Wall clock time and date at job start Tue Mar 31 2020 05:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47515 * 2 1 4 4 H 1.08999 * 109.47283 * 184.35682 * 3 2 1 5 5 C 1.50692 * 109.47375 * 304.36594 * 3 2 1 6 6 O 1.21290 * 120.00388 * 123.53545 * 5 3 2 7 7 N 1.34783 * 119.99803 * 303.53549 * 5 3 2 8 8 C 1.40157 * 119.99778 * 174.35984 * 7 5 3 9 9 C 1.40416 * 125.97534 * 0.02562 * 8 7 5 10 10 C 1.35239 * 107.86511 * 179.75947 * 9 8 7 11 11 N 1.34971 * 107.86199 * 0.39402 * 10 9 8 12 12 C 1.46491 * 125.97196 * 179.87523 * 11 10 9 13 13 C 1.50704 * 109.47445 * 124.71037 * 12 11 10 14 14 H 1.08002 * 119.99867 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00513 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99915 * 359.73418 * 15 13 12 17 17 Si 1.86804 * 120.00364 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47128 * 179.72918 * 17 15 13 19 19 H 1.48502 * 109.46912 * 299.73252 * 17 15 13 20 20 H 1.48497 * 109.46793 * 59.72842 * 17 15 13 21 21 N 1.31216 * 125.97143 * 180.02562 * 8 7 5 22 22 C 1.53008 * 109.46635 * 64.36361 * 3 2 1 23 23 H 1.08995 * 109.47163 * 299.99890 * 22 3 2 24 24 C 1.52999 * 109.46824 * 59.99949 * 22 3 2 25 25 O 1.42896 * 109.46966 * 179.97438 * 22 3 2 26 26 H 1.08999 * 109.47252 * 295.02279 * 1 2 3 27 27 H 1.09007 * 109.47262 * 55.01597 * 1 2 3 28 28 H 1.09000 * 109.47505 * 175.01762 * 1 2 3 29 29 H 1.09003 * 109.46791 * 240.00082 * 2 1 3 30 30 H 1.09000 * 109.47072 * 120.00952 * 2 1 3 31 31 H 0.96998 * 119.99790 * 354.35819 * 7 5 3 32 32 H 1.07995 * 126.06375 * 0.02562 * 9 8 7 33 33 H 1.07997 * 126.06464 * 180.23735 * 10 9 8 34 34 H 1.09003 * 109.47829 * 4.70801 * 12 11 10 35 35 H 1.09003 * 109.47384 * 244.70879 * 12 11 10 36 36 H 0.96998 * 119.99821 * 0.26089 * 16 15 13 37 37 H 1.08999 * 109.47703 * 60.00306 * 24 22 3 38 38 H 1.09003 * 109.46668 * 179.97438 * 24 22 3 39 39 H 1.09004 * 109.47290 * 299.99514 * 24 22 3 40 40 H 0.96703 * 114.00364 * 300.00072 * 25 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1272 1.4434 -0.0781 5 6 1.4515 2.1835 -1.1727 6 8 0.8185 3.2020 -0.9908 7 7 1.6283 1.7143 -2.4238 8 6 0.9838 2.3350 -3.5026 9 6 0.1310 3.4478 -3.4245 10 6 -0.2807 3.7438 -4.6783 11 7 0.2800 2.8500 -5.5200 12 6 0.0975 2.8042 -6.9727 13 6 1.4430 2.8515 -7.6499 14 1 2.3440 2.9094 -7.0572 15 6 1.5239 2.8198 -9.0258 16 7 0.4271 2.7430 -9.7474 17 14 3.1917 2.8792 -9.8652 18 1 3.0071 2.8254 -11.3375 19 1 3.8855 4.1400 -9.4989 20 1 4.0083 1.7192 -9.4260 21 7 1.0718 1.9777 -4.7621 22 6 1.6216 2.1313 1.3006 23 1 0.5344 2.1303 1.3788 24 6 2.2192 1.3789 2.4912 25 8 2.0985 3.4783 1.3009 26 1 -0.3634 0.4347 0.9312 27 1 -0.3634 0.5892 -0.8420 28 1 -0.3634 -1.0238 -0.0892 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 2.2017 0.9472 -2.5776 32 1 -0.1436 3.9763 -2.5237 33 1 -0.9428 4.5504 -4.9562 34 1 -0.4997 3.6587 -7.2912 35 1 -0.4143 1.8814 -7.2458 36 1 -0.4390 2.7124 -9.3116 37 1 3.3064 1.3798 2.4132 38 1 1.9215 1.8699 3.4178 39 1 1.8558 0.3512 2.4912 40 1 3.0601 3.5552 1.2339 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001558939341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:55 Heat of formation + Delta-G solvation = -43.823685 kcal Electronic energy + Delta-G solvation = -22123.983375 eV Core-core repulsion = 18746.301395 eV Total energy + Delta-G solvation = -3377.681980 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.35600 -41.12337 -38.44754 -36.38966 -35.84937 -35.22758 -32.66101 -31.06810 -30.94029 -29.00060 -27.89091 -25.20055 -24.31137 -23.57644 -22.31160 -21.42585 -20.41319 -19.25867 -18.58590 -17.90241 -17.50533 -17.05454 -16.72064 -16.20595 -15.85152 -15.59586 -15.27064 -15.06019 -14.88220 -14.36826 -14.13755 -14.05104 -13.88445 -13.72059 -13.28142 -13.20861 -12.94501 -12.72478 -12.61945 -12.15910 -11.96193 -11.95958 -11.94008 -11.65835 -11.43876 -11.01311 -10.96720 -10.71297 -10.62786 -9.84637 -9.20923 -8.79246 -6.57881 0.88848 1.31708 1.41641 1.50528 1.56875 1.78742 2.18822 2.29251 2.48315 2.99587 3.39595 3.51626 3.65643 3.86139 4.02688 4.10200 4.15419 4.28401 4.35805 4.43623 4.54332 4.72391 4.73981 4.75810 4.78068 4.81442 4.94509 5.01085 5.10462 5.13317 5.24784 5.27925 5.44740 5.53637 5.82440 5.92242 6.22001 6.25732 6.39701 6.94146 6.95243 7.14548 7.18279 8.56555 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030631 B = 0.003410 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.889924 B = 8208.630301 C = 8323.376017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.114 4.114 3 C -0.126 4.126 4 H 0.134 0.866 5 C 0.522 3.478 6 O -0.535 6.535 7 N -0.628 5.628 8 C 0.270 3.730 9 C -0.293 4.293 10 C 0.054 3.946 11 N -0.344 5.344 12 C 0.260 3.740 13 C -0.623 4.623 14 H 0.045 0.955 15 C -0.019 4.019 16 N -0.923 5.923 17 Si 1.121 2.879 18 H -0.275 1.275 19 H -0.271 1.271 20 H -0.274 1.274 21 N -0.346 5.346 22 C 0.120 3.880 23 H 0.083 0.917 24 C -0.178 4.178 25 O -0.573 6.573 26 H 0.064 0.936 27 H 0.023 0.977 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.421 0.579 32 H 0.165 0.835 33 H 0.199 0.801 34 H 0.052 0.948 35 H 0.017 0.983 36 H 0.261 0.739 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.654 -5.835 23.628 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.151 4.151 3 C -0.148 4.148 4 H 0.151 0.849 5 C 0.310 3.690 6 O -0.408 6.408 7 N -0.278 5.278 8 C 0.015 3.985 9 C -0.324 4.324 10 C -0.094 4.094 11 N -0.126 5.126 12 C 0.140 3.860 13 C -0.660 4.660 14 H 0.063 0.937 15 C -0.218 4.218 16 N -0.559 5.559 17 Si 0.941 3.059 18 H -0.199 1.199 19 H -0.197 1.197 20 H -0.199 1.199 21 N -0.177 5.177 22 C 0.061 3.939 23 H 0.101 0.899 24 C -0.235 4.235 25 O -0.380 6.380 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.259 0.741 32 H 0.182 0.818 33 H 0.216 0.784 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.758 -5.816 21.432 22.711 hybrid contribution -0.776 0.222 1.407 1.622 sum 3.982 -5.594 22.839 23.849 Atomic orbital electron populations 1.21916 0.96537 1.02328 1.01254 1.21657 0.95614 0.92396 1.05471 1.22309 1.03622 0.97005 0.91816 0.84857 1.21459 0.79736 0.84698 0.83098 1.90670 1.40455 1.24910 1.84791 1.42787 1.47940 1.33540 1.03527 1.19524 0.96296 0.94926 0.87719 1.21700 1.09046 1.03416 0.98257 1.23150 0.99976 0.96447 0.89870 1.48559 1.34319 1.22036 1.07664 1.19411 0.98112 0.97239 0.71192 1.22290 0.92450 1.56768 0.94537 0.93654 1.27312 1.07752 0.92008 0.94777 1.70948 0.98751 1.47159 1.39045 0.82873 0.69800 0.77834 0.75372 1.19933 1.19671 1.19925 1.77259 1.19756 1.19204 1.01470 1.21747 0.99224 0.81368 0.91568 0.89937 1.22519 1.02423 1.01578 0.97018 1.86718 1.27839 1.26924 1.96518 0.91737 0.95817 0.90985 0.90233 0.86710 0.74090 0.81763 0.78373 0.92982 0.96563 0.92991 0.90350 0.91830 0.89437 0.76956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.32 71.98 0.67 -1.98 16 2 C -0.11 -1.29 5.31 30.59 0.16 -1.13 16 3 C -0.13 -1.91 2.29 -11.54 -0.03 -1.94 16 4 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 5 C 0.52 14.06 5.47 87.65 0.48 14.53 16 6 O -0.53 -18.80 12.39 15.16 0.19 -18.61 16 7 N -0.63 -18.75 5.29 -307.51 -1.63 -20.38 16 8 C 0.27 11.00 8.10 133.33 1.08 12.08 16 9 C -0.29 -11.93 9.61 22.11 0.21 -11.71 16 10 C 0.05 2.20 11.43 83.52 0.96 3.16 16 11 N -0.34 -16.59 3.67 -351.85 -1.29 -17.88 16 12 C 0.26 13.62 5.57 85.64 0.48 14.10 16 13 C -0.62 -35.88 9.24 25.60 0.24 -35.65 16 14 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 15 C -0.02 -1.07 5.46 84.65 0.46 -0.60 16 16 N -0.92 -54.41 13.65 21.45 0.29 -54.11 16 17 Si 1.12 49.88 29.90 68.60 2.05 51.93 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 N -0.35 -16.44 12.42 -54.45 -0.68 -17.12 16 22 C 0.12 1.95 2.47 30.60 0.08 2.03 16 23 H 0.08 1.70 6.65 -2.39 -0.02 1.68 16 24 C -0.18 -1.53 9.19 71.98 0.66 -0.86 16 25 O -0.57 -12.21 12.15 -130.76 -1.59 -13.79 16 26 H 0.06 0.97 6.80 -2.39 -0.02 0.95 16 27 H 0.02 0.55 6.90 -2.38 -0.02 0.53 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 0.83 7.63 -2.39 -0.02 0.82 16 30 H 0.11 0.61 6.21 -2.39 -0.01 0.60 16 31 H 0.42 10.06 8.28 -92.71 -0.77 9.30 16 32 H 0.17 6.57 5.94 -2.91 -0.02 6.55 16 33 H 0.20 6.50 8.06 -2.91 -0.02 6.48 16 34 H 0.05 2.63 7.94 -2.39 -0.02 2.61 16 35 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 36 H 0.26 15.21 7.22 -92.71 -0.67 14.54 16 37 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 0.47 6.33 -2.39 -0.02 0.46 16 40 H 0.38 4.98 9.05 -74.06 -0.67 4.31 16 Total: -1.00 -77.59 329.64 2.53 -75.06 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.26 Total: 22.88 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 5.45 Total: -7.97 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -3.30 Total: -109.49 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.40 Total: -32.41 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 2.05 Total: 51.93 kcal Total: -77.59 2.53 -75.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558939341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.235 kcal (2) G-P(sol) polarization free energy of solvation -77.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds