Wall clock time and date at job start Tue Mar 31 2020 05:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47015 * 180.02562 * 9 7 6 11 11 C 1.41379 * 126.80134 * 124.71283 * 10 9 7 12 12 C 1.35457 * 103.98514 * 179.88645 * 11 10 9 13 13 C 1.50696 * 126.77724 * 180.13800 * 12 11 10 14 14 O 1.34035 * 106.44335 * 0.36405 * 12 11 10 15 15 N 1.20921 * 111.57148 * 359.75377 * 14 12 11 16 16 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 17 17 C 1.36941 * 119.99583 * 85.00384 * 16 3 2 18 18 H 1.07999 * 120.00378 * 359.97438 * 17 16 3 19 19 C 1.38814 * 119.99657 * 179.97438 * 17 16 3 20 20 N 1.31616 * 120.00233 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99719 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47101 * 89.99948 * 21 19 17 23 23 H 1.48499 * 109.46824 * 209.99835 * 21 19 17 24 24 H 1.48496 * 109.46857 * 329.99662 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 31 31 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 32 32 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.47087 * 300.00282 * 9 7 6 34 34 H 1.08996 * 109.47501 * 59.99922 * 9 7 6 35 35 H 1.08000 * 128.00961 * 0.02562 * 11 10 9 36 36 H 1.09005 * 109.47171 * 180.29776 * 13 12 11 37 37 H 1.08999 * 109.47100 * 300.29955 * 13 12 11 38 38 H 1.09000 * 109.47311 * 60.30045 * 13 12 11 39 39 H 0.96999 * 120.00274 * 264.99733 * 16 3 2 40 40 H 0.97001 * 119.99757 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 6 7.4000 4.4767 0.0878 11 6 8.3254 5.0104 -0.8382 12 6 9.5319 4.7670 -0.2725 13 6 10.8819 5.1310 -0.8347 14 8 9.2882 4.1340 0.8835 15 7 8.1025 3.9823 1.0659 16 7 1.6525 2.0974 -1.2519 17 6 0.4156 2.6734 -1.3689 18 1 -0.2743 2.6446 -0.5385 19 6 0.0486 3.2944 -2.5549 20 7 0.8896 3.3300 -3.5668 21 14 -1.6383 4.0807 -2.7143 22 1 -1.5656 5.5000 -2.2834 23 1 -2.0832 4.0153 -4.1296 24 1 -2.6071 3.3520 -1.8567 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8499 1.0378 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4409 3.5484 -0.1309 33 1 5.6133 4.8818 -1.0062 34 1 5.4672 5.0880 0.7556 35 1 8.1184 5.5008 -1.7779 36 1 11.6623 4.7980 -0.1504 37 1 11.0155 4.6462 -1.8017 38 1 10.9444 6.2121 -0.9585 39 1 2.2720 2.1231 -1.9978 40 1 0.6332 3.7642 -4.3954 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753469068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:08 Heat of formation + Delta-G solvation = -0.623662 kcal Electronic energy + Delta-G solvation = -21680.606135 eV Core-core repulsion = 18304.797449 eV Total energy + Delta-G solvation = -3375.808686 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.88392 -40.74949 -38.32228 -35.64901 -35.22707 -34.24434 -34.13599 -31.56304 -30.91539 -28.95839 -28.53545 -25.60517 -24.29192 -23.87888 -22.04217 -21.59443 -20.58159 -19.22472 -18.72044 -18.19063 -17.73820 -17.12093 -16.89362 -16.34452 -15.78182 -15.44518 -15.20482 -14.69568 -14.63861 -14.50086 -14.24242 -13.91694 -13.90623 -13.82238 -13.31525 -13.12150 -12.97659 -12.77871 -12.73396 -12.37461 -12.11289 -12.02501 -11.87354 -11.64216 -11.33981 -11.24323 -10.93692 -10.76479 -10.18931 -10.03669 -8.96901 -7.86405 -5.13568 0.60445 1.23677 1.51428 1.53338 1.59782 1.61972 2.25747 2.36927 2.61049 3.15814 3.47056 3.57132 3.86209 3.93957 3.97275 4.16185 4.25876 4.33468 4.36920 4.47308 4.51454 4.55779 4.69241 4.74582 4.77824 4.87016 4.93988 5.05279 5.08386 5.12783 5.20095 5.30262 5.46846 5.56488 5.62716 5.71296 6.33730 6.57668 7.23574 7.40139 7.41981 8.12562 8.38571 9.36393 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.003570 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.286613 B = 7842.226062 C = 8839.192348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.167 3.833 4 H 0.060 0.940 5 C 0.124 3.876 6 N -0.708 5.708 7 C 0.509 3.491 8 O -0.583 6.583 9 C -0.059 4.059 10 C 0.014 3.986 11 C -0.239 4.239 12 C -0.035 4.035 13 C -0.070 4.070 14 O 0.086 5.914 15 N -0.383 5.383 16 N -0.727 5.727 17 C -0.217 4.217 18 H 0.079 0.921 19 C -0.071 4.071 20 N -0.967 5.967 21 Si 0.959 3.041 22 H -0.288 1.288 23 H -0.305 1.305 24 H -0.273 1.273 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.414 0.586 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.198 0.802 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.373 0.627 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.470 4.881 6.222 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.058 3.942 4 H 0.078 0.922 5 C -0.001 4.001 6 N -0.359 5.359 7 C 0.296 3.704 8 O -0.464 6.464 9 C -0.099 4.099 10 C -0.144 4.144 11 C -0.260 4.260 12 C -0.099 4.099 13 C -0.127 4.127 14 O 0.019 5.981 15 N -0.088 5.088 16 N -0.367 5.367 17 C -0.348 4.348 18 H 0.097 0.903 19 C -0.263 4.263 20 N -0.618 5.618 21 Si 0.790 3.210 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.198 1.198 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.251 0.749 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.215 0.785 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.205 0.795 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.504 3.654 7.555 16.757 hybrid contribution -1.282 0.853 -1.489 2.142 sum 13.223 4.508 6.066 15.230 Atomic orbital electron populations 1.21695 0.95805 1.00607 1.01864 1.21999 0.96761 0.97464 1.00916 1.20681 0.90633 0.93241 0.89643 0.92227 1.21524 0.94526 0.83039 1.01011 1.45902 1.06999 1.10632 1.72377 1.20830 0.82221 0.91607 0.75756 1.90687 1.56891 1.47852 1.50930 1.20088 0.87518 0.94257 1.08074 1.23221 0.98093 1.00228 0.92890 1.22759 0.90491 1.08893 1.03842 1.25351 1.00592 0.96767 0.87168 1.20565 0.86306 1.04264 1.01607 1.84784 1.19629 1.57645 1.36075 1.73853 0.89865 1.20012 1.25042 1.42562 1.15853 1.66068 1.12256 1.19485 0.92466 1.25368 0.97516 0.90277 1.25352 1.00909 1.03447 0.96609 1.69800 1.36770 1.50890 1.04322 0.85352 0.81119 0.78570 0.75989 1.21580 1.23224 1.19844 0.92892 0.93149 0.93163 0.90925 0.93670 0.90877 0.93420 0.74930 0.84078 0.84978 0.78461 0.88995 0.87796 0.86944 0.79496 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 9.18 71.98 0.66 -4.16 16 2 C -0.13 -4.33 5.61 30.60 0.17 -4.16 16 3 C 0.17 5.95 2.59 44.99 0.12 6.07 16 4 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 5 C 0.12 4.21 5.23 86.38 0.45 4.66 16 6 N -0.71 -23.14 5.39 -463.06 -2.49 -25.63 16 7 C 0.51 17.26 7.82 87.66 0.69 17.95 16 8 O -0.58 -24.60 15.59 -3.03 -0.05 -24.65 16 9 C -0.06 -1.52 6.30 29.10 0.18 -1.34 16 10 C 0.01 0.41 6.10 43.58 0.27 0.68 16 11 C -0.24 -5.21 11.05 22.40 0.25 -4.96 16 12 C -0.04 -0.72 7.49 25.04 0.19 -0.53 16 13 C -0.07 -0.64 10.45 71.23 0.74 0.11 16 14 O 0.09 2.41 11.20 71.68 0.80 3.21 16 15 N -0.38 -12.71 11.46 -49.56 -0.57 -13.28 16 16 N -0.73 -32.41 4.51 -322.93 -1.46 -33.86 16 17 C -0.22 -10.68 7.75 84.03 0.65 -10.02 16 18 H 0.08 3.76 7.32 -2.91 -0.02 3.74 16 19 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 20 N -0.97 -55.42 13.06 21.65 0.28 -55.14 16 21 Si 0.96 43.60 29.55 68.60 2.03 45.63 16 22 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 2.06 5.99 -2.39 -0.01 2.05 16 27 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.41 13.11 8.14 -92.71 -0.75 12.36 16 33 H 0.14 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.20 2.99 8.06 -2.91 -0.02 2.96 16 36 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 38 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.37 18.52 7.80 -92.71 -0.72 17.79 16 40 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -70.24 340.41 2.96 -67.28 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: -0.42 Total: 35.44 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 4.83 Total: 1.00 kcal Atomic # 7 Polarization: -123.67 SS G_CDS: -4.24 Total: -127.91 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.76 Total: -21.44 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -70.24 2.96 -67.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753469068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.656 kcal (2) G-P(sol) polarization free energy of solvation -70.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds