Wall clock time and date at job start Tue Mar 31 2020 05:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46943 * 2 1 4 4 H 1.09001 * 109.46793 * 181.24753 * 3 2 1 5 5 C 1.50698 * 109.47050 * 61.25017 * 3 2 1 6 6 O 1.21296 * 119.99464 * 240.00085 * 5 3 2 7 7 N 1.34775 * 120.00262 * 60.27104 * 5 3 2 8 8 C 1.40153 * 120.00052 * 179.72678 * 7 5 3 9 9 C 1.40413 * 125.97282 * 359.71424 * 8 7 5 10 10 C 1.35243 * 107.86817 * 179.86766 * 9 8 7 11 11 N 1.34966 * 107.85666 * 0.39451 * 10 9 8 12 12 C 1.46502 * 125.97346 * 179.74984 * 11 10 9 13 13 C 1.50702 * 109.47021 * 124.97746 * 12 11 10 14 14 H 1.07995 * 120.00194 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99554 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00459 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99591 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46936 * 60.00016 * 17 15 13 19 19 H 1.48493 * 109.46820 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47218 * 300.00495 * 17 15 13 21 21 N 1.31217 * 125.97486 * 180.02562 * 8 7 5 22 22 C 1.53001 * 109.47245 * 301.24802 * 3 2 1 23 23 H 1.09001 * 109.46954 * 60.30709 * 22 3 2 24 24 C 1.53008 * 109.47081 * 300.31614 * 22 3 2 25 25 O 1.42893 * 109.47184 * 180.31573 * 22 3 2 26 26 H 1.08996 * 109.47399 * 66.90916 * 1 2 3 27 27 H 1.08996 * 109.47124 * 186.90718 * 1 2 3 28 28 H 1.08999 * 109.47244 * 306.90546 * 1 2 3 29 29 H 1.09001 * 109.47206 * 240.00308 * 2 1 3 30 30 H 1.08994 * 109.47609 * 119.99722 * 2 1 3 31 31 H 0.96998 * 119.99572 * 359.73365 * 7 5 3 32 32 H 1.08002 * 126.06411 * 0.02562 * 9 8 7 33 33 H 1.07993 * 126.07262 * 180.14700 * 10 9 8 34 34 H 1.09006 * 109.47152 * 244.97677 * 12 11 10 35 35 H 1.09001 * 109.46934 * 4.97772 * 12 11 10 36 36 H 0.97003 * 120.00022 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47314 * 64.21752 * 24 22 3 38 38 H 1.08998 * 109.46873 * 184.22601 * 24 22 3 39 39 H 1.08998 * 109.47007 * 304.22410 * 24 22 3 40 40 H 0.96696 * 114.00461 * 60.00143 * 25 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1297 1.4426 -0.0224 5 6 1.5630 2.1439 1.2457 6 8 0.8636 3.1308 1.1558 7 7 1.9182 1.6779 2.4594 8 6 1.4794 2.3335 3.6177 9 6 0.6746 3.4833 3.6599 10 6 0.4718 3.8005 4.9589 11 7 1.1285 2.8944 5.7135 12 6 1.1788 2.8682 7.1774 13 6 0.7149 1.5224 7.6720 14 1 0.4132 0.7624 6.9664 15 6 0.6767 1.2609 9.0253 16 7 1.0445 2.1861 9.8844 17 14 0.1009 -0.4071 9.6383 18 1 0.9861 -1.4674 9.0928 19 1 0.1533 -0.4341 11.1221 20 1 -1.2935 -0.6460 9.1871 21 7 1.7535 1.9835 4.8523 22 6 1.5044 2.1729 -1.2332 23 1 0.4147 2.1775 -1.2080 24 6 1.9821 1.4561 -2.4978 25 8 1.9867 3.5179 -1.2371 26 1 -0.3634 0.4030 -0.9453 27 1 -0.3633 -1.0202 0.1236 28 1 -0.3634 0.6171 0.8217 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8899 31 1 2.4776 0.8887 2.5311 32 1 0.2844 4.0180 2.8065 33 1 -0.1089 4.6333 5.3270 34 1 2.2022 3.0441 7.5090 35 1 0.5285 3.6462 7.5773 36 1 1.0173 2.0022 10.8365 37 1 1.5531 0.4547 -2.5320 38 1 1.6640 2.0180 -3.3760 39 1 3.0698 1.3852 -2.4863 40 1 2.9507 3.5901 -1.2590 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001558939342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:58 Heat of formation + Delta-G solvation = -41.007535 kcal Electronic energy + Delta-G solvation = -22081.866052 eV Core-core repulsion = 18704.306190 eV Total energy + Delta-G solvation = -3377.559862 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.26734 -41.06368 -38.43115 -36.19557 -35.69719 -35.10430 -32.74864 -30.98732 -30.86599 -29.15186 -28.14816 -25.10611 -24.29338 -23.48515 -22.13982 -21.33412 -20.37225 -18.71047 -18.53067 -17.88983 -17.48973 -17.08893 -16.68828 -16.26857 -16.00364 -15.75414 -15.15880 -14.83496 -14.58613 -14.33712 -14.10342 -14.06932 -13.82456 -13.64742 -13.22641 -12.96983 -12.90163 -12.72638 -12.67797 -12.29506 -12.12164 -12.04310 -11.97378 -11.59019 -11.44487 -11.35665 -10.94295 -10.73342 -10.59629 -9.75590 -9.11463 -8.33957 -6.48582 0.97723 1.36714 1.39448 1.40331 1.48855 1.50934 2.25667 2.29885 2.43357 2.97667 3.43992 3.54012 3.68206 3.96858 4.04508 4.17447 4.25761 4.31411 4.39143 4.45178 4.74810 4.78304 4.79935 4.88770 4.91536 4.96267 5.01731 5.05113 5.14697 5.17318 5.25776 5.30240 5.46353 5.55229 5.78763 5.95281 6.24924 6.31920 6.63327 6.96443 7.03929 7.19913 7.21455 8.73572 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029797 B = 0.003545 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.467360 B = 7896.828493 C = 8534.538113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.114 4.114 3 C -0.125 4.125 4 H 0.134 0.866 5 C 0.521 3.479 6 O -0.536 6.536 7 N -0.627 5.627 8 C 0.266 3.734 9 C -0.296 4.296 10 C 0.055 3.945 11 N -0.344 5.344 12 C 0.273 3.727 13 C -0.550 4.550 14 H 0.052 0.948 15 C 0.019 3.981 16 N -0.921 5.921 17 Si 0.972 3.028 18 H -0.272 1.272 19 H -0.273 1.273 20 H -0.270 1.270 21 N -0.346 5.346 22 C 0.120 3.880 23 H 0.083 0.917 24 C -0.178 4.178 25 O -0.574 6.574 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.022 0.978 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.421 0.579 32 H 0.164 0.836 33 H 0.199 0.801 34 H 0.021 0.979 35 H 0.057 0.943 36 H 0.273 0.727 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 -4.376 -23.201 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.151 4.151 3 C -0.147 4.147 4 H 0.152 0.848 5 C 0.309 3.691 6 O -0.410 6.410 7 N -0.277 5.277 8 C 0.012 3.988 9 C -0.327 4.327 10 C -0.094 4.094 11 N -0.126 5.126 12 C 0.154 3.846 13 C -0.588 4.588 14 H 0.071 0.929 15 C -0.182 4.182 16 N -0.560 5.560 17 Si 0.796 3.204 18 H -0.197 1.197 19 H -0.197 1.197 20 H -0.195 1.195 21 N -0.177 5.177 22 C 0.061 3.939 23 H 0.101 0.899 24 C -0.235 4.235 25 O -0.381 6.381 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.133 0.867 30 H 0.095 0.905 31 H 0.259 0.741 32 H 0.181 0.819 33 H 0.216 0.784 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.796 -4.319 -22.215 22.803 hybrid contribution 0.083 -0.376 0.560 0.680 sum 2.879 -4.695 -21.655 22.344 Atomic orbital electron populations 1.21913 0.96444 1.02192 1.01481 1.21630 0.95746 0.92415 1.05315 1.22305 1.04239 0.97283 0.90850 0.84834 1.21449 0.79422 0.84121 0.84125 1.90662 1.37199 1.26686 1.86436 1.42768 1.52118 1.30949 1.01909 1.19519 0.97869 0.94309 0.87117 1.21701 1.11603 1.02377 0.97023 1.23142 0.98420 0.96616 0.91223 1.48833 1.37075 1.19375 1.07341 1.19330 0.97579 0.98641 0.69033 1.21374 1.45888 0.99066 0.92448 0.92934 1.25757 0.94712 1.01464 0.96251 1.69987 1.47503 1.35408 1.03059 0.85392 0.78928 0.78740 0.77333 1.19696 1.19737 1.19485 1.77241 1.24786 1.17328 0.98386 1.21761 0.98959 0.81232 0.91990 0.89916 1.22503 1.03087 1.01684 0.96215 1.86716 1.27430 1.26983 1.96927 0.91370 0.91156 0.95853 0.86711 0.90543 0.74122 0.81914 0.78405 0.96075 0.92504 0.91784 0.89625 0.91813 0.90261 0.76941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.20 71.98 0.66 -2.04 16 2 C -0.11 -1.35 5.23 30.59 0.16 -1.19 16 3 C -0.13 -1.93 2.28 -11.54 -0.03 -1.96 16 4 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 5 C 0.52 14.18 5.66 87.66 0.50 14.67 16 6 O -0.54 -19.00 12.42 14.20 0.18 -18.83 16 7 N -0.63 -18.88 5.34 -307.51 -1.64 -20.52 16 8 C 0.27 10.88 8.11 133.33 1.08 11.96 16 9 C -0.30 -12.11 9.61 22.11 0.21 -11.90 16 10 C 0.05 2.25 11.44 83.52 0.96 3.20 16 11 N -0.34 -16.60 3.67 -351.83 -1.29 -17.89 16 12 C 0.27 14.43 6.26 85.63 0.54 14.97 16 13 C -0.55 -31.39 9.24 25.60 0.24 -31.15 16 14 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 15 C 0.02 1.03 5.46 84.66 0.46 1.50 16 16 N -0.92 -52.61 13.29 21.45 0.28 -52.33 16 17 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 N -0.35 -16.41 12.42 -54.45 -0.68 -17.08 16 22 C 0.12 1.98 2.32 30.60 0.07 2.05 16 23 H 0.08 1.75 6.53 -2.39 -0.02 1.74 16 24 C -0.18 -1.56 9.05 71.98 0.65 -0.91 16 25 O -0.57 -12.19 12.26 -131.70 -1.61 -13.80 16 26 H 0.07 0.99 6.81 -2.39 -0.02 0.98 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.02 0.55 7.03 -2.39 -0.02 0.53 16 29 H 0.11 0.65 6.59 -2.39 -0.02 0.63 16 30 H 0.08 0.89 7.54 -2.39 -0.02 0.87 16 31 H 0.42 10.10 8.23 -92.71 -0.76 9.34 16 32 H 0.16 6.57 5.92 -2.91 -0.02 6.56 16 33 H 0.20 6.54 8.06 -2.91 -0.02 6.51 16 34 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.06 2.94 8.07 -2.39 -0.02 2.92 16 36 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.08 0.51 6.69 -2.39 -0.02 0.49 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.38 4.89 9.05 -74.06 -0.67 4.22 16 Total: -1.00 -75.19 331.43 2.40 -72.79 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -0.36 Total: 22.73 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 5.50 Total: -0.80 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -3.32 Total: -107.83 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -1.44 Total: -32.63 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -75.19 2.40 -72.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558939342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.785 kcal (2) G-P(sol) polarization free energy of solvation -75.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds