Wall clock time and date at job start Tue Mar 31 2020 05:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47515 * 2 1 4 4 H 1.08999 * 109.47283 * 184.35682 * 3 2 1 5 5 C 1.50692 * 109.47375 * 304.36594 * 3 2 1 6 6 O 1.21290 * 120.00388 * 123.53545 * 5 3 2 7 7 N 1.34783 * 119.99803 * 303.53549 * 5 3 2 8 8 C 1.40157 * 119.99778 * 174.35984 * 7 5 3 9 9 C 1.40416 * 125.97534 * 0.02562 * 8 7 5 10 10 C 1.35239 * 107.86511 * 179.75947 * 9 8 7 11 11 N 1.34971 * 107.86199 * 0.39402 * 10 9 8 12 12 C 1.46491 * 125.97196 * 179.87523 * 11 10 9 13 13 C 1.50704 * 109.47445 * 124.71037 * 12 11 10 14 14 H 1.08002 * 119.99867 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00513 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99915 * 359.73418 * 15 13 12 17 17 Si 1.86804 * 120.00364 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47128 * 179.72918 * 17 15 13 19 19 H 1.48502 * 109.46912 * 299.73252 * 17 15 13 20 20 H 1.48497 * 109.46793 * 59.72842 * 17 15 13 21 21 N 1.31216 * 125.97143 * 180.02562 * 8 7 5 22 22 C 1.53008 * 109.46635 * 64.36361 * 3 2 1 23 23 H 1.08995 * 109.47163 * 299.99890 * 22 3 2 24 24 C 1.52999 * 109.46824 * 59.99949 * 22 3 2 25 25 O 1.42896 * 109.46966 * 179.97438 * 22 3 2 26 26 H 1.08999 * 109.47252 * 295.02279 * 1 2 3 27 27 H 1.09007 * 109.47262 * 55.01597 * 1 2 3 28 28 H 1.09000 * 109.47505 * 175.01762 * 1 2 3 29 29 H 1.09003 * 109.46791 * 240.00082 * 2 1 3 30 30 H 1.09000 * 109.47072 * 120.00952 * 2 1 3 31 31 H 0.96998 * 119.99790 * 354.35819 * 7 5 3 32 32 H 1.07995 * 126.06375 * 0.02562 * 9 8 7 33 33 H 1.07997 * 126.06464 * 180.23735 * 10 9 8 34 34 H 1.09003 * 109.47829 * 4.70801 * 12 11 10 35 35 H 1.09003 * 109.47384 * 244.70879 * 12 11 10 36 36 H 0.96998 * 119.99821 * 0.26089 * 16 15 13 37 37 H 1.08999 * 109.47703 * 60.00306 * 24 22 3 38 38 H 1.09003 * 109.46668 * 179.97438 * 24 22 3 39 39 H 1.09004 * 109.47290 * 299.99514 * 24 22 3 40 40 H 0.96703 * 114.00364 * 300.00072 * 25 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1272 1.4434 -0.0781 5 6 1.4515 2.1835 -1.1727 6 8 0.8185 3.2020 -0.9908 7 7 1.6283 1.7143 -2.4238 8 6 0.9838 2.3350 -3.5026 9 6 0.1310 3.4478 -3.4245 10 6 -0.2807 3.7438 -4.6783 11 7 0.2800 2.8500 -5.5200 12 6 0.0975 2.8042 -6.9727 13 6 1.4430 2.8515 -7.6499 14 1 2.3440 2.9094 -7.0572 15 6 1.5239 2.8198 -9.0258 16 7 0.4271 2.7430 -9.7474 17 14 3.1917 2.8792 -9.8652 18 1 3.0071 2.8254 -11.3375 19 1 3.8855 4.1400 -9.4989 20 1 4.0083 1.7192 -9.4260 21 7 1.0718 1.9777 -4.7621 22 6 1.6216 2.1313 1.3006 23 1 0.5344 2.1303 1.3788 24 6 2.2192 1.3789 2.4912 25 8 2.0985 3.4783 1.3009 26 1 -0.3634 0.4347 0.9312 27 1 -0.3634 0.5892 -0.8420 28 1 -0.3634 -1.0238 -0.0892 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 2.2017 0.9472 -2.5776 32 1 -0.1436 3.9763 -2.5237 33 1 -0.9428 4.5504 -4.9562 34 1 -0.4997 3.6587 -7.2912 35 1 -0.4143 1.8814 -7.2458 36 1 -0.4390 2.7124 -9.3116 37 1 3.3064 1.3798 2.4132 38 1 1.9215 1.8699 3.4178 39 1 1.8558 0.3512 2.4912 40 1 3.0601 3.5552 1.2339 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001558939341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:55 Heat of formation + Delta-G solvation = -18.901094 kcal Electronic energy + Delta-G solvation = -22122.902650 eV Core-core repulsion = 18746.301395 eV Total energy + Delta-G solvation = -3376.601255 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89724 -39.88005 -37.52235 -35.04352 -34.61480 -33.57202 -30.89343 -30.34225 -29.36065 -28.02521 -26.14179 -23.65619 -23.33251 -22.28878 -20.80894 -20.11105 -19.26483 -17.44789 -17.18414 -16.69527 -16.42873 -15.94631 -15.35017 -15.13030 -14.39013 -14.16391 -13.91122 -13.79137 -13.53491 -13.39136 -13.10329 -12.62424 -12.43108 -12.30112 -12.21493 -12.16908 -11.81841 -11.44986 -11.29604 -11.16091 -10.82409 -10.77663 -10.40007 -10.21994 -10.16534 -9.98353 -9.45747 -8.99790 -8.58504 -8.18451 -7.50013 -6.58471 -4.32485 2.33727 2.74460 2.87438 3.37426 3.38981 3.57935 3.67654 3.76412 4.14961 4.23951 4.40280 4.47011 4.68657 4.79732 4.89471 4.98223 5.01330 5.15428 5.29735 5.35112 5.40227 5.50511 5.62539 5.71606 5.75758 5.80626 5.88140 6.04816 6.23700 6.43131 6.53120 6.62068 6.75210 7.38188 7.50078 7.52151 7.72001 7.84168 8.29403 8.34193 8.55387 8.62754 9.35794 10.79074 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030631 B = 0.003410 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.889924 B = 8208.630301 C = 8323.376017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.118 4.118 3 C -0.139 4.139 4 H 0.101 0.899 5 C 0.524 3.476 6 O -0.497 6.497 7 N -0.634 5.634 8 C 0.261 3.739 9 C -0.285 4.285 10 C 0.050 3.950 11 N -0.318 5.318 12 C 0.250 3.750 13 C -0.608 4.608 14 H 0.063 0.937 15 C 0.023 3.977 16 N -0.905 5.905 17 Si 1.077 2.923 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.285 1.285 21 N -0.304 5.304 22 C 0.122 3.878 23 H 0.106 0.894 24 C -0.188 4.188 25 O -0.544 6.544 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.408 0.592 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.267 0.733 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 -5.000 21.938 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.156 4.156 3 C -0.161 4.161 4 H 0.119 0.881 5 C 0.309 3.691 6 O -0.368 6.368 7 N -0.283 5.283 8 C 0.007 3.993 9 C -0.317 4.317 10 C -0.100 4.100 11 N -0.100 5.100 12 C 0.131 3.869 13 C -0.646 4.646 14 H 0.081 0.919 15 C -0.182 4.182 16 N -0.540 5.540 17 Si 0.904 3.096 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.211 1.211 21 N -0.135 5.135 22 C 0.063 3.937 23 H 0.124 0.876 24 C -0.245 4.245 25 O -0.348 6.348 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.243 0.757 32 H 0.178 0.822 33 H 0.184 0.816 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.039 -4.963 19.697 20.538 hybrid contribution -0.180 -0.057 1.774 1.784 sum 2.860 -5.020 21.471 22.235 Atomic orbital electron populations 1.21902 0.94994 1.02363 1.02613 1.21589 0.97081 0.93480 1.03426 1.22226 1.02169 0.96887 0.94798 0.88082 1.20367 0.80869 0.85124 0.82768 1.90696 1.38794 1.22927 1.84394 1.42558 1.48136 1.33312 1.04256 1.19139 0.97271 0.95433 0.87434 1.21528 1.08789 1.03131 0.98209 1.22559 1.00536 0.96634 0.90232 1.48768 1.32562 1.20503 1.08160 1.19746 0.99407 0.97967 0.69742 1.22107 0.91916 1.56485 0.94098 0.91866 1.25928 1.05160 0.93148 0.93957 1.70852 0.98498 1.45830 1.38863 0.83417 0.73343 0.76822 0.76031 1.20512 1.21228 1.21150 1.77341 1.18050 1.17887 1.00212 1.21701 1.00127 0.81657 0.90250 0.87639 1.22606 1.01446 1.01415 0.99069 1.86761 1.26261 1.25386 1.96349 0.92211 0.92142 0.92066 0.90960 0.90118 0.75679 0.82203 0.81565 0.93654 0.94822 0.92274 0.92200 0.91440 0.91080 0.78658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.32 37.15 0.35 -1.08 16 2 C -0.12 -0.86 5.31 -26.73 -0.14 -1.00 16 3 C -0.14 -1.23 2.29 -91.77 -0.21 -1.44 16 4 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 5 C 0.52 7.30 5.47 -10.99 -0.06 7.24 16 6 O -0.50 -8.73 12.39 -13.51 -0.17 -8.90 16 7 N -0.63 -9.70 5.29 -11.13 -0.06 -9.76 16 8 C 0.26 5.28 8.10 -154.39 -1.25 4.03 16 9 C -0.29 -5.78 9.61 -39.83 -0.38 -6.16 16 10 C 0.05 1.02 11.43 -17.24 -0.20 0.83 16 11 N -0.32 -7.54 3.67 -62.56 -0.23 -7.77 16 12 C 0.25 6.39 5.57 -5.20 -0.03 6.36 16 13 C -0.61 -17.25 9.24 -34.44 -0.32 -17.57 16 14 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 15 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 16 N -0.90 -26.49 13.65 55.43 0.76 -25.73 16 17 Si 1.08 25.01 29.90 -169.99 -5.08 19.93 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 N -0.30 -7.10 12.42 31.44 0.39 -6.71 16 22 C 0.12 1.11 2.47 -26.73 -0.07 1.05 16 23 H 0.11 1.12 6.65 -51.93 -0.35 0.77 16 24 C -0.19 -1.13 9.19 37.16 0.34 -0.79 16 25 O -0.54 -6.13 12.15 -54.29 -0.66 -6.78 16 26 H 0.06 0.48 6.80 -51.93 -0.35 0.13 16 27 H 0.06 0.71 6.90 -51.92 -0.36 0.36 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.50 7.63 -51.93 -0.40 0.10 16 30 H 0.08 0.42 6.21 -51.93 -0.32 0.09 16 31 H 0.41 5.14 8.28 -40.82 -0.34 4.80 16 32 H 0.16 3.17 5.94 -52.49 -0.31 2.86 16 33 H 0.17 2.79 8.06 -52.49 -0.42 2.37 16 34 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 35 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 36 H 0.27 7.64 7.22 -40.82 -0.29 7.35 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.35 6.33 -51.93 -0.33 0.02 16 40 H 0.37 2.73 9.05 45.56 0.41 3.14 16 LS Contribution 329.64 15.07 4.97 4.97 Total: -1.00 -35.00 329.64 -6.93 -41.93 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.78 Total: 6.84 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.07 Total: -8.00 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.86 Total: -49.97 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.83 Total: -15.69 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.00 -6.93 -41.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558939341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.028 kcal (2) G-P(sol) polarization free energy of solvation -34.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds