Wall clock time and date at job start Tue Mar 31 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46503 * 109.47220 * 2 1 4 4 C 1.34949 * 126.03739 * 124.97180 * 3 2 1 5 5 C 1.35313 * 107.74448 * 180.02562 * 4 3 2 6 6 C 1.50703 * 126.03868 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46928 * 269.97082 * 6 5 4 8 8 N 1.46501 * 109.46921 * 178.19245 * 7 6 5 9 9 C 1.36938 * 119.99588 * 87.61914 * 8 7 6 10 10 H 1.07995 * 120.00529 * 322.67042 * 9 8 7 11 11 C 1.38815 * 119.99826 * 142.67602 * 9 8 7 12 12 N 1.31616 * 120.00084 * 157.17847 * 11 9 8 13 13 Si 1.86799 * 119.99890 * 337.17131 * 11 9 8 14 14 H 1.48498 * 109.47321 * 95.36675 * 13 11 9 15 15 H 1.48501 * 109.47354 * 215.36754 * 13 11 9 16 16 H 1.48504 * 109.47326 * 335.36966 * 13 11 9 17 17 C 1.46494 * 120.00290 * 267.61635 * 8 7 6 18 18 C 1.52998 * 109.47206 * 90.00255 * 17 8 7 19 19 C 1.50703 * 109.47411 * 180.02562 * 18 17 8 20 20 O 1.20826 * 119.99614 * 359.97438 * 19 18 17 21 21 O 1.34227 * 120.00313 * 180.02562 * 19 18 17 22 22 C 1.39864 * 107.92304 * 359.97438 * 5 4 3 23 23 N 1.30838 * 108.20074 * 0.02562 * 22 5 4 24 24 H 1.08999 * 109.47583 * 299.99931 * 1 2 3 25 25 H 1.09002 * 109.47264 * 60.00250 * 1 2 3 26 26 H 1.08999 * 109.47686 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47583 * 240.00069 * 2 1 3 28 28 H 1.09002 * 109.47264 * 119.99750 * 2 1 3 29 29 H 1.08003 * 126.12614 * 0.02562 * 4 3 2 30 30 H 1.09001 * 109.46852 * 29.96736 * 6 5 4 31 31 H 1.08997 * 109.47359 * 149.96760 * 6 5 4 32 32 H 1.09002 * 109.46971 * 298.19055 * 7 6 5 33 33 H 1.08999 * 109.47173 * 58.19240 * 7 6 5 34 34 H 0.97005 * 119.99903 * 180.02562 * 12 11 9 35 35 H 1.09000 * 109.47626 * 210.00223 * 17 8 7 36 36 H 1.09004 * 109.46903 * 330.00516 * 17 8 7 37 37 H 1.08999 * 109.46954 * 299.99942 * 18 17 8 38 38 H 1.08998 * 109.47383 * 59.99714 * 18 17 8 39 39 H 0.96697 * 117.00050 * 179.97438 * 21 19 18 40 40 H 1.08000 * 125.89836 * 180.26415 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8726 1.9212 0.8942 5 6 3.0709 3.2138 0.5465 6 6 3.9542 4.2001 1.2664 7 6 3.1389 4.9279 2.3371 8 7 4.0076 5.8557 3.0658 9 6 4.1921 7.1300 2.5997 10 1 4.2577 7.3123 1.5373 11 6 4.2949 8.1876 3.4930 12 7 4.9002 9.2987 3.1305 13 14 3.5739 8.0339 5.2093 14 1 4.6352 7.6053 6.1555 15 1 3.0303 9.3478 5.6374 16 1 2.4831 7.0262 5.1997 17 6 4.6788 5.4201 4.2929 18 6 6.0424 4.8208 3.9431 19 6 6.7327 4.3721 5.2054 20 8 6.1898 4.5174 6.2751 21 8 7.9509 3.8122 5.1416 22 6 2.3123 3.4725 -0.5997 23 7 1.6807 2.3747 -0.9281 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.3182 1.4128 1.7365 30 1 4.7818 3.6700 1.7377 31 1 4.3462 4.9250 0.5530 32 1 2.3303 5.4840 1.8626 33 1 2.7203 4.2002 3.0323 34 1 4.9723 10.0376 3.7549 35 1 4.8168 6.2751 4.9547 36 1 4.0689 4.6680 4.7933 37 1 5.9044 3.9657 3.2814 38 1 6.6523 5.5728 3.4427 39 1 8.3537 3.5407 5.9777 40 1 2.2602 4.4145 -1.1253 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605920060.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:08 Heat of formation + Delta-G solvation = 1.856574 kcal Electronic energy + Delta-G solvation = -21952.558024 eV Core-core repulsion = 18576.856889 eV Total energy + Delta-G solvation = -3375.701135 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.01862 -39.85741 -36.65489 -35.73648 -34.63095 -32.41961 -31.72285 -30.27335 -29.89572 -27.27455 -24.73810 -24.08050 -23.26247 -21.00259 -20.57118 -20.30787 -19.62224 -17.80651 -16.83426 -16.70398 -15.95893 -15.87269 -15.46645 -15.02015 -14.30072 -14.13549 -14.07782 -13.58482 -13.20453 -12.97164 -12.81570 -12.55457 -12.39871 -12.28638 -12.14877 -11.81114 -11.69652 -11.46680 -11.21402 -11.18154 -10.84240 -10.55906 -10.34983 -10.22895 -9.90345 -9.81343 -9.45575 -9.25118 -8.56133 -8.12486 -6.85897 -6.02010 -3.44903 2.04883 2.59557 2.60384 3.05681 3.38315 3.45291 3.52088 3.57841 4.40239 4.54028 4.75949 4.91213 4.98806 5.00169 5.18995 5.30332 5.35534 5.53150 5.54914 5.61885 5.75631 5.78430 5.89925 5.95310 6.11525 6.13578 6.23432 6.34104 6.43327 6.56264 6.70345 6.83497 6.86195 6.89653 7.01237 7.20325 7.88160 8.02099 8.23785 8.37425 8.96189 9.69278 10.08275 11.12760 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015144 B = 0.004703 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.432870 B = 5952.376768 C = 7041.469355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.134 3.866 3 N -0.381 5.381 4 C 0.042 3.958 5 C -0.215 4.215 6 C -0.063 4.063 7 C 0.154 3.846 8 N -0.601 5.601 9 C -0.275 4.275 10 H 0.083 0.917 11 C 0.041 3.959 12 N -0.895 5.895 13 Si 0.870 3.130 14 H -0.281 1.281 15 H -0.301 1.301 16 H -0.268 1.268 17 C 0.148 3.852 18 C -0.133 4.133 19 C 0.477 3.523 20 O -0.524 6.524 21 O -0.524 6.524 22 C 0.052 3.948 23 N -0.303 5.303 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.168 0.832 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.399 0.601 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 -18.103 -2.894 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 N -0.164 5.164 4 C -0.102 4.102 5 C -0.227 4.227 6 C -0.104 4.104 7 C 0.028 3.972 8 N -0.322 5.322 9 C -0.403 4.403 10 H 0.100 0.900 11 C -0.160 4.160 12 N -0.536 5.536 13 Si 0.700 3.300 14 H -0.209 1.209 15 H -0.229 1.229 16 H -0.193 1.193 17 C 0.021 3.979 18 C -0.173 4.173 19 C 0.320 3.680 20 O -0.412 6.412 21 O -0.335 6.335 22 C -0.134 4.134 23 N -0.125 5.125 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.185 0.815 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.130 0.870 39 H 0.257 0.743 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.972 -18.442 -3.769 19.056 hybrid contribution 0.628 0.176 2.196 2.291 sum -2.344 -18.266 -1.573 18.482 Atomic orbital electron populations 1.22050 0.94067 1.02503 1.03662 1.21571 0.95879 0.78048 1.03279 1.48568 1.36287 1.09885 1.21700 1.22303 0.96457 0.95036 0.96447 1.20348 1.07188 0.94867 1.00264 1.20650 0.96303 0.95272 0.98170 1.20929 0.92067 0.91699 0.92488 1.44174 1.50341 1.10671 1.26970 1.18754 1.46832 0.81062 0.93641 0.89973 1.25448 0.97571 0.95101 0.97916 1.69877 1.41089 1.06013 1.36593 0.87031 0.80691 0.76382 0.85866 1.20873 1.22929 1.19313 1.21066 0.89236 0.97902 0.89648 1.22401 0.99734 1.02901 0.92258 1.24247 0.78386 0.72750 0.92590 1.90682 1.65723 1.52632 1.32195 1.84626 1.33812 1.73517 1.41565 1.23863 0.95722 0.97208 0.96563 1.77236 1.24111 0.97156 1.13963 0.92052 0.91146 0.91038 0.90257 0.89005 0.81512 0.92316 0.90894 0.92498 0.94646 0.92639 0.91929 0.93394 0.88438 0.86969 0.74332 0.80141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 10.10 37.15 0.38 -0.94 16 2 C 0.13 1.12 7.23 -4.05 -0.03 1.09 16 3 N -0.38 -4.78 3.68 -61.37 -0.23 -5.00 16 4 C 0.04 0.54 11.36 -17.22 -0.20 0.34 16 5 C -0.21 -3.12 5.35 -105.05 -0.56 -3.68 16 6 C -0.06 -1.00 6.02 -27.88 -0.17 -1.17 16 7 C 0.15 2.87 5.69 -4.04 -0.02 2.85 16 8 N -0.60 -13.36 2.08 -173.24 -0.36 -13.72 16 9 C -0.27 -7.25 9.92 -15.06 -0.15 -7.40 16 10 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 11 C 0.04 1.15 5.30 -17.43 -0.09 1.05 16 12 N -0.90 -26.63 13.97 55.49 0.78 -25.85 16 13 Si 0.87 22.36 25.07 -169.99 -4.26 18.10 16 14 H -0.28 -7.29 6.66 56.52 0.38 -6.91 16 15 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 16 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.15 3.14 3.84 -4.05 -0.02 3.13 16 18 C -0.13 -2.36 6.14 -27.88 -0.17 -2.53 16 19 C 0.48 8.17 8.33 36.01 0.30 8.47 16 20 O -0.52 -10.56 16.74 -18.75 -0.31 -10.87 16 21 O -0.52 -7.03 13.42 -39.25 -0.53 -7.56 16 22 C 0.05 0.77 11.96 -17.37 -0.21 0.56 16 23 N -0.30 -4.50 12.42 30.62 0.38 -4.12 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 29 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.06 0.88 6.38 -51.93 -0.33 0.55 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 33 H 0.04 0.62 7.86 -51.93 -0.41 0.21 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.06 1.53 3.23 -51.93 -0.17 1.36 16 36 H 0.05 0.96 7.83 -51.93 -0.41 0.55 16 37 H 0.10 1.49 6.38 -51.93 -0.33 1.16 16 38 H 0.11 2.13 8.14 -51.93 -0.42 1.71 16 39 H 0.40 3.50 9.10 45.56 0.41 3.91 16 40 H 0.18 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 337.74 15.07 5.09 5.09 Total: -1.00 -33.69 337.74 -5.42 -39.11 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.03 Total: 3.06 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -0.94 Total: 1.77 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.57 Total: -48.70 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.84 Total: -18.43 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.26 Total: 18.10 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.69 -5.42 -39.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605920060.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.965 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds