Wall clock time and date at job start Tue Mar 31 2020 05:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.47075 * 180.02562 * 9 7 6 11 11 C 1.41386 * 126.80134 * 124.70931 * 10 9 7 12 12 C 1.35454 * 103.98143 * 179.88663 * 11 10 9 13 13 C 1.50700 * 126.77163 * 180.14017 * 12 11 10 14 14 O 1.34039 * 106.44705 * 0.37259 * 12 11 10 15 15 N 1.20921 * 111.57125 * 359.74503 * 14 12 11 16 16 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 3 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 3 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 3 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 27 27 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 28 28 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 29 29 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 30 30 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 31 31 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 32 32 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 33 33 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 34 34 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 35 35 H 1.07988 * 128.00696 * 0.02765 * 11 10 9 36 36 H 1.09008 * 109.46758 * 180.30488 * 13 12 11 37 37 H 1.09003 * 109.47169 * 300.29911 * 13 12 11 38 38 H 1.08999 * 109.47210 * 60.30175 * 13 12 11 39 39 H 0.97004 * 119.99747 * 95.00774 * 16 3 2 40 40 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 6 7.3999 4.4767 -0.0884 11 6 8.1725 5.2267 -1.0047 12 6 9.4500 4.8828 -0.7142 13 6 10.6972 5.3921 -1.3895 14 8 9.3855 3.9962 0.2890 15 7 8.2426 3.7840 0.6220 16 7 1.6524 2.0974 1.2518 17 6 0.4156 2.6734 1.3688 18 1 -0.2743 2.6446 0.5384 19 6 0.0486 3.2945 2.5548 20 7 0.8874 3.3249 3.5687 21 14 -1.6388 4.0796 2.7147 22 1 -1.7858 4.6654 4.0714 23 1 -1.7857 5.1494 1.6951 24 1 -2.6865 3.0484 2.5046 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8311 0.6659 31 1 3.8498 1.0377 -1.0961 32 1 3.4410 3.5483 0.1315 33 1 5.4672 5.0884 -0.7542 34 1 5.6136 4.8809 1.0075 35 1 7.8247 5.9160 -1.7598 36 1 11.5720 4.9254 -0.9365 37 1 10.6625 5.1454 -2.4506 38 1 10.7594 6.4737 -1.2697 39 1 2.2720 2.1231 1.9978 40 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753469069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:12 Heat of formation + Delta-G solvation = 22.315751 kcal Electronic energy + Delta-G solvation = -21717.507027 eV Core-core repulsion = 18342.693068 eV Total energy + Delta-G solvation = -3374.813958 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.92874 -39.44799 -36.88556 -34.66918 -33.83352 -33.46819 -32.61834 -30.05891 -29.33527 -27.93760 -27.35692 -23.69008 -23.13972 -22.63755 -20.91281 -20.25801 -19.43818 -17.74924 -17.49456 -17.26052 -16.61164 -15.81143 -15.42125 -14.75747 -14.64084 -14.24109 -13.86027 -13.65050 -13.54595 -13.28699 -13.27144 -13.01570 -12.96380 -12.53437 -12.33963 -11.92492 -11.62345 -11.10603 -11.01299 -10.82343 -10.57719 -10.37306 -10.20453 -10.13597 -9.90890 -9.58247 -9.35036 -9.23451 -8.98127 -8.71198 -7.12800 -6.14641 -3.16461 1.45667 2.18424 2.86199 3.06896 3.47239 3.48643 3.51166 3.67693 4.09988 4.37103 4.60919 4.89327 4.96569 5.04625 5.09985 5.13428 5.32545 5.34275 5.36617 5.39068 5.51349 5.56262 5.73548 5.82821 5.88728 5.89218 5.96681 6.08998 6.30451 6.46576 6.50297 6.54208 6.81346 6.94007 7.19521 7.75385 7.83486 8.32718 8.48944 8.69053 9.14038 10.00941 10.16143 11.32308 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.003501 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.143389 B = 7996.811177 C = 8835.503736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.169 3.831 4 H 0.055 0.945 5 C 0.115 3.885 6 N -0.713 5.713 7 C 0.512 3.488 8 O -0.540 6.540 9 C -0.065 4.065 10 C 0.032 3.968 11 C -0.229 4.229 12 C -0.043 4.043 13 C -0.072 4.072 14 O 0.103 5.897 15 N -0.335 5.335 16 N -0.733 5.733 17 C -0.328 4.328 18 H 0.067 0.933 19 C -0.043 4.043 20 N -0.941 5.941 21 Si 1.076 2.924 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.296 1.296 25 H 0.032 0.968 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.410 0.590 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.170 0.830 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.368 0.632 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.500 4.871 -11.764 18.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.073 0.927 5 C -0.010 4.010 6 N -0.365 5.365 7 C 0.296 3.704 8 O -0.418 6.418 9 C -0.105 4.105 10 C -0.127 4.127 11 C -0.251 4.251 12 C -0.106 4.106 13 C -0.129 4.129 14 O 0.034 5.966 15 N -0.036 5.036 16 N -0.376 5.376 17 C -0.459 4.459 18 H 0.085 0.915 19 C -0.241 4.241 20 N -0.586 5.586 21 Si 0.907 3.093 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.223 1.223 25 H 0.051 0.949 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.246 0.754 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.188 0.812 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.201 0.799 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.712 4.172 -10.015 16.712 hybrid contribution 0.557 -0.048 -1.420 1.526 sum 13.269 4.124 -11.434 17.995 Atomic orbital electron populations 1.21762 0.95549 0.99627 1.03348 1.22060 0.97130 0.98281 0.99976 1.20495 0.89766 0.92758 0.91065 0.92726 1.21680 0.95583 0.82614 1.01118 1.45932 1.06876 1.10840 1.72892 1.20232 0.82634 0.90472 0.77036 1.90714 1.55930 1.46182 1.48935 1.20008 0.87867 0.96562 1.06098 1.22808 0.96983 0.96981 0.95966 1.22329 0.91735 1.06565 1.04439 1.24462 0.98204 0.94706 0.93274 1.20300 0.91446 1.01460 0.99726 1.84870 1.23695 1.47234 1.40835 1.73907 0.89311 1.19042 1.21372 1.42473 1.16826 1.67044 1.11303 1.19991 0.92621 1.32320 1.00981 0.91464 1.25712 1.05693 1.00453 0.92278 1.70886 1.08461 1.47365 1.31930 0.83290 0.74337 0.75869 0.75793 1.21140 1.22303 1.22296 0.94858 0.89609 0.94090 0.93786 0.92702 0.91991 0.91836 0.75370 0.86720 0.86720 0.81229 0.89992 0.89372 0.89321 0.79864 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.18 37.15 0.34 -2.31 16 2 C -0.13 -2.36 5.61 -26.73 -0.15 -2.51 16 3 C 0.17 3.17 2.59 -67.93 -0.18 2.99 16 4 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 5 C 0.11 1.99 5.23 -4.04 -0.02 1.97 16 6 N -0.71 -11.83 5.39 -60.29 -0.32 -12.15 16 7 C 0.51 8.69 7.82 -10.99 -0.09 8.60 16 8 O -0.54 -11.20 15.59 5.55 0.09 -11.12 16 9 C -0.06 -0.86 6.30 -29.03 -0.18 -1.04 16 10 C 0.03 0.47 6.10 -82.09 -0.50 -0.04 16 11 C -0.23 -2.54 11.05 -39.38 -0.44 -2.97 16 12 C -0.04 -0.45 7.49 -35.30 -0.26 -0.72 16 13 C -0.07 -0.40 10.45 36.01 0.38 -0.02 16 14 O 0.10 1.47 11.20 17.18 0.19 1.66 16 15 N -0.34 -5.63 11.46 33.42 0.38 -5.25 16 16 N -0.73 -16.65 4.50 -53.43 -0.24 -16.89 16 17 C -0.33 -8.37 7.75 -15.06 -0.12 -8.48 16 18 H 0.07 1.70 7.32 -52.48 -0.38 1.31 16 19 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 20 N -0.94 -27.82 13.70 55.49 0.76 -27.06 16 21 Si 1.08 24.77 29.92 -169.99 -5.09 19.68 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.30 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.30 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.09 1.85 5.99 -51.93 -0.31 1.54 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.41 6.68 8.14 -40.82 -0.33 6.35 16 33 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.37 8.96 6.63 -40.82 -0.27 8.69 16 40 H 0.26 7.50 6.77 -40.82 -0.28 7.22 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -33.42 338.71 -6.30 -39.72 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -5.86 Total: 12.12 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -1.31 Total: -5.81 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.58 Total: -61.36 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.28 Total: -9.46 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.09 Total: 19.68 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.42 -6.30 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753469069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.034 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds