Wall clock time and date at job start Tue Mar 31 2020 05:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47273 * 2 1 4 4 C 1.52998 * 109.47204 * 120.00363 * 2 1 3 5 5 C 1.52998 * 109.47220 * 175.00262 * 4 2 1 6 6 H 1.09001 * 109.47276 * 54.99741 * 5 4 2 7 7 C 1.53002 * 109.47228 * 175.00037 * 5 4 2 8 8 N 1.46497 * 109.47558 * 174.99723 * 7 5 4 9 9 C 1.36939 * 120.00333 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99554 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99934 * 180.02562 * 9 8 7 12 12 N 1.31613 * 119.99804 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99946 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.47023 * 90.00301 * 13 11 9 15 15 H 1.48498 * 109.47251 * 209.99720 * 13 11 9 16 16 H 1.48492 * 109.47451 * 330.00248 * 13 11 9 17 17 N 1.46500 * 109.46810 * 294.99569 * 5 4 2 18 18 C 1.34775 * 119.99817 * 85.00416 * 17 5 4 19 19 O 1.21680 * 120.00005 * 359.97438 * 18 17 5 20 20 C 1.46728 * 120.00046 * 179.97438 * 18 17 5 21 21 C 1.36337 * 126.64293 * 180.02562 * 20 18 17 22 22 N 1.33695 * 107.44965 * 180.02562 * 21 20 18 23 23 C 1.30620 * 108.99730 * 359.97438 * 22 21 20 24 24 O 1.33665 * 109.15088 * 0.24955 * 23 22 21 25 25 H 1.09004 * 109.47401 * 300.00011 * 1 2 3 26 26 H 1.09009 * 109.47310 * 60.00071 * 1 2 3 27 27 H 1.09004 * 109.47548 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47401 * 239.99988 * 2 1 3 29 29 H 1.09000 * 109.47429 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47237 * 300.00105 * 3 2 1 31 31 H 1.09004 * 109.46917 * 59.99692 * 3 2 1 32 32 H 1.08992 * 109.47205 * 54.99679 * 4 2 1 33 33 H 1.09007 * 109.46861 * 295.00121 * 4 2 1 34 34 H 1.09008 * 109.46648 * 295.00150 * 7 5 4 35 35 H 1.09004 * 109.47038 * 54.99300 * 7 5 4 36 36 H 0.97001 * 119.99428 * 0.02562 * 8 7 5 37 37 H 0.96997 * 119.99926 * 179.97438 * 12 11 9 38 38 H 0.97005 * 120.00203 * 264.99629 * 17 5 4 39 39 H 1.07996 * 126.27616 * 359.97438 * 21 20 18 40 40 H 1.08002 * 125.42040 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1879 6 1 3.9953 0.1611 1.0527 7 6 4.0851 -1.4395 2.4918 8 7 5.5304 -1.6552 2.3875 9 6 6.2201 -2.1940 3.4407 10 1 5.6985 -2.4595 4.3484 11 6 7.5896 -2.3978 3.3420 12 7 8.2525 -2.9152 4.3544 13 14 8.4916 -1.9378 1.7723 14 1 8.9585 -0.5310 1.8638 15 1 9.6600 -2.8362 1.5913 16 1 7.5735 -2.0802 0.6139 17 7 3.9479 -1.6872 0.0625 18 6 4.0651 -1.1630 -1.1735 19 8 3.8523 0.0213 -1.3548 20 6 4.4494 -2.0203 -2.3006 21 6 4.6074 -1.6353 -3.5989 22 7 4.9596 -2.7188 -4.2984 23 6 5.0244 -3.7436 -3.4910 24 8 4.7105 -3.3474 -2.2536 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1370 34 1 3.8778 -0.7595 3.3181 35 1 3.5876 -2.3925 2.6720 36 1 5.9989 -1.4156 1.5726 37 1 9.2094 -3.0580 4.2854 38 1 4.1173 -2.6313 0.2070 39 1 4.4721 -0.6380 -3.9906 40 1 5.2852 -4.7514 -3.7784 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698872548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:45 Heat of formation + Delta-G solvation = -4.927262 kcal Electronic energy + Delta-G solvation = -22809.213875 eV Core-core repulsion = 19433.218571 eV Total energy + Delta-G solvation = -3375.995304 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.55280 -40.05551 -36.96665 -35.25123 -35.03891 -33.62621 -31.59873 -30.64628 -29.35950 -27.01494 -25.87032 -24.43697 -22.90086 -22.46180 -21.23288 -20.51142 -19.83442 -18.63582 -17.67672 -16.98685 -16.92461 -16.13133 -15.72856 -14.72524 -14.52465 -14.35195 -14.26908 -13.84581 -13.60530 -13.45819 -13.28034 -12.83333 -12.33177 -12.24450 -12.13392 -11.75187 -11.67767 -11.36761 -11.22953 -11.02950 -10.92453 -10.66245 -10.43778 -10.30502 -10.18845 -10.08334 -9.67191 -9.29452 -9.01255 -8.89365 -7.33582 -5.84205 -3.20799 0.71803 2.29205 2.34366 3.06637 3.21264 3.31288 3.35755 3.40627 3.97372 4.52319 4.66651 4.78278 4.79948 5.02085 5.04279 5.32933 5.36233 5.41935 5.43161 5.46342 5.53796 5.72213 5.77900 5.86122 5.88636 5.95835 6.00394 6.01443 6.14011 6.24655 6.32237 6.47115 6.52568 6.65523 6.67739 7.27451 7.53932 7.90357 8.08113 8.34287 9.12404 9.84723 10.03429 11.33884 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.006989 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.828165 B = 4005.154803 C = 5762.086965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.139 4.139 4 C -0.123 4.123 5 C 0.130 3.870 6 H 0.096 0.904 7 C 0.148 3.852 8 N -0.755 5.755 9 C -0.247 4.247 10 H 0.092 0.908 11 C 0.008 3.992 12 N -0.931 5.931 13 Si 0.883 3.117 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.280 1.280 17 N -0.698 5.698 18 C 0.602 3.398 19 O -0.510 6.510 20 C -0.102 4.102 21 C 0.044 3.956 22 N -0.497 5.497 23 C 0.196 3.804 24 O -0.187 6.187 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.409 0.591 39 H 0.196 0.804 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.085 1.335 -13.778 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.196 4.196 4 C -0.162 4.162 5 C 0.026 3.974 6 H 0.114 0.886 7 C 0.021 3.979 8 N -0.401 5.401 9 C -0.377 4.377 10 H 0.110 0.890 11 C -0.188 4.188 12 N -0.578 5.578 13 Si 0.713 3.287 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.206 1.206 17 N -0.349 5.349 18 C 0.387 3.613 19 O -0.388 6.388 20 C -0.157 4.157 21 C -0.098 4.098 22 N -0.225 5.225 23 C -0.029 4.029 24 O -0.073 6.073 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.245 0.755 39 H 0.213 0.787 40 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -13.067 2.000 -14.207 19.406 hybrid contribution 0.845 -0.353 -0.380 0.992 sum -12.222 1.646 -14.588 19.102 Atomic orbital electron populations 1.21859 0.96097 1.01060 1.01319 1.21157 0.94525 0.97250 0.98358 1.21842 1.02807 0.94954 1.00034 1.22027 0.94381 1.01012 0.98735 1.21588 0.94708 0.95472 0.85585 0.88644 1.20963 0.85724 0.98167 0.93061 1.42696 1.03036 1.77597 1.16790 1.19034 0.90764 1.33712 0.94206 0.89048 1.24650 0.96258 1.00817 0.97046 1.69691 1.08022 1.49765 1.30368 0.86592 0.79732 0.78291 0.84091 1.21002 1.21632 1.20611 1.45995 1.68045 1.13921 1.06904 1.16379 0.77711 0.86007 0.81198 1.90889 1.50855 1.13562 1.83521 1.23429 1.12122 0.81693 0.98485 1.23563 0.98308 0.99346 0.88616 1.70436 1.18629 0.98973 1.34479 1.28406 0.96778 1.01128 0.76595 1.84546 1.64650 1.23557 1.34504 0.92922 0.93152 0.93267 0.90995 0.90759 0.93638 0.93961 0.91627 0.90545 0.93672 0.94840 0.80490 0.92967 0.75532 0.78710 0.72912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.19 37.15 0.34 -1.18 16 2 C -0.09 -1.16 2.38 -90.62 -0.22 -1.37 16 3 C -0.14 -1.78 8.03 37.16 0.30 -1.48 16 4 C -0.12 -1.50 4.36 -26.73 -0.12 -1.62 16 5 C 0.13 1.93 2.33 -67.93 -0.16 1.77 16 6 H 0.10 1.54 5.92 -51.93 -0.31 1.23 16 7 C 0.15 2.63 5.82 -4.04 -0.02 2.61 16 8 N -0.75 -17.15 5.24 -59.90 -0.31 -17.46 16 9 C -0.25 -6.80 10.47 -15.06 -0.16 -6.96 16 10 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 11 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 12 N -0.93 -28.83 13.97 55.49 0.78 -28.05 16 13 Si 0.88 22.16 27.73 -169.99 -4.71 17.44 16 14 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 16 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 17 N -0.70 -10.23 4.46 -55.10 -0.25 -10.48 16 18 C 0.60 8.96 6.34 -12.83 -0.08 8.88 16 19 O -0.51 -8.13 11.84 5.21 0.06 -8.07 16 20 C -0.10 -1.39 7.18 -36.84 -0.26 -1.66 16 21 C 0.04 0.57 11.66 -17.43 -0.20 0.36 16 22 N -0.50 -6.11 11.26 -14.67 -0.17 -6.28 16 23 C 0.20 1.95 13.21 52.25 0.69 2.64 16 24 O -0.19 -2.35 10.57 4.43 0.05 -2.30 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.99 5.19 -51.93 -0.27 0.72 16 29 H 0.07 1.09 4.75 -51.93 -0.25 0.84 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.36 8.28 5.20 -40.82 -0.21 8.07 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.41 5.92 8.40 -40.82 -0.34 5.58 16 39 H 0.20 2.14 8.06 -52.49 -0.42 1.72 16 40 H 0.26 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 327.50 15.07 4.94 4.94 Total: -1.00 -32.63 327.50 -5.23 -37.86 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.62 Total: 10.26 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 0.01 Total: 2.14 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.05 Total: -62.27 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.11 Total: -10.37 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.63 -5.23 -37.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698872548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.935 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds