Wall clock time and date at job start Tue Mar 31 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.41272 * 126.70344 * 85.00009 * 4 2 1 6 6 C 1.36822 * 103.84364 * 180.02562 * 5 4 2 7 7 C 1.47516 * 126.93920 * 180.02562 * 6 5 4 8 8 O 1.21580 * 120.00033 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99564 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99826 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47165 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47690 * 65.00085 * 11 10 9 13 13 C 1.53000 * 109.47148 * 185.00151 * 11 10 9 14 14 N 1.46499 * 109.47340 * 305.00038 * 11 10 9 15 15 C 1.36935 * 120.00323 * 154.99812 * 14 11 10 16 16 H 1.08002 * 120.00054 * 0.02562 * 15 14 11 17 17 C 1.38816 * 120.00090 * 179.97438 * 15 14 11 18 18 N 1.31618 * 119.99786 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99988 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46846 * 60.00413 * 19 17 15 21 21 H 1.48494 * 109.47135 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47145 * 300.00491 * 19 17 15 23 23 O 1.34642 * 106.11419 * 359.97438 * 6 5 4 24 24 N 1.20880 * 111.46712 * 359.71378 * 23 6 5 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.08001 * 128.07451 * 0.02562 * 5 4 2 33 33 H 0.97000 * 120.00249 * 0.02562 * 9 7 6 34 34 H 1.09004 * 109.47246 * 300.00329 * 10 9 7 35 35 H 1.09000 * 109.46883 * 59.99887 * 10 9 7 36 36 H 1.09000 * 109.47370 * 180.02562 * 13 11 10 37 37 H 1.09005 * 109.47282 * 299.99870 * 13 11 10 38 38 H 1.09002 * 109.47192 * 59.99798 * 13 11 10 39 39 H 0.97004 * 119.99534 * 334.99980 * 14 11 10 40 40 H 0.97006 * 119.99839 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.2208 -0.1479 -2.5124 6 6 2.6842 -1.1932 -3.2638 7 6 3.0486 -1.1648 -4.6930 8 8 2.9476 -0.1315 -5.3256 9 7 3.4934 -2.2844 -5.2973 10 6 3.8547 -2.2564 -6.7168 11 6 4.3242 -3.6463 -7.1510 12 1 3.4944 -4.3492 -7.0786 13 6 4.8188 -3.5886 -8.5977 14 7 5.4155 -4.0876 -6.2791 15 6 5.6595 -5.4245 -6.1107 16 1 5.0475 -6.1536 -6.6210 17 6 6.6940 -5.8427 -5.2849 18 7 7.4400 -4.9542 -4.6634 19 14 7.0262 -7.6664 -5.0546 20 1 7.3450 -8.2812 -6.3683 21 1 8.1748 -7.8475 -4.1310 22 1 5.8226 -8.3203 -4.4811 23 8 2.7417 -2.2527 -2.4349 24 7 2.3830 -1.9605 -1.3181 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 2.0410 0.8698 -2.8262 33 1 3.5736 -3.1089 -4.7926 34 1 2.9857 -1.9659 -7.3072 35 1 4.6576 -1.5360 -6.8731 36 1 5.1529 -4.5788 -8.9073 37 1 4.0068 -3.2602 -9.2466 38 1 5.6487 -2.8856 -8.6702 39 1 5.9654 -3.4328 -5.8210 40 1 8.1627 -5.2464 -4.0860 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752903839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:15 Heat of formation + Delta-G solvation = 21.033563 kcal Electronic energy + Delta-G solvation = -21816.247324 eV Core-core repulsion = 18441.377765 eV Total energy + Delta-G solvation = -3374.869558 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.96995 -39.44526 -36.77441 -36.40690 -33.72364 -32.52439 -32.16168 -31.47686 -28.76901 -27.50511 -26.34713 -24.16531 -23.87862 -23.14619 -21.60642 -20.27715 -19.59909 -18.16323 -17.68537 -17.28259 -16.18934 -15.91370 -15.30570 -14.92694 -14.59218 -14.49929 -13.96489 -13.81341 -13.60074 -13.46092 -13.08317 -12.48663 -12.34104 -12.16163 -12.07396 -11.87789 -11.75330 -11.59214 -11.41022 -11.06316 -10.86013 -10.77767 -10.41546 -10.19187 -10.15984 -10.03883 -9.73133 -9.70044 -8.99782 -8.83396 -7.06520 -5.81875 -3.12816 0.88047 2.03095 2.73013 3.13872 3.40707 3.42887 3.46800 3.47626 3.86502 4.39046 4.54515 4.75978 4.85153 4.88047 5.03395 5.17143 5.30755 5.34522 5.40079 5.44118 5.51206 5.53595 5.57508 5.68568 5.86926 5.87949 5.93475 5.95624 6.00936 6.13171 6.21785 6.50599 6.59655 6.73392 6.97716 7.60218 7.65098 8.10767 8.22300 8.35198 9.47198 10.00597 10.35944 11.39861 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017745 B = 0.004101 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.559150 B = 6825.489399 C = 7975.482055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.016 4.016 3 C -0.146 4.146 4 C 0.013 3.987 5 C -0.156 4.156 6 C -0.072 4.072 7 C 0.599 3.401 8 O -0.528 6.528 9 N -0.692 5.692 10 C 0.113 3.887 11 C 0.159 3.841 12 H 0.056 0.944 13 C -0.162 4.162 14 N -0.724 5.724 15 C -0.246 4.246 16 H 0.071 0.929 17 C -0.008 4.008 18 N -0.929 5.929 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.285 1.285 23 O 0.125 5.875 24 N -0.344 5.344 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.180 0.820 33 H 0.418 0.582 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.040 0.960 38 H 0.050 0.950 39 H 0.385 0.615 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.910 11.076 5.335 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.036 4.036 3 C -0.204 4.204 4 C -0.145 4.145 5 C -0.179 4.179 6 C -0.138 4.138 7 C 0.382 3.618 8 O -0.406 6.406 9 N -0.343 5.343 10 C -0.011 4.011 11 C 0.048 3.952 12 H 0.074 0.926 13 C -0.223 4.223 14 N -0.367 5.367 15 C -0.377 4.377 16 H 0.089 0.911 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.212 1.212 23 O 0.051 5.949 24 N -0.043 5.043 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.197 0.803 33 H 0.256 0.744 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.219 0.781 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.909 10.586 5.754 17.658 hybrid contribution 0.554 -0.540 0.126 0.783 sum -12.355 10.046 5.880 16.975 Atomic orbital electron populations 1.21831 0.93343 1.02486 1.02487 1.19527 0.96146 0.95467 0.92418 1.21859 1.01705 0.94210 1.02612 1.23587 1.02936 0.90656 0.97331 1.22720 1.02448 1.01220 0.91504 1.24346 1.06569 0.88304 0.94604 1.16547 0.78352 0.84563 0.82354 1.90831 1.55296 1.31201 1.63225 1.45946 1.63312 1.12382 1.12666 1.21857 1.00001 0.99746 0.79522 1.20520 0.92221 0.91605 0.90806 0.92637 1.22364 1.00140 1.02181 0.97622 1.42473 1.35376 1.05246 1.53593 1.19160 1.12173 0.83373 1.23033 0.91102 1.24743 0.98358 0.97499 0.99848 1.69650 1.21964 1.32186 1.33845 0.86286 0.77447 0.85065 0.77456 1.21295 1.21733 1.21171 1.85054 1.61981 1.34111 1.13706 1.73752 1.13919 1.17050 0.99608 0.92309 0.92078 0.91529 0.89243 0.91520 0.92058 0.91902 0.80281 0.74410 0.91154 0.91164 0.92199 0.94127 0.93135 0.78055 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.18 37.16 0.34 -0.79 16 2 C -0.02 -0.15 3.38 -91.77 -0.31 -0.46 16 3 C -0.15 -1.11 8.81 37.16 0.33 -0.78 16 4 C 0.01 0.16 6.20 -82.16 -0.51 -0.35 16 5 C -0.16 -2.04 10.13 -38.94 -0.39 -2.44 16 6 C -0.07 -1.10 7.29 -36.31 -0.26 -1.36 16 7 C 0.60 9.91 7.82 -12.48 -0.10 9.81 16 8 O -0.53 -9.65 16.91 5.30 0.09 -9.56 16 9 N -0.69 -11.45 5.38 -61.36 -0.33 -11.78 16 10 C 0.11 1.82 5.23 -4.05 -0.02 1.80 16 11 C 0.16 2.87 3.05 -67.93 -0.21 2.67 16 12 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 13 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 14 N -0.72 -16.76 4.56 -53.43 -0.24 -17.00 16 15 C -0.25 -6.44 9.93 -15.06 -0.15 -6.59 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 18 N -0.93 -27.17 13.06 55.49 0.72 -26.44 16 19 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 O 0.12 2.02 11.04 15.55 0.17 2.20 16 24 N -0.34 -5.35 12.04 33.52 0.40 -4.95 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.45 7.48 -51.93 -0.39 0.06 16 32 H 0.18 1.95 7.65 -52.49 -0.40 1.55 16 33 H 0.42 7.24 7.97 -40.82 -0.33 6.91 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.39 9.68 7.80 -40.82 -0.32 9.37 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -30.08 344.57 -6.09 -36.18 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.05 Total: 10.53 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.03 Total: -1.16 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 0.55 Total: -60.17 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.26 Total: -7.36 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.08 -6.09 -36.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752903839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.213 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds