Wall clock time and date at job start Tue Mar 31 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.53001 * 109.47301 * 120.00775 * 2 1 3 5 5 C 1.50692 * 109.46942 * 294.99605 * 4 2 1 6 6 H 1.08001 * 120.00536 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99828 * 180.02562 * 5 4 2 8 8 N 1.31523 * 120.00217 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00188 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47075 * 89.99822 * 9 7 5 11 11 H 1.48501 * 109.47100 * 210.00355 * 9 7 5 12 12 H 1.48500 * 109.46762 * 329.99974 * 9 7 5 13 13 C 1.53007 * 109.46594 * 240.00795 * 2 1 3 14 14 N 1.46895 * 109.47310 * 64.99903 * 13 2 1 15 15 C 1.46894 * 110.99977 * 179.97438 * 14 13 2 16 16 H 1.09001 * 109.47585 * 324.99678 * 15 14 13 17 17 C 1.50702 * 109.47157 * 85.00079 * 15 14 13 18 18 O 1.20822 * 119.99854 * 359.72240 * 17 15 14 19 19 O 1.34234 * 119.99997 * 180.02562 * 17 15 14 20 20 C 1.50709 * 109.47163 * 204.99777 * 15 14 13 21 21 C 1.35309 * 126.12384 * 4.69007 * 20 15 14 22 22 C 1.39874 * 107.91963 * 179.90340 * 21 20 15 23 23 N 1.30839 * 108.19757 * 0.36257 * 22 21 20 24 24 N 1.34951 * 126.12704 * 184.99927 * 20 15 14 25 25 C 1.46497 * 126.03443 * 359.97438 * 24 20 15 26 26 H 1.09007 * 109.46708 * 299.99061 * 1 2 3 27 27 H 1.08995 * 109.47758 * 59.99224 * 1 2 3 28 28 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47014 * 55.00204 * 4 2 1 30 30 H 1.09004 * 109.46587 * 174.99587 * 4 2 1 31 31 H 0.96998 * 119.99792 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47274 * 304.99491 * 13 2 1 33 33 H 1.09003 * 109.46480 * 184.99663 * 13 2 1 34 34 H 1.00902 * 111.00137 * 56.04083 * 14 13 2 35 35 H 0.96695 * 116.99910 * 179.72143 * 19 17 15 36 36 H 1.07997 * 126.04277 * 0.04008 * 21 20 15 37 37 H 1.08001 * 125.89954 * 180.14856 * 22 21 20 38 38 H 1.08997 * 109.47327 * 90.00075 * 25 24 20 39 39 H 1.09007 * 109.47088 * 210.00010 * 25 24 20 40 40 H 1.09003 * 109.47508 * 329.99878 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6415 0.0568 2.4765 6 1 1.0801 0.9739 2.3758 7 6 1.9935 -0.4021 3.7281 8 7 1.6452 0.2767 4.7994 9 14 2.9650 -1.9881 3.9024 10 1 4.4183 -1.6836 3.8780 11 1 2.6178 -2.6424 5.1894 12 1 2.6312 -2.8991 2.7781 13 6 2.0399 -0.7211 -1.2494 14 7 1.6512 0.0377 -2.4457 15 6 2.1255 -0.6261 -3.6672 16 1 3.0893 -1.0972 -3.4741 17 6 1.1289 -1.6754 -4.0881 18 8 0.1289 -1.8554 -3.4344 19 8 1.3553 -2.4140 -5.1858 20 6 2.2761 0.3934 -4.7669 21 6 2.1058 1.7301 -4.6442 22 6 2.3407 2.3105 -5.8949 23 7 2.6336 1.3555 -6.7400 24 7 2.5992 0.1361 -6.0516 25 6 2.8665 -1.1852 -6.6250 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6055 -1.7200 1.2949 30 1 3.1264 -0.7996 1.2053 31 1 1.8925 -0.0464 5.6799 32 1 1.6053 -1.7197 -1.2954 33 1 3.1263 -0.7993 -1.2058 34 1 1.9880 0.9876 -2.3966 35 1 0.6896 -3.0773 -5.4135 36 1 1.8382 2.2562 -3.7397 37 1 2.2860 3.3645 -6.1243 38 1 1.9365 -1.6146 -6.9975 39 1 3.5764 -1.0880 -7.4465 40 1 3.2857 -1.8363 -5.8578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589013260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:24 Heat of formation + Delta-G solvation = -33.533967 kcal Electronic energy + Delta-G solvation = -22312.393652 eV Core-core repulsion = 18935.157868 eV Total energy + Delta-G solvation = -3377.235784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.52124 -41.06124 -38.51749 -37.11979 -35.99245 -34.32946 -34.00063 -31.49248 -29.41485 -28.33859 -27.52174 -26.39219 -24.15309 -22.81387 -21.91591 -21.22602 -20.44093 -19.13493 -18.95446 -18.39676 -17.74656 -16.63607 -16.42591 -16.16646 -16.01952 -15.64479 -15.36463 -15.14908 -14.75157 -14.65032 -14.29605 -14.15443 -13.62384 -13.58356 -13.41144 -13.03930 -12.91317 -12.81730 -12.46741 -12.37796 -12.13595 -11.82489 -11.74489 -11.59970 -11.45406 -11.20976 -11.04300 -10.70674 -10.32878 -9.61064 -9.48749 -8.23319 -6.25470 0.67751 1.16964 1.36986 1.39894 1.51088 1.57264 1.75599 2.02229 2.39931 2.98269 3.12086 3.22249 3.72566 3.92146 4.07365 4.17768 4.29898 4.40808 4.47456 4.54423 4.67472 4.75370 4.80517 4.87705 4.90805 4.96068 5.08799 5.13209 5.40561 5.43278 5.53729 5.58582 5.68546 5.69857 5.74487 5.80634 5.99646 6.25503 6.37762 6.68223 6.82454 6.98258 7.37919 8.93474 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.003771 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.562140 B = 7424.052344 C = 7822.599492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.067 4.067 3 H 0.061 0.939 4 C -0.007 4.007 5 C -0.517 4.517 6 H 0.036 0.964 7 C 0.001 3.999 8 N -0.955 5.955 9 Si 0.947 3.053 10 H -0.265 1.265 11 H -0.289 1.289 12 H -0.248 1.248 13 C 0.075 3.925 14 N -0.665 5.665 15 C 0.171 3.829 16 H 0.117 0.883 17 C 0.481 3.519 18 O -0.516 6.516 19 O -0.504 6.504 20 C 0.068 3.932 21 C -0.263 4.263 22 C 0.043 3.957 23 N -0.320 5.320 24 N -0.363 5.363 25 C 0.098 3.902 26 H 0.028 0.972 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.014 0.986 30 H 0.021 0.979 31 H 0.264 0.736 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.366 0.634 35 H 0.425 0.575 36 H 0.163 0.837 37 H 0.212 0.788 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.696 -4.594 -25.987 26.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 H 0.080 0.920 4 C -0.045 4.045 5 C -0.555 4.555 6 H 0.054 0.946 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.771 3.229 10 H -0.190 1.190 11 H -0.215 1.215 12 H -0.172 1.172 13 C -0.054 4.054 14 N -0.303 5.303 15 C 0.057 3.943 16 H 0.135 0.865 17 C 0.321 3.679 18 O -0.402 6.402 19 O -0.319 6.319 20 C -0.061 4.061 21 C -0.293 4.293 22 C -0.141 4.141 23 N -0.142 5.142 24 N -0.146 5.146 25 C -0.041 4.041 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.191 0.809 35 H 0.288 0.712 36 H 0.180 0.820 37 H 0.228 0.772 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.427 -5.066 -26.858 27.688 hybrid contribution 0.265 -0.404 1.578 1.651 sum 4.693 -5.470 -25.280 26.287 Atomic orbital electron populations 1.21467 0.95495 1.00223 0.99896 1.20850 0.96096 0.98949 0.92657 0.92021 1.19564 0.96016 0.95735 0.93138 1.21454 1.34198 1.08672 0.91210 0.94599 1.25998 0.97145 1.00844 0.95550 1.70080 1.49210 1.41626 0.98700 0.85704 0.79320 0.79982 0.77901 1.18990 1.21466 1.17153 1.22049 0.97942 0.97284 0.88094 1.59942 1.64662 1.06606 0.99062 1.19279 0.95866 0.90343 0.88799 0.86548 1.23302 0.85802 0.80789 0.78001 1.90769 1.28946 1.66694 1.53809 1.84737 1.54568 1.50067 1.42485 1.20462 1.03409 0.95482 0.86724 1.21503 1.14438 0.92353 1.00966 1.24321 0.98326 1.00476 0.90964 1.77345 1.25590 0.89880 1.21393 1.48772 1.52739 1.07672 1.05424 1.22307 1.03664 0.77278 1.00884 0.95314 0.91941 0.94689 0.96760 0.96047 0.92749 0.91753 0.93235 0.80910 0.71178 0.81985 0.77174 0.88874 0.89084 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 8.89 71.98 0.64 -3.83 16 2 C -0.07 -2.50 2.48 -10.79 -0.03 -2.52 16 3 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 4 C -0.01 -0.30 3.52 29.85 0.10 -0.20 16 5 C -0.52 -29.53 8.96 25.60 0.23 -29.30 16 6 H 0.04 2.26 7.30 -2.91 -0.02 2.24 16 7 C 0.00 0.03 5.47 84.65 0.46 0.50 16 8 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 9 Si 0.95 44.24 27.47 68.60 1.88 46.13 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 13 C 0.07 2.16 4.77 86.31 0.41 2.57 16 14 N -0.67 -16.29 5.18 -499.35 -2.58 -18.87 16 15 C 0.17 3.39 2.62 43.43 0.11 3.50 16 16 H 0.12 1.84 7.80 -2.39 -0.02 1.82 16 17 C 0.48 10.09 7.50 71.24 0.53 10.62 16 18 O -0.52 -15.42 16.67 21.98 0.37 -15.05 16 19 O -0.50 -5.72 8.26 -51.46 -0.42 -6.15 16 20 C 0.07 1.38 6.23 41.41 0.26 1.64 16 21 C -0.26 -5.28 9.81 21.99 0.22 -5.06 16 22 C 0.04 0.83 12.03 85.24 1.03 1.86 16 23 N -0.32 -7.13 12.57 -57.02 -0.72 -7.85 16 24 N -0.36 -7.03 4.01 -356.02 -1.43 -8.46 16 25 C 0.10 1.16 9.31 127.77 1.19 2.35 16 26 H 0.03 1.26 6.95 -2.38 -0.02 1.25 16 27 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 28 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 29 H 0.01 0.65 7.20 -2.39 -0.02 0.64 16 30 H 0.02 0.92 7.57 -2.38 -0.02 0.91 16 31 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.06 1.99 7.61 -2.39 -0.02 1.97 16 33 H 0.05 1.25 8.05 -2.39 -0.02 1.24 16 34 H 0.37 8.04 6.47 -89.69 -0.58 7.46 16 35 H 0.43 1.70 9.10 -74.06 -0.67 1.03 16 36 H 0.16 2.89 6.78 -2.91 -0.02 2.87 16 37 H 0.21 2.60 8.06 -2.91 -0.02 2.57 16 38 H 0.09 0.92 6.75 -2.39 -0.02 0.91 16 39 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.11 0.94 6.68 -2.39 -0.02 0.93 16 Total: -1.00 -76.92 327.26 2.31 -74.61 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -0.24 Total: 13.57 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 5.16 Total: -17.88 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -4.43 Total: -95.23 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.06 Total: -21.20 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.13 kcal Total: -76.92 2.31 -74.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589013260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.071 kcal (2) G-P(sol) polarization free energy of solvation -76.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds