Wall clock time and date at job start Tue Mar 31 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.47075 * 180.02562 * 9 7 6 11 11 C 1.41386 * 126.80134 * 124.70931 * 10 9 7 12 12 C 1.35454 * 103.98143 * 179.88663 * 11 10 9 13 13 C 1.50700 * 126.77163 * 180.14017 * 12 11 10 14 14 O 1.34039 * 106.44705 * 0.37259 * 12 11 10 15 15 N 1.20921 * 111.57125 * 359.74503 * 14 12 11 16 16 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 3 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 3 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 3 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 27 27 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 28 28 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 29 29 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 30 30 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 31 31 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 32 32 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 33 33 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 34 34 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 35 35 H 1.07988 * 128.00696 * 0.02765 * 11 10 9 36 36 H 1.09008 * 109.46758 * 180.30488 * 13 12 11 37 37 H 1.09003 * 109.47169 * 300.29911 * 13 12 11 38 38 H 1.08999 * 109.47210 * 60.30175 * 13 12 11 39 39 H 0.97004 * 119.99747 * 95.00774 * 16 3 2 40 40 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 6 7.3999 4.4767 -0.0884 11 6 8.1725 5.2267 -1.0047 12 6 9.4500 4.8828 -0.7142 13 6 10.6972 5.3921 -1.3895 14 8 9.3855 3.9962 0.2890 15 7 8.2426 3.7840 0.6220 16 7 1.6524 2.0974 1.2518 17 6 0.4156 2.6734 1.3688 18 1 -0.2743 2.6446 0.5384 19 6 0.0486 3.2945 2.5548 20 7 0.8874 3.3249 3.5687 21 14 -1.6388 4.0796 2.7147 22 1 -1.7858 4.6654 4.0714 23 1 -1.7857 5.1494 1.6951 24 1 -2.6865 3.0484 2.5046 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8311 0.6659 31 1 3.8498 1.0377 -1.0961 32 1 3.4410 3.5483 0.1315 33 1 5.4672 5.0884 -0.7542 34 1 5.6136 4.8809 1.0075 35 1 7.8247 5.9160 -1.7598 36 1 11.5720 4.9254 -0.9365 37 1 10.6625 5.1454 -2.4506 38 1 10.7594 6.4737 -1.2697 39 1 2.2720 2.1231 1.9978 40 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753469069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:11 Heat of formation + Delta-G solvation = -1.129522 kcal Electronic energy + Delta-G solvation = -21718.523690 eV Core-core repulsion = 18342.693068 eV Total energy + Delta-G solvation = -3375.830622 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.92019 -40.83408 -38.49147 -35.71296 -35.40931 -34.35660 -34.25203 -31.49857 -30.85226 -28.91691 -28.54388 -25.51316 -24.38095 -23.94159 -22.12158 -21.74678 -20.64024 -19.43719 -18.79446 -18.22151 -17.90442 -17.19428 -16.86168 -16.27729 -16.09188 -15.50662 -15.39759 -14.75268 -14.72962 -14.64833 -14.26688 -13.95949 -13.92466 -13.80156 -13.32708 -13.20440 -13.13195 -12.73396 -12.56882 -12.12012 -12.04749 -12.00514 -11.83882 -11.56938 -11.29096 -11.19030 -10.95414 -10.80729 -10.21598 -10.13395 -9.08660 -8.27147 -5.23056 0.58922 1.21474 1.53389 1.62395 1.70653 1.86186 2.19840 2.34175 2.75548 3.13374 3.48119 3.52623 3.70751 3.81901 3.87913 4.13283 4.21279 4.24618 4.30499 4.37752 4.45386 4.50536 4.62892 4.66789 4.74999 4.77042 4.92205 4.99080 5.02274 5.04453 5.12165 5.29512 5.37623 5.46632 5.63098 5.72467 6.48345 6.57118 7.13010 7.15805 7.39351 8.03967 8.17297 9.23068 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.003501 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.143389 B = 7996.811177 C = 8835.503736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C 0.172 3.828 4 H 0.061 0.939 5 C 0.123 3.877 6 N -0.709 5.709 7 C 0.509 3.491 8 O -0.581 6.581 9 C -0.059 4.059 10 C 0.012 3.988 11 C -0.232 4.232 12 C -0.038 4.038 13 C -0.070 4.070 14 O 0.085 5.915 15 N -0.390 5.390 16 N -0.740 5.740 17 C -0.304 4.304 18 H 0.073 0.927 19 C -0.105 4.105 20 N -0.981 5.981 21 Si 1.119 2.881 22 H -0.302 1.302 23 H -0.275 1.275 24 H -0.283 1.283 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.413 0.587 33 H 0.154 0.846 34 H 0.119 0.881 35 H 0.205 0.795 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.357 0.643 40 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.497 5.917 -14.365 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.064 3.936 4 H 0.079 0.921 5 C -0.002 4.002 6 N -0.361 5.361 7 C 0.296 3.704 8 O -0.461 6.461 9 C -0.099 4.099 10 C -0.147 4.147 11 C -0.254 4.254 12 C -0.101 4.101 13 C -0.127 4.127 14 O 0.018 5.982 15 N -0.094 5.094 16 N -0.382 5.382 17 C -0.436 4.436 18 H 0.091 0.909 19 C -0.296 4.296 20 N -0.630 5.630 21 Si 0.946 3.054 22 H -0.229 1.229 23 H -0.201 1.201 24 H -0.210 1.210 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.249 0.751 33 H 0.172 0.828 34 H 0.137 0.863 35 H 0.222 0.778 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.189 0.811 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.715 5.209 -12.676 18.694 hybrid contribution 0.630 -0.433 -0.724 1.052 sum 13.345 4.776 -13.399 19.505 Atomic orbital electron populations 1.21680 0.95681 1.00612 1.01880 1.21999 0.96900 0.97374 1.00878 1.20625 0.90598 0.93151 0.89254 0.92098 1.21541 0.94411 0.83061 1.01179 1.45914 1.07062 1.10536 1.72592 1.20870 0.82113 0.91692 0.75752 1.90693 1.56777 1.47829 1.50845 1.20096 0.87636 0.94375 1.07811 1.23248 0.97428 0.97368 0.96635 1.22756 0.91288 1.06789 1.04517 1.25428 1.00153 0.92849 0.91704 1.20573 0.89264 1.02719 1.00152 1.84797 1.22913 1.48357 1.42181 1.73897 0.90473 1.21355 1.23653 1.42609 1.15908 1.67319 1.12367 1.20237 0.93147 1.29798 1.00391 0.90872 1.26888 1.08125 1.02048 0.92560 1.70999 1.08633 1.49957 1.33366 0.82706 0.71476 0.75893 0.75307 1.22894 1.20108 1.20994 0.92813 0.93361 0.93012 0.90626 0.94022 0.93851 0.90332 0.75055 0.82792 0.86268 0.77777 0.89247 0.87470 0.86929 0.81089 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.18 71.98 0.66 -4.21 16 2 C -0.13 -4.41 5.61 30.59 0.17 -4.23 16 3 C 0.17 6.24 2.59 44.99 0.12 6.35 16 4 H 0.06 2.17 8.08 -2.38 -0.02 2.15 16 5 C 0.12 4.19 5.23 86.38 0.45 4.64 16 6 N -0.71 -23.19 5.39 -463.06 -2.49 -25.68 16 7 C 0.51 17.20 7.82 87.66 0.69 17.89 16 8 O -0.58 -24.47 15.59 -3.05 -0.05 -24.51 16 9 C -0.06 -1.51 6.30 29.10 0.18 -1.33 16 10 C 0.01 0.34 6.10 43.58 0.27 0.60 16 11 C -0.23 -4.67 11.05 22.40 0.25 -4.43 16 12 C -0.04 -0.74 7.49 25.04 0.19 -0.55 16 13 C -0.07 -0.57 10.45 71.24 0.74 0.18 16 14 O 0.08 2.44 11.20 71.65 0.80 3.24 16 15 N -0.39 -13.42 11.46 -49.55 -0.57 -13.98 16 16 N -0.74 -33.59 4.50 -322.94 -1.45 -35.05 16 17 C -0.30 -15.36 7.75 84.03 0.65 -14.71 16 18 H 0.07 3.58 7.32 -2.91 -0.02 3.56 16 19 C -0.11 -5.74 5.50 84.86 0.47 -5.27 16 20 N -0.98 -59.24 13.70 21.65 0.30 -58.95 16 21 Si 1.12 49.80 29.92 68.60 2.05 51.86 16 22 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 23 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.05 2.03 5.99 -2.38 -0.01 2.01 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.41 13.14 8.14 -92.71 -0.75 12.38 16 33 H 0.15 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.21 2.41 8.06 -2.92 -0.02 2.39 16 36 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.36 17.82 6.63 -92.71 -0.61 17.21 16 40 H 0.24 14.71 6.77 -92.71 -0.63 14.08 16 Total: -1.00 -74.88 338.71 3.25 -71.63 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.17 Total: 36.52 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 4.83 Total: -5.07 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -4.22 Total: -133.66 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: 0.75 Total: -21.28 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.86 kcal Total: -74.88 3.25 -71.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753469069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.502 kcal (2) G-P(sol) polarization free energy of solvation -74.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds