08000 * 126.06481 * 0.02562 * 12 11 10 37 37 H 1.07999 * 126.06761 * 180.26768 * 13 12 11 38 38 H 1.09000 * 109.47430 * 4.71987 * 15 14 13 39 39 H 1.09001 * 109.47122 * 244.71337 * 15 14 13 40 40 H 0.97001 * 119.99961 * 0.27281 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5655 1.4442 0.1180 5 1 3.8623 0.8779 1.0008 6 8 4.1339 0.8427 -1.0470 7 6 4.5580 -0.5084 -0.8556 8 6 4.0582 2.8629 0.2422 9 8 4.7478 3.3441 -0.6319 10 7 3.7326 3.5970 1.3245 11 6 4.1904 4.9167 1.4398 12 6 4.9916 5.5961 0.5081 13 6 5.2100 6.8442 0.9808 14 7 4.5808 6.9525 2.1699 15 6 4.5611 8.1396 3.0282 16 6 3.1336 8.5280 3.3157 17 1 2.3223 7.9482 2.9010 18 6 2.8634 9.6234 4.1082 19 7 3.8515 10.3262 4.6176 20 14 1.0941 10.1052 4.4641 21 1 1.0741 11.3048 5.3391 22 1 0.3982 10.4111 3.1884 23 1 0.4033 8.9823 5.1476 24 7 3.9453 5.7332 2.4373 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8935 -0.5139 0.8899 30 1 1.6097 1.9800 0.8450 31 1 1.7469 1.9315 -0.9290 32 1 5.2420 -0.5580 -0.0083 33 1 3.6897 -1.1373 -0.6588 34 1 5.0657 -0.8606 -1.7535 35 1 3.1808 3.2123 2.0234 36 1 5.3632 5.1948 -0.4231 37 1 5.7872 7.6164 0.4942 38 1 5.0665 8.9622 2.5222 39 1 5.0734 7.9194 3.9647 40 1 4.7703 10.0762 4.4325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001538738703.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:14 Heat of formation + Delta-G solvation = -33.224788 kcal Electronic energy + Delta-G solvation = -21665.240655 eV Core-core repulsion = 18288.018278 eV Total energy + Delta-G solvation = -3377.222377 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.36219 -41.02534 -38.86719 -36.46941 -35.75901 -35.26719 -32.86506 -31.15231 -30.88208 -28.22152 -27.49147 -25.91578 -24.83409 -22.91822 -22.18743 -22.02591 -20.98293 -19.25608 -18.59356 -18.29951 -17.66223 -17.08557 -16.48230 -16.29025 -15.98814 -15.73108 -15.56724 -15.42904 -15.00189 -14.37496 -14.25400 -14.07471 -13.94235 -13.75433 -13.38942 -13.22850 -13.03033 -12.61881 -12.48969 -12.27568 -12.05141 -11.97580 -11.95354 -11.67456 -11.51136 -11.07957 -11.01743 -10.70066 -10.44434 -9.87665 -9.25052 -8.78782 -6.56861 0.81588 1.15121 1.33369 1.51451 1.57719 1.79352 2.08314 2.12785 2.48703 2.90606 3.00678 3.38801 3.74312 3.81080 3.88790 4.10822 4.16958 4.23399 4.48900 4.54077 4.54949 4.63526 4.68314 4.73488 4.76747 4.79674 4.85059 4.93832 5.01025 5.05010 5.23959 5.31687 5.45021 5.53830 5.78252 5.90103 5.98014 6.22545 6.25318 6.40064 6.88449 7.01762 7.19026 8.57738 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022119 B = 0.003493 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.600951 B = 8014.922724 C = 9055.852133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.133 4.133 4 C 0.091 3.909 5 H 0.126 0.874 6 O -0.385 6.385 7 C 0.016 3.984 8 C 0.512 3.488 9 O -0.537 6.537 10 N -0.619 5.619 11 C 0.267 3.733 12 C -0.294 4.294 13 C 0.057 3.943 14 N -0.342 5.342 15 C 0.259 3.741 16 C -0.623 4.623 17 H 0.046 0.954 18 C -0.018 4.018 19 N -0.923 5.923 20 Si 1.120 2.880 21 H -0.275 1.275 22 H -0.272 1.272 23 H -0.274 1.274 24 N -0.341 5.341 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.426 0.574 36 H 0.166 0.834 37 H 0.202 0.798 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -22.873 -8.359 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.171 4.171 4 C 0.029 3.971 5 H 0.144 0.856 6 O -0.303 6.303 7 C -0.079 4.079 8 C 0.299 3.701 9 O -0.411 6.411 10 N -0.271 5.271 11 C 0.012 3.988 12 C -0.325 4.325 13 C -0.092 4.092 14 N -0.124 5.124 15 C 0.140 3.860 16 C -0.661 4.661 17 H 0.064 0.936 18 C -0.218 4.218 19 N -0.559 5.559 20 Si 0.941 3.059 21 H -0.200 1.200 22 H -0.197 1.197 23 H -0.199 1.199 24 N -0.172 5.172 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.264 0.736 36 H 0.183 0.817 37 H 0.219 0.781 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.829 -21.144 -7.198 22.662 hybrid contribution 1.478 -1.094 -0.997 2.091 sum -2.351 -22.238 -8.195 23.817 Atomic orbital electron populations 1.21780 0.95183 1.02359 1.01869 1.21576 0.96476 0.94368 1.03201 1.22104 0.91169 1.00161 1.03707 1.21995 0.94840 0.88325 0.91901 0.85610 1.88008 1.80623 1.28839 1.32826 1.23263 1.00060 0.81164 1.03431 1.21600 0.79465 0.89059 0.80008 1.90631 1.37668 1.72463 1.40369 1.42550 1.52283 1.08302 1.23940 1.19454 0.97716 0.87136 0.94447 1.21724 1.11501 0.94369 1.04883 1.23165 0.98732 0.99530 0.87732 1.48590 1.37280 1.09926 1.16631 1.19437 0.98602 0.79069 0.88889 1.22297 0.91832 1.15874 1.36074 0.93561 1.27292 1.09699 0.92622 0.92199 1.70947 1.00405 1.40893 1.43686 0.82880 0.69160 0.76621 0.77278 1.20008 1.19680 1.19900 1.77267 1.23487 0.92845 1.23564 0.92436 0.93353 0.91523 0.91197 0.89950 0.89287 0.91940 0.92776 0.91234 0.88585 0.73563 0.81705 0.78137 0.92855 0.96438 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.12 -1.28 4.94 30.60 0.15 -1.13 16 3 C -0.13 -2.09 4.89 30.60 0.15 -1.94 16 4 C 0.09 1.70 2.68 29.85 0.08 1.78 16 5 H 0.13 1.48 7.60 -2.39 -0.02 1.46 16 6 O -0.38 -8.30 9.65 -129.99 -1.25 -9.55 16 7 C 0.02 0.20 10.47 113.37 1.19 1.39 16 8 C 0.51 14.69 7.15 87.66 0.63 15.31 16 9 O -0.54 -20.00 13.64 15.91 0.22 -19.79 16 10 N -0.62 -18.48 5.35 -307.51 -1.64 -20.12 16 11 C 0.27 10.77 8.11 133.33 1.08 11.85 16 12 C -0.29 -11.82 9.61 22.11 0.21 -11.61 16 13 C 0.06 2.28 11.43 83.52 0.95 3.23 16 14 N -0.34 -16.25 3.67 -351.84 -1.29 -17.54 16 15 C 0.26 13.40 5.57 85.63 0.48 13.88 16 16 C -0.62 -35.49 9.24 25.60 0.24 -35.26 16 17 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 18 C -0.02 -1.03 5.46 84.66 0.46 -0.57 16 19 N -0.92 -54.01 13.65 21.45 0.29 -53.72 16 20 Si 1.12 49.50 29.90 68.60 2.05 51.55 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 N -0.34 -15.93 12.42 -54.45 -0.68 -16.61 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.77 6.53 -2.38 -0.02 0.75 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 1.24 7.77 -2.39 -0.02 1.22 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 0.56 8.00 -2.39 -0.02 0.54 16 33 H 0.07 0.55 6.03 -2.38 -0.01 0.53 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.43 9.75 8.53 -92.71 -0.79 8.96 16 36 H 0.17 6.53 5.92 -2.91 -0.02 6.51 16 37 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 38 H 0.05 2.65 7.94 -2.39 -0.02 2.63 16 39 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16 40 H 0.26 15.09 7.22 -92.71 -0.67 14.42 16 Total: -1.00 -75.14 337.31 4.38 -70.76 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.36 Total: 19.07 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 6.33 Total: -4.04 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -3.32 Total: -108.00 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -1.04 Total: -29.34 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.05 Total: 51.55 kcal Total: -75.14 4.38 -70.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538738703.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.535 kcal (2) G-P(sol) polarization free energy of solvation -75.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds