Wall clock time and date at job start Tue Mar 31 2020 05:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47219 * 2 1 4 4 C 1.53001 * 109.46958 * 119.99979 * 2 1 3 5 5 N 1.46503 * 109.47184 * 294.99882 * 4 2 1 6 6 C 1.38851 * 120.00032 * 180.02562 * 5 4 2 7 7 C 1.39567 * 119.84244 * 359.72727 * 6 5 4 8 8 C 1.36339 * 120.16215 * 179.71586 * 7 6 5 9 9 C 1.40893 * 119.83471 * 0.55166 * 8 7 6 10 10 C 1.41130 * 120.15751 * 179.69535 * 9 8 7 11 11 H 1.08001 * 120.00491 * 204.63330 * 10 9 8 12 12 C 1.39871 * 119.99831 * 24.63532 * 10 9 8 13 13 N 1.30901 * 120.00185 * 17.95342 * 12 10 9 14 14 Si 1.86799 * 119.99820 * 197.95293 * 12 10 9 15 15 H 1.48505 * 109.47154 * 60.00106 * 14 12 10 16 16 H 1.48501 * 109.46832 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47433 * 299.99959 * 14 12 10 18 18 C 1.40886 * 119.68693 * 359.72657 * 9 8 7 19 19 C 1.36336 * 119.83839 * 359.97438 * 18 9 8 20 20 C 1.50699 * 109.47092 * 239.99885 * 2 1 3 21 21 C 1.38229 * 120.00075 * 119.99957 * 20 2 1 22 22 C 1.38239 * 120.00014 * 179.97438 * 21 20 2 23 23 C 1.38239 * 119.99862 * 359.97438 * 22 21 20 24 24 C 1.38230 * 119.99825 * 359.97438 * 23 22 21 25 25 C 1.38233 * 120.00584 * 0.07319 * 24 23 22 26 26 H 1.09001 * 109.46919 * 299.99867 * 1 2 3 27 27 H 1.09002 * 109.46979 * 59.99826 * 1 2 3 28 28 H 1.09002 * 109.47219 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47273 * 54.99795 * 4 2 1 30 30 H 1.09001 * 109.46735 * 174.99878 * 4 2 1 31 31 H 0.96997 * 119.99725 * 359.97438 * 5 4 2 32 32 H 1.08001 * 119.91887 * 359.97438 * 7 6 5 33 33 H 1.08002 * 120.08835 * 180.27596 * 8 7 6 34 34 H 0.96991 * 120.00201 * 180.02562 * 13 12 10 35 35 H 1.08003 * 120.08373 * 179.97438 * 18 9 8 36 36 H 1.08002 * 119.92115 * 179.97438 * 19 18 9 37 37 H 1.07997 * 120.00090 * 359.97438 * 21 20 2 38 38 H 1.07994 * 119.99948 * 180.02562 * 22 21 20 39 39 H 1.08003 * 119.99583 * 179.72364 * 23 22 21 40 40 H 1.08001 * 119.99925 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.00126 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0354 2.4424 6 6 2.0068 -0.4266 3.7030 7 6 2.7273 -1.6152 3.8298 8 6 3.0837 -2.0718 5.0640 9 6 2.7128 -1.3467 6.2137 10 6 3.0725 -1.8165 7.4950 11 1 2.4923 -1.5274 8.3588 12 6 4.1806 -2.6566 7.6461 13 7 5.0804 -2.7300 6.6982 14 14 4.3764 -3.6737 9.2006 15 1 3.2128 -4.5850 9.3457 16 1 5.6240 -4.4745 9.1143 17 1 4.4477 -2.7707 10.3774 18 6 1.9804 -0.1508 6.0783 19 6 1.6362 0.2970 4.8374 20 6 2.0323 -0.7104 -1.2304 21 6 2.8270 -0.0387 -2.1404 22 6 3.2883 -0.6905 -3.2688 23 6 2.9551 -2.0143 -3.4869 24 6 2.1613 -2.6863 -2.5764 25 6 1.6993 -2.0343 -1.4485 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 1.1489 0.8594 2.3517 32 1 3.0069 -2.1724 2.9479 33 1 3.6451 -2.9894 5.1606 34 1 5.8486 -3.3128 6.8029 35 1 1.6924 0.4099 6.9552 36 1 1.0745 1.2134 4.7321 37 1 3.0876 0.9954 -1.9697 38 1 3.9095 -0.1658 -3.9795 39 1 3.3118 -2.5223 -4.3708 40 1 1.9007 -3.7205 -2.7471 41 1 1.0787 -2.5593 -0.7374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071204.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:14 Heat of formation + Delta-G solvation = 34.447744 kcal Electronic energy + Delta-G solvation = -20443.786535 eV Core-core repulsion = 17480.347922 eV Total energy + Delta-G solvation = -2963.438613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.65132 -37.95783 -36.08764 -33.93664 -32.38747 -31.00811 -29.61457 -29.42764 -28.39521 -26.09282 -24.13613 -23.16033 -22.44625 -21.17317 -20.20641 -19.56144 -17.17392 -17.07146 -16.11110 -15.61336 -15.04579 -14.88383 -14.71372 -14.17870 -13.82697 -13.65901 -13.42867 -13.12595 -12.79318 -12.53649 -12.47220 -12.14705 -11.98072 -11.76086 -11.54160 -11.29850 -11.05460 -10.98481 -10.92462 -10.71728 -10.62982 -10.41013 -9.68008 -9.25193 -9.18338 -9.01202 -8.78510 -8.49094 -7.46012 -6.61201 -6.35375 -4.00258 1.26117 1.30884 2.95723 3.13263 3.16074 3.19272 3.39045 3.68356 4.07613 4.27017 4.68136 4.79010 4.80246 4.90481 4.99914 5.07002 5.16545 5.35631 5.40481 5.46423 5.77305 5.80277 5.84875 5.91991 5.96065 6.06509 6.17900 6.20856 6.30674 6.36675 6.38411 6.41942 6.59786 6.90636 6.97000 6.97530 7.23290 7.38953 7.58621 7.72297 7.87754 8.18243 8.32408 8.52638 8.73993 8.83355 9.09024 9.18608 10.40424 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025085 B = 0.003206 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.921173 B = 8731.824624 C = 9462.854244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 H 0.080 0.920 4 C 0.149 3.851 5 N -0.761 5.761 6 C 0.093 3.907 7 C -0.164 4.164 8 C -0.124 4.124 9 C 0.074 3.926 10 C -0.468 4.468 11 H 0.072 0.928 12 C 0.075 3.925 13 N -0.808 5.808 14 Si 0.903 3.097 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.268 1.268 18 C -0.187 4.187 19 C -0.159 4.159 20 C -0.069 4.069 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.112 4.112 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.383 0.617 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.276 0.724 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.724 2.081 -17.159 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.082 4.082 3 H 0.099 0.901 4 C 0.024 3.976 5 N -0.397 5.397 6 C -0.004 4.004 7 C -0.186 4.186 8 C -0.144 4.144 9 C 0.072 3.928 10 C -0.499 4.499 11 H 0.090 0.910 12 C -0.140 4.140 13 N -0.435 5.435 14 Si 0.728 3.272 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.208 4.208 19 C -0.181 4.181 20 C -0.069 4.069 21 C -0.135 4.135 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.130 4.130 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.216 0.784 32 H 0.105 0.895 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.401 1.811 -17.290 17.933 hybrid contribution 0.149 -0.186 0.614 0.658 sum -4.252 1.626 -16.676 17.286 Atomic orbital electron populations 1.21820 0.93937 1.02349 1.01652 1.20368 0.96404 0.99459 0.91998 0.90144 1.21009 0.98528 0.94609 0.83495 1.43854 1.65564 1.28011 1.02291 1.17338 1.02831 0.96476 0.83787 1.20098 1.04397 0.96857 0.97208 1.20933 1.02045 1.00418 0.91031 1.17485 0.91681 0.90294 0.93388 1.19332 1.10470 1.26055 0.94067 0.91010 1.25791 0.94744 0.95874 0.97625 1.69846 1.08078 1.31990 1.33590 0.86470 0.78097 0.80285 0.82355 1.19111 1.20600 1.19289 1.20540 1.07526 0.97897 0.94806 1.19795 1.06240 0.99851 0.92244 1.19793 0.97182 0.94272 0.95670 1.21087 0.97957 0.99967 0.94446 1.21118 1.00108 0.95002 0.97643 1.21126 0.99024 0.94917 0.99520 1.21149 0.98073 0.99841 0.94636 1.21077 1.00097 0.94296 0.97520 0.91897 0.92860 0.92354 0.93374 0.93460 0.78420 0.89481 0.86431 0.91294 0.89094 0.89660 0.86157 0.86255 0.86354 0.86154 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.88 37.16 0.33 -1.17 16 2 C -0.06 -0.75 2.60 -91.77 -0.24 -0.99 16 3 H 0.08 0.91 7.88 -51.93 -0.41 0.50 16 4 C 0.15 2.26 4.02 -4.04 -0.02 2.25 16 5 N -0.76 -13.24 5.43 -58.50 -0.32 -13.56 16 6 C 0.09 2.04 6.67 -83.69 -0.56 1.49 16 7 C -0.16 -3.92 9.23 -39.77 -0.37 -4.28 16 8 C -0.12 -3.32 8.64 -39.26 -0.34 -3.66 16 9 C 0.07 2.04 5.57 -106.79 -0.60 1.45 16 10 C -0.47 -12.89 9.03 -37.87 -0.34 -13.23 16 11 H 0.07 1.90 7.91 -52.49 -0.41 1.49 16 12 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 13 N -0.81 -21.75 10.96 55.54 0.61 -21.14 16 14 Si 0.90 19.45 29.60 -169.99 -5.03 14.42 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 C -0.19 -4.71 9.74 -39.27 -0.38 -5.09 16 19 C -0.16 -3.62 9.82 -39.77 -0.39 -4.01 16 20 C -0.07 -0.80 4.78 -104.62 -0.50 -1.30 16 21 C -0.12 -1.25 9.67 -39.58 -0.38 -1.63 16 22 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.22 10.05 -39.59 -0.40 -1.61 16 25 C -0.11 -1.27 8.76 -39.58 -0.35 -1.61 16 26 H 0.06 0.69 7.18 -51.93 -0.37 0.31 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.63 7.39 -51.93 -0.38 0.25 16 29 H 0.05 0.76 7.34 -51.93 -0.38 0.38 16 30 H 0.05 0.79 7.94 -51.93 -0.41 0.38 16 31 H 0.38 5.88 7.65 -40.82 -0.31 5.57 16 32 H 0.09 1.92 6.68 -52.49 -0.35 1.57 16 33 H 0.12 3.25 6.16 -52.49 -0.32 2.93 16 34 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 35 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.12 1.12 7.95 -52.49 -0.42 0.71 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.12 1.32 7.16 -52.49 -0.38 0.95 16 LS Contribution 337.96 15.07 5.09 5.09 Total: -1.00 -28.99 337.96 -10.88 -39.87 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.82 Total: 10.06 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: -5.41 Total: -34.75 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.29 Total: -34.70 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.99 -10.88 -39.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071204.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.320 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds