Wall clock time and date at job start Tue Mar 31 2020 05:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47041 * 2 1 4 4 C 1.53001 * 109.47004 * 239.99765 * 2 1 3 5 5 N 1.46498 * 109.47003 * 65.00163 * 4 2 1 6 6 C 1.38855 * 119.99831 * 180.02562 * 5 4 2 7 7 C 1.39570 * 119.84083 * 179.97438 * 6 5 4 8 8 C 1.36339 * 120.16012 * 180.25235 * 7 6 5 9 9 C 1.40887 * 119.83668 * 359.50290 * 8 7 6 10 10 C 1.41138 * 120.15717 * 180.24827 * 9 8 7 11 11 H 1.07993 * 120.00433 * 205.18075 * 10 9 8 12 12 C 1.39868 * 119.99920 * 25.18694 * 10 9 8 13 13 N 1.30909 * 120.00088 * 18.00238 * 12 10 9 14 14 Si 1.86801 * 120.00195 * 198.00244 * 12 10 9 15 15 H 1.48498 * 109.46643 * 94.51143 * 14 12 10 16 16 H 1.48493 * 109.47078 * 214.50948 * 14 12 10 17 17 H 1.48496 * 109.46808 * 334.51363 * 14 12 10 18 18 C 1.40885 * 119.68810 * 0.47632 * 9 8 7 19 19 C 1.36342 * 119.83864 * 359.77131 * 18 9 8 20 20 C 1.50699 * 109.47119 * 120.00018 * 2 1 3 21 21 C 1.38241 * 119.99997 * 59.72391 * 20 2 1 22 22 C 1.38234 * 119.99885 * 179.80851 * 21 20 2 23 23 C 1.38244 * 119.99897 * 0.40293 * 22 21 20 24 24 C 1.38231 * 120.00126 * 359.85292 * 23 22 21 25 25 C 1.38229 * 120.00096 * 239.99891 * 20 2 1 26 26 H 1.08990 * 109.46976 * 59.99965 * 1 2 3 27 27 H 1.09000 * 109.47041 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46661 * 300.00043 * 1 2 3 29 29 H 1.09000 * 109.46965 * 304.99915 * 4 2 1 30 30 H 1.08999 * 109.46793 * 185.00205 * 4 2 1 31 31 H 0.97002 * 120.00019 * 359.97438 * 5 4 2 32 32 H 1.08000 * 119.91833 * 359.97438 * 7 6 5 33 33 H 1.08003 * 120.08500 * 179.74364 * 8 7 6 34 34 H 0.96998 * 120.00024 * 179.97438 * 13 12 10 35 35 H 1.08006 * 120.08173 * 179.75905 * 18 9 8 36 36 H 1.07997 * 119.92133 * 179.97438 * 19 18 9 37 37 H 1.07994 * 120.00100 * 0.02562 * 21 20 2 38 38 H 1.08001 * 120.00430 * 180.22851 * 22 21 20 39 39 H 1.07998 * 119.99940 * 179.83543 * 23 22 21 40 40 H 1.07993 * 120.00586 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.00085 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0060 -0.4273 -3.7029 7 6 1.6346 0.2958 -4.8374 8 6 1.9738 -0.1551 -6.0786 9 6 2.7100 -1.3486 -6.2138 10 6 3.0693 -1.8189 -7.4951 11 1 3.2539 -2.8713 -7.6520 12 6 3.1864 -0.9218 -8.5618 13 7 3.3148 0.3599 -8.3281 14 14 3.1596 -1.5525 -10.3199 15 1 1.7762 -1.4719 -10.8535 16 1 4.0623 -0.7225 -11.1573 17 1 3.6189 -2.9644 -10.3463 18 6 3.0818 -2.0731 -5.0641 19 6 2.7314 -1.6130 -3.8295 20 6 2.0324 -0.7104 1.2305 21 6 1.6937 -2.0322 1.4521 22 6 2.1578 -2.6850 2.5788 23 6 2.9537 -2.0136 3.4881 24 6 3.2880 -0.6903 3.2691 25 6 2.8271 -0.0387 2.1403 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.6054 -1.7199 -1.2951 30 1 3.1263 -0.7995 -1.2055 31 1 1.1483 0.8590 -2.3517 32 1 1.0733 1.2125 -4.7321 33 1 1.6822 0.4033 -6.9559 34 1 3.3964 0.9819 -9.0678 35 1 3.6429 -2.9910 -5.1605 36 1 3.0153 -2.1675 -2.9473 37 1 1.0695 -2.5559 0.7433 38 1 1.8963 -3.7188 2.7501 39 1 3.3140 -2.5228 4.3697 40 1 3.9093 -0.1655 3.9796 41 1 3.0884 0.9952 1.9692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:17 Heat of formation + Delta-G solvation = 34.211703 kcal Electronic energy + Delta-G solvation = -20371.764383 eV Core-core repulsion = 17408.315535 eV Total energy + Delta-G solvation = -2963.448848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.67137 -37.96559 -36.10164 -33.93956 -32.37545 -31.02985 -29.75726 -29.37332 -28.32137 -26.12687 -24.14999 -23.20189 -22.48540 -21.05139 -20.21716 -19.68842 -17.16955 -17.04798 -16.03720 -15.64682 -15.21441 -14.97518 -14.57788 -14.19827 -13.82744 -13.67179 -13.44948 -13.12182 -12.83064 -12.56017 -12.44745 -12.14773 -11.94274 -11.80929 -11.56143 -11.29564 -11.12347 -11.01473 -10.88730 -10.72618 -10.66274 -10.39577 -9.63498 -9.26928 -9.20145 -9.03415 -8.80496 -8.50617 -7.46007 -6.62068 -6.35385 -4.00834 1.23944 1.28610 2.93359 3.12894 3.17042 3.20752 3.38243 3.66186 4.07591 4.25900 4.66299 4.77722 4.79559 4.88454 4.98211 5.05067 5.14969 5.34280 5.38474 5.44327 5.75957 5.78908 5.84186 5.90164 5.94078 6.05210 6.15652 6.19087 6.31062 6.34221 6.36412 6.39682 6.57902 6.87690 6.89698 7.09593 7.23349 7.34239 7.62002 7.69450 7.82971 8.17945 8.36893 8.52027 8.71146 8.83169 9.08786 9.18168 10.40148 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038187 B = 0.002873 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.067093 B = 9742.449027 C =10052.467956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 H 0.081 0.919 4 C 0.149 3.851 5 N -0.761 5.761 6 C 0.093 3.907 7 C -0.163 4.163 8 C -0.123 4.123 9 C 0.075 3.925 10 C -0.468 4.468 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.808 5.808 14 Si 0.903 3.097 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.264 1.264 18 C -0.188 4.188 19 C -0.160 4.160 20 C -0.068 4.068 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.117 4.117 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.384 0.616 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.276 0.724 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 -0.375 18.488 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.083 4.083 3 H 0.099 0.901 4 C 0.024 3.976 5 N -0.397 5.397 6 C -0.004 4.004 7 C -0.185 4.185 8 C -0.143 4.143 9 C 0.072 3.928 10 C -0.499 4.499 11 H 0.091 0.909 12 C -0.141 4.141 13 N -0.436 5.436 14 Si 0.728 3.272 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.188 1.188 18 C -0.208 4.208 19 C -0.182 4.182 20 C -0.069 4.069 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.135 4.135 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.212 -0.313 18.442 18.723 hybrid contribution -0.020 0.104 -0.756 0.763 sum -3.232 -0.208 17.687 17.981 Atomic orbital electron populations 1.21820 0.93910 1.02345 1.01706 1.20372 0.96436 0.99487 0.91974 0.90112 1.21001 0.98434 0.94612 0.83566 1.43868 1.65515 1.28084 1.02248 1.17340 1.03181 0.95981 0.83886 1.20030 1.06261 0.99797 0.92434 1.20903 0.99475 0.98638 0.95246 1.17491 0.90966 0.92021 0.92343 1.19375 1.42581 0.94972 0.92962 0.90950 1.25795 0.92679 0.94516 1.01060 1.69863 1.37037 1.03075 1.33611 0.86396 0.78737 0.79852 0.82215 1.19629 1.20584 1.18832 1.20565 1.06120 1.02034 0.92120 1.19869 1.04782 0.96897 0.96626 1.19796 0.97142 0.94279 0.95671 1.21074 1.00073 0.94328 0.97539 1.21151 0.98085 0.99828 0.94651 1.21127 0.99025 0.94924 0.99520 1.21119 1.00102 0.95010 0.97625 1.21095 0.97974 0.99966 0.94425 0.91862 0.92361 0.92840 0.93419 0.93547 0.78324 0.89576 0.86451 0.91370 0.89158 0.89531 0.85903 0.86159 0.86357 0.86250 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.88 37.16 0.33 -1.17 16 2 C -0.06 -0.74 2.60 -91.77 -0.24 -0.98 16 3 H 0.08 0.91 7.88 -51.93 -0.41 0.50 16 4 C 0.15 2.22 4.02 -4.04 -0.02 2.20 16 5 N -0.76 -13.23 5.43 -58.50 -0.32 -13.55 16 6 C 0.09 2.05 6.67 -83.69 -0.56 1.49 16 7 C -0.16 -3.85 9.82 -39.77 -0.39 -4.24 16 8 C -0.12 -3.25 8.63 -39.26 -0.34 -3.59 16 9 C 0.07 2.05 5.57 -106.79 -0.59 1.45 16 10 C -0.47 -12.88 9.03 -37.87 -0.34 -13.22 16 11 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 12 C 0.07 1.95 5.12 -17.34 -0.09 1.86 16 13 N -0.81 -21.72 11.00 55.54 0.61 -21.11 16 14 Si 0.90 19.45 29.60 -169.99 -5.03 14.42 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 18 C -0.19 -4.76 9.74 -39.26 -0.38 -5.14 16 19 C -0.16 -3.67 9.23 -39.77 -0.37 -4.04 16 20 C -0.07 -0.77 4.78 -104.62 -0.50 -1.27 16 21 C -0.11 -1.23 8.76 -39.58 -0.35 -1.57 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 25 C -0.12 -1.22 9.67 -39.58 -0.38 -1.60 16 26 H 0.06 0.69 7.18 -51.93 -0.37 0.32 16 27 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.73 7.37 -51.93 -0.38 0.35 16 30 H 0.05 0.75 7.93 -51.93 -0.41 0.34 16 31 H 0.38 5.98 7.65 -40.82 -0.31 5.66 16 32 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 33 H 0.12 3.22 6.21 -52.48 -0.33 2.89 16 34 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 35 H 0.09 2.17 8.06 -52.48 -0.42 1.74 16 36 H 0.09 1.80 6.68 -52.49 -0.35 1.45 16 37 H 0.12 1.27 7.16 -52.49 -0.38 0.90 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 1.10 7.95 -52.48 -0.42 0.68 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -28.98 338.02 -10.88 -39.86 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.83 Total: 9.81 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: -5.41 Total: -34.53 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.29 Total: -34.65 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.98 -10.88 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.068 kcal (2) G-P(sol) polarization free energy of solvation -28.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds