Wall clock time and date at job start Tue Mar 31 2020 05:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47273 * 2 1 4 4 C 1.52998 * 109.47204 * 120.00363 * 2 1 3 5 5 C 1.52998 * 109.47220 * 175.00262 * 4 2 1 6 6 H 1.09001 * 109.47276 * 54.99741 * 5 4 2 7 7 C 1.53002 * 109.47228 * 175.00037 * 5 4 2 8 8 N 1.46497 * 109.47558 * 174.99723 * 7 5 4 9 9 C 1.36939 * 120.00333 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99554 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99934 * 180.02562 * 9 8 7 12 12 N 1.31613 * 119.99804 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99946 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.47023 * 90.00301 * 13 11 9 15 15 H 1.48498 * 109.47251 * 209.99720 * 13 11 9 16 16 H 1.48492 * 109.47451 * 330.00248 * 13 11 9 17 17 N 1.46500 * 109.46810 * 294.99569 * 5 4 2 18 18 C 1.34775 * 119.99817 * 85.00416 * 17 5 4 19 19 O 1.21680 * 120.00005 * 359.97438 * 18 17 5 20 20 C 1.46728 * 120.00046 * 179.97438 * 18 17 5 21 21 C 1.36337 * 126.64293 * 180.02562 * 20 18 17 22 22 N 1.33695 * 107.44965 * 180.02562 * 21 20 18 23 23 C 1.30620 * 108.99730 * 359.97438 * 22 21 20 24 24 O 1.33665 * 109.15088 * 0.24955 * 23 22 21 25 25 H 1.09004 * 109.47401 * 300.00011 * 1 2 3 26 26 H 1.09009 * 109.47310 * 60.00071 * 1 2 3 27 27 H 1.09004 * 109.47548 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47401 * 239.99988 * 2 1 3 29 29 H 1.09000 * 109.47429 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47237 * 300.00105 * 3 2 1 31 31 H 1.09004 * 109.46917 * 59.99692 * 3 2 1 32 32 H 1.08992 * 109.47205 * 54.99679 * 4 2 1 33 33 H 1.09007 * 109.46861 * 295.00121 * 4 2 1 34 34 H 1.09008 * 109.46648 * 295.00150 * 7 5 4 35 35 H 1.09004 * 109.47038 * 54.99300 * 7 5 4 36 36 H 0.97001 * 119.99428 * 0.02562 * 8 7 5 37 37 H 0.96997 * 119.99926 * 179.97438 * 12 11 9 38 38 H 0.97005 * 120.00203 * 264.99629 * 17 5 4 39 39 H 1.07996 * 126.27616 * 359.97438 * 21 20 18 40 40 H 1.08002 * 125.42040 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1879 6 1 3.9953 0.1611 1.0527 7 6 4.0851 -1.4395 2.4918 8 7 5.5304 -1.6552 2.3875 9 6 6.2201 -2.1940 3.4407 10 1 5.6985 -2.4595 4.3484 11 6 7.5896 -2.3978 3.3420 12 7 8.2525 -2.9152 4.3544 13 14 8.4916 -1.9378 1.7723 14 1 8.9585 -0.5310 1.8638 15 1 9.6600 -2.8362 1.5913 16 1 7.5735 -2.0802 0.6139 17 7 3.9479 -1.6872 0.0625 18 6 4.0651 -1.1630 -1.1735 19 8 3.8523 0.0213 -1.3548 20 6 4.4494 -2.0203 -2.3006 21 6 4.6074 -1.6353 -3.5989 22 7 4.9596 -2.7188 -4.2984 23 6 5.0244 -3.7436 -3.4910 24 8 4.7105 -3.3474 -2.2536 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1370 34 1 3.8778 -0.7595 3.3181 35 1 3.5876 -2.3925 2.6720 36 1 5.9989 -1.4156 1.5726 37 1 9.2094 -3.0580 4.2854 38 1 4.1173 -2.6313 0.2070 39 1 4.4721 -0.6380 -3.9906 40 1 5.2852 -4.7514 -3.7784 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698872548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:44 Heat of formation + Delta-G solvation = -30.201329 kcal Electronic energy + Delta-G solvation = -22810.309841 eV Core-core repulsion = 19433.218571 eV Total energy + Delta-G solvation = -3377.091270 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.45604 -41.19075 -38.17888 -36.57506 -36.04929 -35.08572 -33.40031 -31.84505 -30.58335 -27.94800 -27.34660 -25.48416 -24.22016 -23.74460 -22.51099 -21.65297 -20.84416 -20.00966 -19.30541 -17.94205 -17.89370 -17.30190 -16.92830 -16.43648 -15.97007 -15.42454 -15.29843 -15.02772 -14.80035 -14.72393 -14.52845 -14.43513 -13.88792 -13.47205 -13.17380 -13.02140 -12.94254 -12.59772 -12.56482 -12.47268 -12.10923 -11.98428 -11.87002 -11.71285 -11.41629 -11.30276 -11.22289 -11.04289 -10.29458 -10.00314 -9.34173 -8.05813 -5.38736 -0.22635 1.31490 1.34724 1.39735 1.40642 1.43919 2.00112 2.15407 2.42705 3.24553 3.26881 3.42962 3.73847 3.85972 3.86392 4.06065 4.11063 4.30319 4.35331 4.45415 4.58446 4.61362 4.79469 4.83158 4.88956 4.91115 4.98462 5.09343 5.15636 5.17109 5.19243 5.38158 5.46785 5.56091 5.64131 5.74091 6.17959 6.27281 6.52375 6.96516 7.04060 7.79488 7.96957 9.15560 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.006989 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.828165 B = 4005.154803 C = 5762.086965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.115 4.115 5 C 0.142 3.858 6 H 0.083 0.917 7 C 0.147 3.853 8 N -0.757 5.757 9 C -0.229 4.229 10 H 0.065 0.935 11 C -0.056 4.056 12 N -0.979 5.979 13 Si 0.946 3.054 14 H -0.285 1.285 15 H -0.293 1.293 16 H -0.260 1.260 17 N -0.700 5.700 18 C 0.602 3.398 19 O -0.527 6.527 20 C -0.129 4.129 21 C 0.050 3.950 22 N -0.524 5.524 23 C 0.219 3.781 24 O -0.197 6.197 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.363 0.637 37 H 0.258 0.742 38 H 0.410 0.590 39 H 0.204 0.796 40 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.212 1.066 -15.521 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.193 4.193 4 C -0.154 4.154 5 C 0.038 3.962 6 H 0.101 0.899 7 C 0.020 3.980 8 N -0.403 5.403 9 C -0.360 4.360 10 H 0.083 0.917 11 C -0.248 4.248 12 N -0.630 5.630 13 Si 0.775 3.225 14 H -0.212 1.212 15 H -0.220 1.220 16 H -0.185 1.185 17 N -0.350 5.350 18 C 0.388 3.612 19 O -0.406 6.406 20 C -0.185 4.185 21 C -0.093 4.093 22 N -0.252 5.252 23 C -0.005 4.005 24 O -0.083 6.083 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.196 0.804 37 H 0.067 0.933 38 H 0.246 0.754 39 H 0.221 0.779 40 H 0.319 0.681 Dipole moment (debyes) X Y Z Total from point charges -14.248 1.749 -15.982 21.482 hybrid contribution 1.122 -0.317 0.151 1.176 sum -13.126 1.431 -15.831 20.614 Atomic orbital electron populations 1.21810 0.94433 1.01707 1.01932 1.21099 0.95837 0.96535 0.97535 1.21788 1.01395 0.95585 1.00500 1.21984 0.92210 1.01884 0.99333 1.21407 0.96292 0.94393 0.84146 0.89948 1.21137 0.82975 0.98843 0.95006 1.42698 1.04972 1.77124 1.15490 1.19046 0.90850 1.31826 0.94299 0.91691 1.25355 0.97323 1.01938 1.00184 1.69849 1.08159 1.52223 1.32750 0.85547 0.78498 0.77454 0.81002 1.21211 1.21977 1.18527 1.45966 1.68334 1.13839 1.06899 1.16487 0.77280 0.86012 0.81400 1.90879 1.51593 1.14289 1.83846 1.23182 1.14582 0.82371 0.98319 1.23792 0.97033 1.00018 0.88412 1.70487 1.20143 0.99470 1.35079 1.29611 0.93267 1.02315 0.75286 1.84548 1.65105 1.22981 1.35691 0.91991 0.92892 0.92613 0.92521 0.92854 0.93734 0.92895 0.90604 0.89366 0.93321 0.93864 0.80409 0.93315 0.75438 0.77885 0.68073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.19 71.98 0.66 -1.96 16 2 C -0.09 -2.09 2.38 -10.80 -0.03 -2.11 16 3 C -0.14 -3.30 8.03 71.98 0.58 -2.72 16 4 C -0.12 -2.59 4.36 30.59 0.13 -2.46 16 5 C 0.14 4.01 2.33 44.99 0.10 4.11 16 6 H 0.08 2.60 5.92 -2.39 -0.01 2.58 16 7 C 0.15 5.02 5.82 86.38 0.50 5.52 16 8 N -0.76 -33.69 5.24 -343.44 -1.80 -35.49 16 9 C -0.23 -12.63 10.47 84.03 0.88 -11.75 16 10 H 0.07 3.88 8.06 -2.91 -0.02 3.85 16 11 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 12 N -0.98 -61.74 13.97 21.65 0.30 -61.44 16 13 Si 0.95 45.78 27.73 68.60 1.90 47.68 16 14 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 15 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 16 H -0.26 -11.57 6.52 99.48 0.65 -10.92 16 17 N -0.70 -19.69 4.46 -446.46 -1.99 -21.68 16 18 C 0.60 17.38 6.34 86.46 0.55 17.93 16 19 O -0.53 -16.55 11.84 -4.28 -0.05 -16.60 16 20 C -0.13 -3.38 7.18 24.05 0.17 -3.21 16 21 C 0.05 1.20 11.66 83.97 0.98 2.18 16 22 N -0.52 -11.72 11.26 -315.09 -3.55 -15.27 16 23 C 0.22 3.70 13.21 130.42 1.72 5.42 16 24 O -0.20 -4.51 10.57 -7.08 -0.07 -4.58 16 25 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.06 1.49 5.19 -2.38 -0.01 1.48 16 29 H 0.05 1.53 4.75 -2.39 -0.01 1.52 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.36 16.08 5.20 -92.71 -0.48 15.59 16 37 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.41 11.31 8.40 -92.70 -0.78 10.53 16 39 H 0.20 4.30 8.06 -2.91 -0.02 4.27 16 40 H 0.30 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -70.60 327.50 1.21 -69.39 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -0.25 Total: 29.82 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 6.72 Total: 8.18 kcal Atomic # 7 Polarization: -126.84 SS G_CDS: -7.04 Total: -133.88 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.13 Total: -21.18 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.90 Total: 47.68 kcal Total: -70.60 1.21 -69.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698872548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.189 kcal (2) G-P(sol) polarization free energy of solvation -70.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds