Wall clock time and date at job start Tue Mar 31 2020 05:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 119.99757 * 2 1 4 4 C 1.53001 * 109.47043 * 90.00039 * 3 2 1 5 5 C 1.53004 * 109.47008 * 300.00206 * 4 3 2 6 6 C 1.52992 * 109.47005 * 59.99992 * 4 3 2 7 7 C 1.52999 * 109.47183 * 180.02562 * 4 3 2 8 8 N 1.46495 * 109.47300 * 179.97438 * 7 4 3 9 9 C 1.36931 * 120.00036 * 179.97438 * 8 7 4 10 10 H 1.08001 * 120.00241 * 0.02562 * 9 8 7 11 11 C 1.38817 * 120.00020 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00090 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00018 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47135 * 60.00310 * 13 11 9 15 15 H 1.48498 * 109.47194 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47366 * 300.00152 * 13 11 9 17 17 C 1.34773 * 120.00407 * 180.02562 * 2 1 3 18 18 O 1.21604 * 120.00078 * 185.17530 * 17 2 1 19 19 C 1.47422 * 119.99875 * 5.16384 * 17 2 1 20 20 C 1.36092 * 126.44736 * 186.28784 * 19 17 2 21 21 O 1.34262 * 106.94698 * 179.97438 * 20 19 17 22 22 C 1.34042 * 108.22854 * 359.97438 * 21 20 19 23 23 N 1.29939 * 109.24382 * 359.74989 * 22 21 20 24 24 H 1.09007 * 109.46986 * 95.28281 * 1 2 3 25 25 H 1.09006 * 109.46767 * 215.27617 * 1 2 3 26 26 H 1.09000 * 109.47437 * 335.27753 * 1 2 3 27 27 H 1.08994 * 109.47363 * 210.00072 * 3 2 1 28 28 H 1.09001 * 109.46902 * 330.00391 * 3 2 1 29 29 H 1.08993 * 109.47410 * 59.99802 * 5 4 3 30 30 H 1.09003 * 109.47152 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.47053 * 299.99536 * 5 4 3 32 32 H 1.09002 * 109.47243 * 59.99958 * 6 4 3 33 33 H 1.08998 * 109.47263 * 179.97438 * 6 4 3 34 34 H 1.09006 * 109.47694 * 299.99925 * 6 4 3 35 35 H 1.09002 * 109.46748 * 299.99848 * 7 4 3 36 36 H 1.09004 * 109.47402 * 59.99271 * 7 4 3 37 37 H 0.97003 * 119.99758 * 0.02562 * 8 7 4 38 38 H 0.96997 * 120.00046 * 179.97438 * 12 11 9 39 39 H 1.07994 * 126.52738 * 0.02562 * 20 19 17 40 40 H 1.08004 * 125.38430 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 6 1.1155 1.8933 2.1638 6 6 3.2793 0.6442 2.1637 7 6 3.2169 3.0358 1.4425 8 7 3.4605 3.4590 2.8237 9 6 4.1335 4.6250 3.0739 10 1 4.4843 5.2329 2.2531 11 6 4.3638 5.0263 4.3827 12 7 3.9358 4.2858 5.3831 13 14 5.2825 6.6165 4.7240 14 1 4.5408 7.7551 4.1251 15 1 5.3973 6.8168 6.1910 16 1 6.6403 6.5417 4.1275 17 6 2.1390 -1.1671 -0.0005 18 8 3.3513 -1.1692 0.0945 19 6 1.4064 -2.4412 -0.1160 20 6 1.9358 -3.6906 -0.0112 21 8 0.9256 -4.5590 -0.1786 22 6 -0.1996 -3.8592 -0.3812 23 7 0.0726 -2.5893 -0.3407 24 1 -0.3633 -0.0946 -1.0234 25 1 -0.3633 -0.8390 0.5935 26 1 -0.3634 0.9335 0.4298 27 1 3.1499 1.1386 -0.5138 28 1 1.6083 2.0284 -0.5138 29 1 0.5706 0.9494 2.1637 30 1 1.2972 2.2084 3.1913 31 1 0.5264 2.6530 1.6500 32 1 4.2318 0.5139 1.6498 33 1 3.4614 0.9590 3.1912 34 1 2.7344 -0.2999 2.1637 35 1 4.1693 2.9059 0.9286 36 1 2.6274 3.7953 0.9287 37 1 3.1457 2.9129 3.5610 38 1 4.0971 4.5660 6.2976 39 1 2.9711 -3.9367 0.1725 40 1 -1.1788 -4.2838 -0.5471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755277473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:35 Heat of formation + Delta-G solvation = 13.028597 kcal Electronic energy + Delta-G solvation = -22554.973497 eV Core-core repulsion = 19179.756817 eV Total energy + Delta-G solvation = -3375.216680 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.70685 -40.02870 -37.26397 -35.42988 -34.72716 -32.95358 -30.68875 -30.09514 -27.79673 -26.83022 -25.94445 -25.45224 -23.60662 -23.04607 -22.18507 -20.09691 -18.34190 -17.91567 -17.21861 -16.98593 -16.70531 -16.10147 -15.50362 -15.23512 -14.50307 -14.20858 -13.85467 -13.70971 -13.55305 -13.10785 -12.97099 -12.72203 -12.49743 -12.24891 -12.03250 -11.60292 -11.18921 -11.06866 -10.96818 -10.81945 -10.75054 -10.56458 -10.28526 -10.18961 -10.03685 -9.74542 -9.60705 -9.44650 -8.79052 -8.45914 -6.81994 -5.69040 -2.96313 0.88866 1.80568 2.39871 2.97218 3.22828 3.48995 3.52988 3.54226 3.74675 4.48354 4.59430 4.66524 5.19007 5.21768 5.24180 5.31052 5.34787 5.48790 5.59233 5.63582 5.69846 5.80275 5.98857 6.03201 6.04097 6.20532 6.25030 6.38259 6.52125 6.62136 6.69680 6.81473 6.85941 7.02232 7.06754 7.12854 7.40976 7.76603 8.13754 8.50589 9.61445 10.21358 10.56239 11.54110 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.040757 B = 0.003424 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.835851 B = 8176.793167 C = 8306.369486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.591 5.591 3 C 0.128 3.872 4 C -0.086 4.086 5 C -0.136 4.136 6 C -0.122 4.122 7 C 0.166 3.834 8 N -0.727 5.727 9 C -0.236 4.236 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.287 1.287 17 C 0.594 3.406 18 O -0.527 6.527 19 C -0.067 4.067 20 C 0.013 3.987 21 O -0.201 6.201 22 C 0.171 3.829 23 N -0.461 5.461 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.019 0.981 36 H 0.017 0.983 37 H 0.385 0.615 38 H 0.254 0.746 39 H 0.230 0.770 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.968 -17.559 -13.289 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.322 5.322 3 C 0.005 3.995 4 C -0.087 4.087 5 C -0.193 4.193 6 C -0.179 4.179 7 C 0.037 3.963 8 N -0.373 5.373 9 C -0.367 4.367 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.214 1.214 15 H -0.218 1.218 16 H -0.214 1.214 17 C 0.381 3.619 18 O -0.404 6.404 19 C -0.187 4.187 20 C -0.061 4.061 21 O -0.086 6.086 22 C -0.057 4.057 23 N -0.191 5.191 24 H 0.073 0.927 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.220 0.780 38 H 0.064 0.936 39 H 0.246 0.754 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -10.692 -16.912 -13.331 24.043 hybrid contribution 0.645 0.214 0.583 0.896 sum -10.046 -16.698 -12.748 23.287 Atomic orbital electron populations 1.22083 0.78507 1.03254 1.02161 1.47558 1.07603 1.05509 1.71546 1.21633 0.97227 0.83265 0.97338 1.21115 0.96484 0.97005 0.94112 1.21882 0.95767 0.99922 1.01749 1.21721 0.99276 0.96189 1.00728 1.20582 0.95671 0.91177 0.88840 1.42380 1.68153 1.25725 1.01005 1.19207 1.27653 0.98168 0.91716 0.91323 1.24716 1.01850 0.98969 0.95582 1.69651 1.51707 1.38947 0.98115 0.86266 0.79722 0.83432 0.76766 1.21374 1.21779 1.21351 1.16761 0.86086 0.81859 0.77224 1.90858 1.12744 1.86569 1.50207 1.21896 0.90247 0.95571 1.10991 1.25333 0.93798 0.87044 0.99896 1.84436 1.17401 1.39452 1.67326 1.28226 0.91711 0.85696 1.00103 1.71022 1.13416 1.17842 1.16857 0.92734 0.89745 0.91018 0.89812 0.90344 0.93595 0.91495 0.93231 0.92433 0.92280 0.94413 0.96276 0.96489 0.78001 0.93574 0.75383 0.73143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 8.03 59.85 0.48 1.39 16 2 N -0.59 -7.99 2.40 -182.84 -0.44 -8.43 16 3 C 0.13 1.87 4.57 -4.04 -0.02 1.85 16 4 C -0.09 -1.49 0.60 -154.51 -0.09 -1.59 16 5 C -0.14 -2.26 7.07 37.16 0.26 -2.00 16 6 C -0.12 -2.31 6.90 37.15 0.26 -2.05 16 7 C 0.17 3.48 5.15 -4.04 -0.02 3.46 16 8 N -0.73 -18.93 5.00 -59.91 -0.30 -19.23 16 9 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 12 N -0.94 -28.88 13.06 55.49 0.72 -28.15 16 13 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 17 C 0.59 8.60 6.23 -12.52 -0.08 8.52 16 18 O -0.53 -8.99 14.28 5.27 0.08 -8.92 16 19 C -0.07 -0.79 6.60 -83.02 -0.55 -1.34 16 20 C 0.01 0.12 11.95 29.96 0.36 0.48 16 21 O -0.20 -1.58 10.73 6.52 0.07 -1.51 16 22 C 0.17 1.12 13.19 51.96 0.69 1.81 16 23 N -0.46 -4.57 8.10 -11.48 -0.09 -4.66 16 24 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 25 H 0.08 0.94 5.89 -51.93 -0.31 0.63 16 26 H 0.07 0.75 6.29 -51.93 -0.33 0.43 16 27 H 0.08 1.30 7.50 -51.93 -0.39 0.91 16 28 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 29 H 0.05 0.68 6.07 -51.93 -0.32 0.36 16 30 H 0.07 1.31 6.86 -51.93 -0.36 0.95 16 31 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 33 H 0.06 1.25 6.86 -51.93 -0.36 0.90 16 34 H 0.04 0.67 6.06 -51.93 -0.31 0.36 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 10.50 5.36 -40.82 -0.22 10.28 16 38 H 0.25 7.61 8.31 -40.82 -0.34 7.28 16 39 H 0.23 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.25 0.33 8.06 -52.48 -0.42 -0.09 16 LS Contribution 321.55 15.07 4.85 4.85 Total: -1.00 -34.57 321.55 -4.58 -39.14 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.48 Total: 5.95 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 1.04 Total: 3.03 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.11 Total: -60.47 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.15 Total: -10.42 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.57 -4.58 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755277473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.173 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds