Wall clock time and date at job start Tue Mar 31 2020 05:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47015 * 180.02562 * 9 7 6 11 11 C 1.41379 * 126.80134 * 124.71283 * 10 9 7 12 12 C 1.35457 * 103.98514 * 179.88645 * 11 10 9 13 13 C 1.50696 * 126.77724 * 180.13800 * 12 11 10 14 14 O 1.34035 * 106.44335 * 0.36405 * 12 11 10 15 15 N 1.20921 * 111.57148 * 359.75377 * 14 12 11 16 16 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 17 17 C 1.36941 * 119.99583 * 85.00384 * 16 3 2 18 18 H 1.07999 * 120.00378 * 359.97438 * 17 16 3 19 19 C 1.38814 * 119.99657 * 179.97438 * 17 16 3 20 20 N 1.31616 * 120.00233 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99719 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47101 * 89.99948 * 21 19 17 23 23 H 1.48499 * 109.46824 * 209.99835 * 21 19 17 24 24 H 1.48496 * 109.46857 * 329.99662 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 31 31 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 32 32 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.47087 * 300.00282 * 9 7 6 34 34 H 1.08996 * 109.47501 * 59.99922 * 9 7 6 35 35 H 1.08000 * 128.00961 * 0.02562 * 11 10 9 36 36 H 1.09005 * 109.47171 * 180.29776 * 13 12 11 37 37 H 1.08999 * 109.47100 * 300.29955 * 13 12 11 38 38 H 1.09000 * 109.47311 * 60.30045 * 13 12 11 39 39 H 0.96999 * 120.00274 * 264.99733 * 16 3 2 40 40 H 0.97001 * 119.99757 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 6 7.4000 4.4767 0.0878 11 6 8.3254 5.0104 -0.8382 12 6 9.5319 4.7670 -0.2725 13 6 10.8819 5.1310 -0.8347 14 8 9.2882 4.1340 0.8835 15 7 8.1025 3.9823 1.0659 16 7 1.6525 2.0974 -1.2519 17 6 0.4156 2.6734 -1.3689 18 1 -0.2743 2.6446 -0.5385 19 6 0.0486 3.2944 -2.5549 20 7 0.8896 3.3300 -3.5668 21 14 -1.6383 4.0807 -2.7143 22 1 -1.5656 5.5000 -2.2834 23 1 -2.0832 4.0153 -4.1296 24 1 -2.6071 3.3520 -1.8567 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8499 1.0378 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4409 3.5484 -0.1309 33 1 5.6133 4.8818 -1.0062 34 1 5.4672 5.0880 0.7556 35 1 8.1184 5.5008 -1.7779 36 1 11.6623 4.7980 -0.1504 37 1 11.0155 4.6462 -1.8017 38 1 10.9444 6.2121 -0.9585 39 1 2.2720 2.1231 -1.9978 40 1 0.6332 3.7642 -4.3954 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753469068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:08 Heat of formation + Delta-G solvation = 21.415143 kcal Electronic energy + Delta-G solvation = -21679.650461 eV Core-core repulsion = 18304.797449 eV Total energy + Delta-G solvation = -3374.853012 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.88386 -39.36105 -36.74814 -34.61081 -33.68169 -33.42003 -32.39397 -30.03378 -29.48845 -27.89528 -27.44335 -23.82376 -23.10288 -22.56298 -20.83894 -20.11345 -19.35907 -17.71845 -17.32434 -17.21246 -16.42227 -15.70410 -15.40172 -14.90054 -14.40551 -14.09235 -13.84077 -13.61503 -13.44700 -13.21408 -13.02438 -12.92895 -12.85809 -12.48096 -12.30475 -11.96872 -11.43607 -11.07025 -10.98725 -10.89833 -10.75437 -10.45166 -10.20905 -10.15213 -10.03953 -9.57292 -9.49671 -9.30236 -8.98215 -8.61434 -7.06414 -5.84668 -3.13771 1.49679 2.22974 2.95191 3.10990 3.36989 3.43733 3.44839 3.58105 4.14734 4.43246 4.51629 4.94872 5.03324 5.13606 5.14924 5.20269 5.36754 5.42070 5.42392 5.46091 5.55772 5.60485 5.80117 5.91409 5.95434 5.97215 6.02687 6.17326 6.42211 6.54305 6.57230 6.60244 6.90465 7.01905 7.23134 7.63734 7.93045 8.32792 8.35626 8.57936 9.44809 9.99810 10.36025 11.37215 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.003570 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.286613 B = 7842.226062 C = 8839.192348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.116 3.884 6 N -0.711 5.711 7 C 0.512 3.488 8 O -0.542 6.542 9 C -0.065 4.065 10 C 0.034 3.966 11 C -0.227 4.227 12 C -0.043 4.043 13 C -0.072 4.072 14 O 0.101 5.899 15 N -0.339 5.339 16 N -0.722 5.722 17 C -0.237 4.237 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.903 3.097 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.032 0.968 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.411 0.589 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.171 0.829 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.385 0.615 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.150 4.214 5.624 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.008 4.008 6 N -0.363 5.363 7 C 0.297 3.703 8 O -0.419 6.419 9 C -0.106 4.106 10 C -0.126 4.126 11 C -0.249 4.249 12 C -0.107 4.107 13 C -0.129 4.129 14 O 0.032 5.968 15 N -0.040 5.040 16 N -0.364 5.364 17 C -0.368 4.368 18 H 0.091 0.909 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.734 3.266 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 H 0.051 0.949 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.247 0.753 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.189 0.811 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.219 0.781 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.193 2.991 6.908 16.066 hybrid contribution -1.253 1.120 -1.365 2.166 sum 12.940 4.112 5.542 14.665 Atomic orbital electron populations 1.21770 0.95705 0.99639 1.03240 1.22068 0.96964 0.98418 1.00034 1.20565 0.89928 0.92802 0.91394 0.92834 1.21656 0.95545 0.82609 1.01038 1.45913 1.06828 1.10881 1.72710 1.20200 0.82702 0.90413 0.77026 1.90709 1.56020 1.46194 1.49025 1.20015 0.87853 0.96631 1.06053 1.22820 0.97353 1.00034 0.92346 1.22374 0.90926 1.08458 1.03135 1.24445 0.98642 0.98922 0.88665 1.20297 0.88903 1.02616 1.01104 1.84849 1.20349 1.57047 1.34556 1.73870 0.88844 1.17996 1.23297 1.42461 1.16777 1.65856 1.11295 1.19212 0.91956 1.27620 0.97985 0.90907 1.24731 0.98065 1.01606 0.96365 1.69660 1.35213 1.48918 1.04007 0.86259 0.84151 0.79301 0.76886 1.21767 1.21875 1.20764 0.94874 0.89667 0.94124 0.93851 0.92538 0.91948 0.91930 0.75286 0.86359 0.87096 0.81137 0.90051 0.89322 0.89344 0.78099 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.18 37.16 0.34 -2.28 16 2 C -0.13 -2.34 5.61 -26.73 -0.15 -2.49 16 3 C 0.16 3.02 2.59 -67.93 -0.18 2.84 16 4 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 5 C 0.12 2.02 5.23 -4.04 -0.02 1.99 16 6 N -0.71 -11.85 5.39 -60.29 -0.32 -12.17 16 7 C 0.51 8.75 7.82 -10.98 -0.09 8.67 16 8 O -0.54 -11.31 15.59 5.56 0.09 -11.22 16 9 C -0.06 -0.87 6.30 -29.04 -0.18 -1.05 16 10 C 0.03 0.49 6.10 -82.10 -0.50 -0.01 16 11 C -0.23 -2.65 11.05 -39.38 -0.44 -3.09 16 12 C -0.04 -0.47 7.49 -35.30 -0.26 -0.73 16 13 C -0.07 -0.42 10.45 36.00 0.38 -0.05 16 14 O 0.10 1.42 11.20 17.19 0.19 1.62 16 15 N -0.34 -5.56 11.46 33.42 0.38 -5.17 16 16 N -0.72 -16.25 4.51 -53.42 -0.24 -16.49 16 17 C -0.24 -5.92 7.75 -15.06 -0.12 -6.04 16 18 H 0.07 1.79 7.32 -52.49 -0.38 1.40 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -26.34 13.06 55.49 0.72 -25.62 16 21 Si 0.90 21.21 29.55 -169.99 -5.02 16.18 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 1.80 5.99 -51.93 -0.31 1.49 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 32 H 0.41 6.69 8.14 -40.82 -0.33 6.36 16 33 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.38 9.50 7.80 -40.82 -0.32 9.18 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 340.41 15.07 5.13 5.13 Total: -1.00 -32.08 340.41 -6.36 -38.44 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -5.97 Total: 11.92 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.31 Total: -2.62 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.54 Total: -59.45 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.28 Total: -9.60 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.08 -6.36 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753469068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.857 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds