Wall clock time and date at job start Tue Mar 31 2020 05:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47219 * 2 1 4 4 C 1.53001 * 109.46958 * 119.99979 * 2 1 3 5 5 N 1.46503 * 109.47184 * 294.99882 * 4 2 1 6 6 C 1.38851 * 120.00032 * 180.02562 * 5 4 2 7 7 C 1.39567 * 119.84244 * 359.72727 * 6 5 4 8 8 C 1.36339 * 120.16215 * 179.71586 * 7 6 5 9 9 C 1.40893 * 119.83471 * 0.55166 * 8 7 6 10 10 C 1.41130 * 120.15751 * 179.69535 * 9 8 7 11 11 H 1.08001 * 120.00491 * 204.63330 * 10 9 8 12 12 C 1.39871 * 119.99831 * 24.63532 * 10 9 8 13 13 N 1.30901 * 120.00185 * 17.95342 * 12 10 9 14 14 Si 1.86799 * 119.99820 * 197.95293 * 12 10 9 15 15 H 1.48505 * 109.47154 * 60.00106 * 14 12 10 16 16 H 1.48501 * 109.46832 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47433 * 299.99959 * 14 12 10 18 18 C 1.40886 * 119.68693 * 359.72657 * 9 8 7 19 19 C 1.36336 * 119.83839 * 359.97438 * 18 9 8 20 20 C 1.50699 * 109.47092 * 239.99885 * 2 1 3 21 21 C 1.38229 * 120.00075 * 119.99957 * 20 2 1 22 22 C 1.38239 * 120.00014 * 179.97438 * 21 20 2 23 23 C 1.38239 * 119.99862 * 359.97438 * 22 21 20 24 24 C 1.38230 * 119.99825 * 359.97438 * 23 22 21 25 25 C 1.38233 * 120.00584 * 0.07319 * 24 23 22 26 26 H 1.09001 * 109.46919 * 299.99867 * 1 2 3 27 27 H 1.09002 * 109.46979 * 59.99826 * 1 2 3 28 28 H 1.09002 * 109.47219 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47273 * 54.99795 * 4 2 1 30 30 H 1.09001 * 109.46735 * 174.99878 * 4 2 1 31 31 H 0.96997 * 119.99725 * 359.97438 * 5 4 2 32 32 H 1.08001 * 119.91887 * 359.97438 * 7 6 5 33 33 H 1.08002 * 120.08835 * 180.27596 * 8 7 6 34 34 H 0.96991 * 120.00201 * 180.02562 * 13 12 10 35 35 H 1.08003 * 120.08373 * 179.97438 * 18 9 8 36 36 H 1.08002 * 119.92115 * 179.97438 * 19 18 9 37 37 H 1.07997 * 120.00090 * 359.97438 * 21 20 2 38 38 H 1.07994 * 119.99948 * 180.02562 * 22 21 20 39 39 H 1.08003 * 119.99583 * 179.72364 * 23 22 21 40 40 H 1.08001 * 119.99925 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.00126 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0354 2.4424 6 6 2.0068 -0.4266 3.7030 7 6 2.7273 -1.6152 3.8298 8 6 3.0837 -2.0718 5.0640 9 6 2.7128 -1.3467 6.2137 10 6 3.0725 -1.8165 7.4950 11 1 2.4923 -1.5274 8.3588 12 6 4.1806 -2.6566 7.6461 13 7 5.0804 -2.7300 6.6982 14 14 4.3764 -3.6737 9.2006 15 1 3.2128 -4.5850 9.3457 16 1 5.6240 -4.4745 9.1143 17 1 4.4477 -2.7707 10.3774 18 6 1.9804 -0.1508 6.0783 19 6 1.6362 0.2970 4.8374 20 6 2.0323 -0.7104 -1.2304 21 6 2.8270 -0.0387 -2.1404 22 6 3.2883 -0.6905 -3.2688 23 6 2.9551 -2.0143 -3.4869 24 6 2.1613 -2.6863 -2.5764 25 6 1.6993 -2.0343 -1.4485 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 1.1489 0.8594 2.3517 32 1 3.0069 -2.1724 2.9479 33 1 3.6451 -2.9894 5.1606 34 1 5.8486 -3.3128 6.8029 35 1 1.6924 0.4099 6.9552 36 1 1.0745 1.2134 4.7321 37 1 3.0876 0.9954 -1.9697 38 1 3.9095 -0.1658 -3.9795 39 1 3.3118 -2.5223 -4.3708 40 1 1.9007 -3.7205 -2.7471 41 1 1.0787 -2.5593 -0.7374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037071204.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:14 Heat of formation + Delta-G solvation = 21.270851 kcal Electronic energy + Delta-G solvation = -20444.357928 eV Core-core repulsion = 17480.347922 eV Total energy + Delta-G solvation = -2964.010006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.54013 -39.67003 -37.42702 -35.56927 -33.96922 -31.77724 -31.35140 -30.85910 -29.81469 -27.48289 -25.79504 -24.19313 -23.33513 -22.92485 -21.80973 -20.78501 -19.14552 -18.15649 -17.45811 -16.82503 -16.62334 -16.08520 -15.87425 -15.59930 -15.22492 -14.75034 -14.56171 -14.33397 -14.18237 -14.01329 -13.71560 -13.67578 -13.52021 -13.08738 -12.89828 -12.72909 -12.68304 -12.34619 -12.20054 -12.10438 -11.69745 -11.57594 -11.57067 -11.16668 -11.04220 -10.28878 -9.79361 -9.59944 -9.40419 -8.54482 -8.16188 -6.00282 0.46170 0.52612 1.11670 1.19238 1.40124 1.51228 1.60434 2.27652 2.80964 2.85191 2.98204 3.78344 3.84650 3.86020 4.12018 4.17767 4.21690 4.31525 4.40760 4.47878 4.51619 4.63925 4.67603 4.75891 4.88032 4.96932 5.03517 5.10771 5.13701 5.18290 5.20588 5.28536 5.32203 5.46143 5.60605 5.65114 5.68908 5.75611 5.80978 5.96929 6.14776 6.19254 6.39261 6.66827 6.86888 7.08790 7.15678 7.33396 8.48728 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025085 B = 0.003206 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.921173 B = 8731.824624 C = 9462.854244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 H 0.089 0.911 4 C 0.150 3.850 5 N -0.748 5.748 6 C 0.112 3.888 7 C -0.176 4.176 8 C -0.144 4.144 9 C 0.035 3.965 10 C -0.507 4.507 11 H 0.069 0.931 12 C 0.031 3.969 13 N -0.842 5.842 14 Si 0.977 3.023 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.261 1.261 18 C -0.196 4.196 19 C -0.163 4.163 20 C -0.085 4.085 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.128 4.128 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.031 0.969 31 H 0.398 0.602 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.282 0.718 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.204 2.728 -18.677 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.069 4.069 3 H 0.107 0.893 4 C 0.025 3.975 5 N -0.384 5.384 6 C 0.012 3.988 7 C -0.198 4.198 8 C -0.164 4.164 9 C 0.033 3.967 10 C -0.538 4.538 11 H 0.087 0.913 12 C -0.181 4.181 13 N -0.470 5.470 14 Si 0.798 3.202 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.186 1.186 18 C -0.216 4.216 19 C -0.186 4.186 20 C -0.085 4.085 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.146 4.146 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.233 0.767 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.138 0.862 37 H 0.150 0.850 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.154 0.846 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.904 2.489 -18.849 19.635 hybrid contribution 0.250 -0.309 0.875 0.961 sum -4.654 2.180 -17.975 18.695 Atomic orbital electron populations 1.21795 0.92998 1.02328 1.02301 1.20231 0.97061 0.99323 0.90305 0.89275 1.21076 0.97614 0.94721 0.84091 1.43868 1.64692 1.28474 1.01319 1.17445 1.00528 0.95172 0.85644 1.20226 1.04959 0.97953 0.96680 1.20850 1.03141 1.00271 0.92181 1.17813 0.93413 0.91706 0.93809 1.19577 1.11682 1.28297 0.94246 0.91310 1.26630 0.93865 0.96432 1.01145 1.69918 1.08644 1.32789 1.35672 0.85341 0.78302 0.78480 0.78030 1.18773 1.19500 1.18563 1.20773 1.07114 0.97368 0.96324 1.20105 1.06082 1.00969 0.91409 1.19826 0.98178 0.94571 0.95936 1.21322 0.97786 1.00721 0.94690 1.21450 0.99957 0.95266 0.97704 1.21475 0.98348 0.95065 1.00040 1.21423 0.98050 1.00758 0.94413 1.21203 1.00683 0.94544 0.98175 0.91959 0.91436 0.92755 0.93940 0.95048 0.76703 0.88288 0.88465 0.90791 0.88366 0.86220 0.84975 0.84050 0.84077 0.84600 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.88 71.98 0.64 -2.01 16 2 C -0.05 -1.10 2.60 -11.54 -0.03 -1.13 16 3 H 0.09 1.79 7.88 -2.39 -0.02 1.78 16 4 C 0.15 4.37 4.02 86.38 0.35 4.72 16 5 N -0.75 -24.59 5.43 -338.98 -1.84 -26.43 16 6 C 0.11 4.81 6.67 38.67 0.26 5.07 16 7 C -0.18 -8.52 9.23 22.15 0.20 -8.32 16 8 C -0.14 -7.99 8.64 22.48 0.19 -7.79 16 9 C 0.04 2.01 5.57 -21.27 -0.12 1.89 16 10 C -0.51 -28.90 9.03 23.38 0.21 -28.69 16 11 H 0.07 3.78 7.91 -2.91 -0.02 3.76 16 12 C 0.03 1.67 5.13 85.23 0.44 2.10 16 13 N -0.84 -46.85 10.96 21.82 0.24 -46.61 16 14 Si 0.98 40.65 29.60 68.60 2.03 42.68 16 15 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 16 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 18 C -0.20 -9.91 9.74 22.47 0.22 -9.69 16 19 C -0.16 -7.21 9.82 22.15 0.22 -6.99 16 20 C -0.08 -1.84 4.78 -19.87 -0.09 -1.93 16 21 C -0.13 -2.48 9.67 22.27 0.22 -2.27 16 22 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 23 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 24 C -0.13 -2.43 10.05 22.27 0.22 -2.20 16 25 C -0.13 -2.77 8.76 22.27 0.20 -2.57 16 26 H 0.06 1.20 7.18 -2.39 -0.02 1.18 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.09 7.39 -2.39 -0.02 1.07 16 29 H 0.04 1.31 7.34 -2.39 -0.02 1.29 16 30 H 0.03 1.03 7.94 -2.39 -0.02 1.01 16 31 H 0.40 11.04 7.65 -92.71 -0.71 10.33 16 32 H 0.10 4.44 6.68 -2.91 -0.02 4.42 16 33 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 34 H 0.28 14.31 8.30 -92.71 -0.77 13.54 16 35 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 36 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.13 2.17 7.95 -2.91 -0.02 2.14 16 38 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 41 H 0.12 2.55 7.16 -2.91 -0.02 2.53 16 Total: -1.00 -63.90 337.96 4.31 -59.59 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 0.31 Total: 34.53 kcal Atomic # 6 Polarization: -67.33 SS G_CDS: 3.57 Total: -63.77 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -1.60 Total: -73.04 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -63.90 4.31 -59.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071204.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.865 kcal (2) G-P(sol) polarization free energy of solvation -63.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds