Wall clock time and date at job start Tue Mar 31 2020 05:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47219 * 2 1 4 4 N 1.29936 * 125.37647 * 90.34785 * 3 2 1 5 5 C 1.36066 * 108.47679 * 180.16188 * 4 3 2 6 6 C 1.47425 * 126.44974 * 179.82341 * 5 4 3 7 7 O 1.21611 * 120.00111 * 179.69017 * 6 5 4 8 8 N 1.34776 * 119.99796 * 359.69081 * 6 5 4 9 9 C 1.46500 * 119.99923 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47226 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.47434 * 64.99688 * 10 9 8 12 12 C 1.52997 * 109.47114 * 184.99495 * 10 9 8 13 13 C 1.53007 * 109.47262 * 184.99769 * 12 10 9 14 14 N 1.46498 * 109.46963 * 304.99288 * 10 9 8 15 15 C 1.36943 * 119.99752 * 154.72381 * 14 10 9 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 10 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 10 18 18 N 1.31624 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47294 * 90.00155 * 19 17 15 21 21 H 1.48499 * 109.47218 * 210.00015 * 19 17 15 22 22 H 1.48496 * 109.47166 * 329.99846 * 19 17 15 23 23 C 1.36092 * 107.09924 * 359.56386 * 5 4 3 24 24 O 1.34039 * 125.38132 * 270.02221 * 3 2 1 25 25 H 1.09001 * 109.47394 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47035 * 300.00253 * 1 2 3 27 27 H 1.09002 * 109.46704 * 59.99717 * 1 2 3 28 28 H 1.08996 * 109.47035 * 239.99747 * 2 1 3 29 29 H 1.09002 * 109.46704 * 120.00283 * 2 1 3 30 30 H 0.96998 * 119.99957 * 359.97438 * 8 6 5 31 31 H 1.08995 * 109.47176 * 59.99567 * 9 8 6 32 32 H 1.09008 * 109.46559 * 299.99697 * 9 8 6 33 33 H 1.09000 * 109.47396 * 304.99878 * 12 10 9 34 34 H 1.09005 * 109.47103 * 64.99798 * 12 10 9 35 35 H 1.09000 * 109.46616 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.47004 * 300.00349 * 13 12 10 37 37 H 1.08997 * 109.46461 * 60.00164 * 13 12 10 38 38 H 0.97001 * 120.00384 * 335.00737 * 14 10 9 39 39 H 0.96999 * 119.99739 * 180.02562 * 18 17 15 40 40 H 1.07999 * 126.52171 * 180.28458 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2892 2.1279 1.0594 5 6 2.7175 3.3573 0.6639 6 6 3.1121 4.4723 1.5440 7 8 3.4842 5.5250 1.0620 8 7 3.0606 4.3249 2.8826 9 6 3.4523 5.4331 3.7572 10 6 3.3029 5.0065 5.2189 11 1 4.0076 4.2040 5.4371 12 6 3.5917 6.2007 6.1307 13 6 3.5649 5.7455 7.5912 14 7 1.9363 4.5333 5.4523 15 6 1.6821 3.6471 6.4649 16 1 2.4885 3.3006 7.0943 17 6 0.3881 3.1942 6.6824 18 7 -0.5945 3.6162 5.9150 19 14 0.0413 1.9860 8.0642 20 1 -0.2769 2.7335 9.3072 21 1 -1.1126 1.1279 7.6935 22 1 1.2377 1.1359 8.2903 23 6 2.7185 3.3620 -0.6970 24 8 2.2907 2.1526 -1.0928 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.7635 3.4853 3.2670 31 1 2.8123 6.2935 3.5622 32 1 4.4907 5.7008 3.5615 33 1 4.5749 6.6083 5.8952 34 1 2.8335 6.9682 5.9753 35 1 3.7702 6.5964 8.2407 36 1 2.5818 5.3379 7.8267 37 1 4.3231 4.9780 7.7465 38 1 1.2120 4.8444 4.8870 39 1 -1.4988 3.3000 6.0673 40 1 3.0087 4.1824 -1.3367 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753472638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:08 Heat of formation + Delta-G solvation = -18.885211 kcal Electronic energy + Delta-G solvation = -22040.518332 eV Core-core repulsion = 18663.917766 eV Total energy + Delta-G solvation = -3376.600566 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.39884 -39.19361 -36.66897 -35.01364 -33.98706 -33.60041 -32.31381 -29.78871 -29.50868 -27.93629 -24.69149 -24.32607 -23.27457 -22.21755 -21.06564 -20.21502 -19.77443 -18.02659 -17.14664 -16.82283 -16.31885 -15.63052 -15.26647 -14.85221 -14.60564 -14.44812 -13.96811 -13.73804 -13.37216 -13.15020 -12.94170 -12.82087 -12.62245 -12.13966 -11.93028 -11.44764 -11.35129 -11.16368 -10.93030 -10.86931 -10.72527 -10.71023 -10.41649 -10.17660 -10.01595 -9.86796 -9.50403 -9.02938 -8.91811 -8.58344 -6.99124 -5.76794 -3.05905 1.16368 2.10233 2.55741 3.41437 3.43669 3.48320 3.49402 3.56237 3.91328 4.57802 4.72132 4.89220 4.97495 5.03801 5.20821 5.43019 5.47985 5.55778 5.58294 5.59300 5.64251 5.81268 5.95159 5.97172 5.98645 6.01477 6.10907 6.20324 6.44889 6.56551 6.60067 6.62286 6.88904 7.04442 7.26464 7.51123 7.70239 7.98849 8.39950 8.51130 9.51997 10.06945 10.42771 11.45085 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.005404 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.075566 B = 5180.045571 C = 6984.930578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.025 4.025 3 C 0.194 3.806 4 N -0.448 5.448 5 C -0.062 4.062 6 C 0.596 3.404 7 O -0.554 6.554 8 N -0.690 5.690 9 C 0.113 3.887 10 C 0.163 3.837 11 H 0.054 0.946 12 C -0.133 4.133 13 C -0.146 4.146 14 N -0.720 5.720 15 C -0.236 4.236 16 H 0.073 0.927 17 C -0.011 4.011 18 N -0.928 5.928 19 Si 0.903 3.097 20 H -0.291 1.291 21 H -0.293 1.293 22 H -0.282 1.282 23 C 0.001 3.999 24 O -0.200 6.200 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.420 0.580 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.032 0.968 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.385 0.615 39 H 0.254 0.746 40 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.205 -4.302 -12.152 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.063 4.063 3 C -0.015 4.015 4 N -0.178 5.178 5 C -0.182 4.182 6 C 0.380 3.620 7 O -0.433 6.433 8 N -0.341 5.341 9 C -0.011 4.011 10 C 0.052 3.948 11 H 0.072 0.928 12 C -0.174 4.174 13 C -0.203 4.203 14 N -0.363 5.363 15 C -0.367 4.367 16 H 0.091 0.909 17 C -0.207 4.207 18 N -0.576 5.576 19 Si 0.734 3.266 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.073 4.073 24 O -0.086 6.086 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.127 0.873 30 H 0.258 0.742 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.395 -3.920 -11.698 13.896 hybrid contribution -0.583 -0.508 0.149 0.788 sum 5.812 -4.428 -11.549 13.666 Atomic orbital electron populations 1.21807 0.92871 1.03062 1.03350 1.20105 0.97091 0.83899 1.05224 1.26393 0.99816 0.97014 0.78270 1.70872 1.14734 1.02506 1.29641 1.21901 1.08979 0.94355 0.93000 1.16760 0.77952 0.84966 0.82277 1.90776 1.49441 1.27373 1.75745 1.45823 1.64864 1.18682 1.04704 1.21761 0.99676 0.89162 0.90538 1.20564 0.89692 0.94881 0.89615 0.92798 1.22066 0.99394 0.99085 0.96850 1.21765 1.03878 0.99347 0.95355 1.42439 1.02610 1.52933 1.38279 1.19190 0.92957 1.17226 1.07320 0.90939 1.24725 0.95931 1.00681 0.99361 1.69670 0.99787 1.47704 1.40460 0.86261 0.77475 0.80926 0.81944 1.21831 1.21900 1.20790 1.25205 0.99764 0.86616 0.95733 1.84355 1.63600 1.22592 1.38071 0.90865 0.91135 0.92266 0.88961 0.87300 0.74191 0.91561 0.91613 0.93831 0.92497 0.94881 0.89666 0.94112 0.78087 0.93588 0.75488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 37.16 0.37 -1.01 16 2 C -0.03 -0.23 6.56 -27.88 -0.18 -0.41 16 3 C 0.19 2.58 7.56 -13.08 -0.10 2.48 16 4 N -0.45 -7.39 11.06 -7.66 -0.08 -7.48 16 5 C -0.06 -1.02 6.99 -83.02 -0.58 -1.60 16 6 C 0.60 10.95 7.81 -12.52 -0.10 10.86 16 7 O -0.55 -10.96 16.89 5.27 0.09 -10.87 16 8 N -0.69 -12.82 5.39 -61.38 -0.33 -13.15 16 9 C 0.11 2.01 5.23 -4.04 -0.02 1.99 16 10 C 0.16 3.11 2.59 -67.93 -0.18 2.94 16 11 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 12 C -0.13 -2.33 5.61 -26.73 -0.15 -2.48 16 13 C -0.15 -2.64 9.18 37.16 0.34 -2.29 16 14 N -0.72 -16.94 4.50 -53.43 -0.24 -17.18 16 15 C -0.24 -6.12 7.76 -15.06 -0.12 -6.24 16 16 H 0.07 1.84 7.33 -52.49 -0.38 1.45 16 17 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 18 N -0.93 -27.23 13.06 55.49 0.72 -26.51 16 19 Si 0.90 21.83 29.55 -169.99 -5.02 16.81 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.00 0.01 11.95 29.96 0.36 0.36 16 24 O -0.20 -2.53 10.72 6.56 0.07 -2.46 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.42 8.34 7.87 -40.82 -0.32 8.02 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 1.81 6.01 -51.93 -0.31 1.50 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.39 9.96 7.80 -40.82 -0.32 9.65 16 39 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.23 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -31.18 342.16 -6.06 -37.24 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.96 Total: 14.25 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -0.45 Total: 4.19 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 0.07 Total: -64.32 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.16 Total: -13.32 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.18 -6.06 -37.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753472638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.352 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds