Wall clock time and date at job start Tue Mar 31 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.53001 * 109.47301 * 120.00775 * 2 1 3 5 5 C 1.50692 * 109.46942 * 294.99605 * 4 2 1 6 6 H 1.08001 * 120.00536 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99828 * 180.02562 * 5 4 2 8 8 N 1.31523 * 120.00217 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00188 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47075 * 89.99822 * 9 7 5 11 11 H 1.48501 * 109.47100 * 210.00355 * 9 7 5 12 12 H 1.48500 * 109.46762 * 329.99974 * 9 7 5 13 13 C 1.53007 * 109.46594 * 240.00795 * 2 1 3 14 14 N 1.46895 * 109.47310 * 64.99903 * 13 2 1 15 15 C 1.46894 * 110.99977 * 179.97438 * 14 13 2 16 16 H 1.09001 * 109.47585 * 324.99678 * 15 14 13 17 17 C 1.50702 * 109.47157 * 85.00079 * 15 14 13 18 18 O 1.20822 * 119.99854 * 359.72240 * 17 15 14 19 19 O 1.34234 * 119.99997 * 180.02562 * 17 15 14 20 20 C 1.50709 * 109.47163 * 204.99777 * 15 14 13 21 21 C 1.35309 * 126.12384 * 4.69007 * 20 15 14 22 22 C 1.39874 * 107.91963 * 179.90340 * 21 20 15 23 23 N 1.30839 * 108.19757 * 0.36257 * 22 21 20 24 24 N 1.34951 * 126.12704 * 184.99927 * 20 15 14 25 25 C 1.46497 * 126.03443 * 359.97438 * 24 20 15 26 26 H 1.09007 * 109.46708 * 299.99061 * 1 2 3 27 27 H 1.08995 * 109.47758 * 59.99224 * 1 2 3 28 28 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47014 * 55.00204 * 4 2 1 30 30 H 1.09004 * 109.46587 * 174.99587 * 4 2 1 31 31 H 0.96998 * 119.99792 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47274 * 304.99491 * 13 2 1 33 33 H 1.09003 * 109.46480 * 184.99663 * 13 2 1 34 34 H 1.00902 * 111.00137 * 56.04083 * 14 13 2 35 35 H 0.96695 * 116.99910 * 179.72143 * 19 17 15 36 36 H 1.07997 * 126.04277 * 0.04008 * 21 20 15 37 37 H 1.08001 * 125.89954 * 180.14856 * 22 21 20 38 38 H 1.08997 * 109.47327 * 90.00075 * 25 24 20 39 39 H 1.09007 * 109.47088 * 210.00010 * 25 24 20 40 40 H 1.09003 * 109.47508 * 329.99878 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6415 0.0568 2.4765 6 1 1.0801 0.9739 2.3758 7 6 1.9935 -0.4021 3.7281 8 7 1.6452 0.2767 4.7994 9 14 2.9650 -1.9881 3.9024 10 1 4.4183 -1.6836 3.8780 11 1 2.6178 -2.6424 5.1894 12 1 2.6312 -2.8991 2.7781 13 6 2.0399 -0.7211 -1.2494 14 7 1.6512 0.0377 -2.4457 15 6 2.1255 -0.6261 -3.6672 16 1 3.0893 -1.0972 -3.4741 17 6 1.1289 -1.6754 -4.0881 18 8 0.1289 -1.8554 -3.4344 19 8 1.3553 -2.4140 -5.1858 20 6 2.2761 0.3934 -4.7669 21 6 2.1058 1.7301 -4.6442 22 6 2.3407 2.3105 -5.8949 23 7 2.6336 1.3555 -6.7400 24 7 2.5992 0.1361 -6.0516 25 6 2.8665 -1.1852 -6.6250 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6055 -1.7200 1.2949 30 1 3.1264 -0.7996 1.2053 31 1 1.8925 -0.0464 5.6799 32 1 1.6053 -1.7197 -1.2954 33 1 3.1263 -0.7993 -1.2058 34 1 1.9880 0.9876 -2.3966 35 1 0.6896 -3.0773 -5.4135 36 1 1.8382 2.2562 -3.7397 37 1 2.2860 3.3645 -6.1243 38 1 1.9365 -1.6146 -6.9975 39 1 3.5764 -1.0880 -7.4465 40 1 3.2857 -1.8363 -5.8578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589013260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:25 Heat of formation + Delta-G solvation = -7.397026 kcal Electronic energy + Delta-G solvation = -22311.260269 eV Core-core repulsion = 18935.157868 eV Total energy + Delta-G solvation = -3376.102401 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.72660 -40.21399 -37.34776 -36.19761 -34.58641 -33.40882 -32.21243 -30.36616 -27.90330 -27.13353 -26.76353 -25.01383 -22.59079 -21.82006 -21.06354 -20.19629 -19.10144 -18.30546 -17.64912 -17.05007 -16.61153 -15.71951 -15.29058 -15.20469 -14.62963 -14.53119 -14.22255 -13.90273 -13.70420 -13.50583 -13.06590 -12.84577 -12.56819 -12.30855 -12.23604 -11.81127 -11.70981 -11.53455 -10.95021 -10.90924 -10.78895 -10.68558 -10.37342 -9.93536 -9.66390 -9.53398 -9.47219 -9.06649 -8.75955 -8.53935 -8.50757 -6.01094 -3.98027 1.48067 2.02540 2.28488 2.53016 2.78843 3.31012 3.39028 3.42398 3.94932 4.05503 4.39521 4.47261 4.73404 4.87561 5.01481 5.07379 5.32139 5.38155 5.43886 5.48964 5.49763 5.61005 5.84953 5.96903 6.21408 6.26786 6.36655 6.43356 6.58554 6.66983 6.80326 6.94779 7.07621 7.20174 7.21872 7.32613 7.46275 7.49264 7.71789 7.82966 8.58149 9.04912 9.61643 11.12333 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.003771 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.562140 B = 7424.052344 C = 7822.599492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 H 0.062 0.938 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.075 0.925 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.059 3.941 14 N -0.657 5.657 15 C 0.168 3.832 16 H 0.095 0.905 17 C 0.474 3.526 18 O -0.468 6.468 19 O -0.523 6.523 20 C 0.074 3.926 21 C -0.249 4.249 22 C 0.046 3.954 23 N -0.292 5.292 24 N -0.361 5.361 25 C 0.107 3.893 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.016 0.984 30 H 0.008 0.992 31 H 0.262 0.738 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.359 0.641 35 H 0.406 0.594 36 H 0.156 0.844 37 H 0.187 0.813 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.182 -3.043 -23.900 24.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.089 4.089 3 H 0.081 0.919 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.093 0.907 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.069 4.069 14 N -0.293 5.293 15 C 0.054 3.946 16 H 0.113 0.887 17 C 0.312 3.688 18 O -0.351 6.351 19 O -0.337 6.337 20 C -0.054 4.054 21 C -0.279 4.279 22 C -0.139 4.139 23 N -0.114 5.114 24 N -0.144 5.144 25 C -0.034 4.034 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.183 0.817 35 H 0.266 0.734 36 H 0.173 0.827 37 H 0.204 0.796 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.901 -3.500 -24.706 25.121 hybrid contribution 0.791 -0.950 1.016 1.600 sum 3.691 -4.450 -23.690 24.385 Atomic orbital electron populations 1.21587 0.94840 1.00959 1.00712 1.20990 0.96738 0.98941 0.92274 0.91932 1.19614 0.95322 0.96331 0.93402 1.21116 1.35306 1.09558 0.89024 0.90720 1.25024 0.95729 0.96836 0.95965 1.69916 1.47193 1.39288 0.98000 0.86819 0.80563 0.84607 0.77516 1.20443 1.21465 1.19105 1.22390 0.97195 0.98276 0.89014 1.60110 1.63981 1.06243 0.98995 1.19287 0.95093 0.90372 0.89804 0.88733 1.23245 0.86707 0.80952 0.77910 1.90773 1.27115 1.65139 1.52085 1.84787 1.54176 1.50149 1.44574 1.20447 1.03129 0.95392 0.86450 1.21266 1.14148 0.92086 1.00387 1.23853 0.99257 0.99378 0.91368 1.77383 1.24519 0.89077 1.20461 1.48511 1.53166 1.07050 1.05642 1.22032 1.02827 0.78407 1.00100 0.92244 0.93532 0.94063 0.96546 0.97363 0.92831 0.90954 0.95090 0.81689 0.73398 0.82653 0.79645 0.89734 0.90031 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.07 -1.35 2.48 -90.61 -0.22 -1.58 16 3 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.01 -0.21 3.52 -27.89 -0.10 -0.30 16 5 C -0.51 -14.35 8.96 -34.44 -0.31 -14.66 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.86 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 9 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 13 C 0.06 0.92 4.77 -3.82 -0.02 0.90 16 14 N -0.66 -8.72 5.18 -109.18 -0.57 -9.28 16 15 C 0.17 1.89 2.62 -70.01 -0.18 1.71 16 16 H 0.10 0.92 7.80 -51.93 -0.40 0.52 16 17 C 0.47 5.53 7.50 36.01 0.27 5.80 16 18 O -0.47 -7.35 16.67 -18.75 -0.31 -7.66 16 19 O -0.52 -3.78 8.26 -39.27 -0.32 -4.10 16 20 C 0.07 0.83 6.23 -82.26 -0.51 0.32 16 21 C -0.25 -2.72 9.81 -40.01 -0.39 -3.11 16 22 C 0.05 0.49 12.03 -17.36 -0.21 0.28 16 23 N -0.29 -3.52 12.57 30.63 0.39 -3.13 16 24 N -0.36 -3.90 4.01 -63.88 -0.26 -4.16 16 25 C 0.11 0.78 9.31 59.85 0.56 1.34 16 26 H 0.06 1.28 6.95 -51.93 -0.36 0.91 16 27 H 0.05 0.83 7.75 -51.93 -0.40 0.43 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 30 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.07 1.20 7.61 -51.93 -0.40 0.81 16 33 H 0.03 0.45 8.05 -51.93 -0.42 0.03 16 34 H 0.36 4.30 6.47 -39.29 -0.25 4.05 16 35 H 0.41 1.45 9.10 45.56 0.41 1.86 16 36 H 0.16 1.50 6.78 -52.49 -0.36 1.15 16 37 H 0.19 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.08 0.54 6.75 -51.93 -0.35 0.19 16 39 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.09 0.57 6.68 -51.93 -0.35 0.22 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -35.06 327.26 -5.81 -40.87 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.88 Total: 2.22 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -0.89 Total: -9.60 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.34 Total: -43.67 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.64 Total: -11.76 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.06 -5.81 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589013260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.470 kcal (2) G-P(sol) polarization free energy of solvation -35.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds