Wall clock time and date at job start Tue Mar 31 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47041 * 2 1 4 4 C 1.53001 * 109.47004 * 239.99765 * 2 1 3 5 5 N 1.46498 * 109.47003 * 65.00163 * 4 2 1 6 6 C 1.38855 * 119.99831 * 180.02562 * 5 4 2 7 7 C 1.39570 * 119.84083 * 179.97438 * 6 5 4 8 8 C 1.36339 * 120.16012 * 180.25235 * 7 6 5 9 9 C 1.40887 * 119.83668 * 359.50290 * 8 7 6 10 10 C 1.41138 * 120.15717 * 180.24827 * 9 8 7 11 11 H 1.07993 * 120.00433 * 205.18075 * 10 9 8 12 12 C 1.39868 * 119.99920 * 25.18694 * 10 9 8 13 13 N 1.30909 * 120.00088 * 18.00238 * 12 10 9 14 14 Si 1.86801 * 120.00195 * 198.00244 * 12 10 9 15 15 H 1.48498 * 109.46643 * 94.51143 * 14 12 10 16 16 H 1.48493 * 109.47078 * 214.50948 * 14 12 10 17 17 H 1.48496 * 109.46808 * 334.51363 * 14 12 10 18 18 C 1.40885 * 119.68810 * 0.47632 * 9 8 7 19 19 C 1.36342 * 119.83864 * 359.77131 * 18 9 8 20 20 C 1.50699 * 109.47119 * 120.00018 * 2 1 3 21 21 C 1.38241 * 119.99997 * 59.72391 * 20 2 1 22 22 C 1.38234 * 119.99885 * 179.80851 * 21 20 2 23 23 C 1.38244 * 119.99897 * 0.40293 * 22 21 20 24 24 C 1.38231 * 120.00126 * 359.85292 * 23 22 21 25 25 C 1.38229 * 120.00096 * 239.99891 * 20 2 1 26 26 H 1.08990 * 109.46976 * 59.99965 * 1 2 3 27 27 H 1.09000 * 109.47041 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46661 * 300.00043 * 1 2 3 29 29 H 1.09000 * 109.46965 * 304.99915 * 4 2 1 30 30 H 1.08999 * 109.46793 * 185.00205 * 4 2 1 31 31 H 0.97002 * 120.00019 * 359.97438 * 5 4 2 32 32 H 1.08000 * 119.91833 * 359.97438 * 7 6 5 33 33 H 1.08003 * 120.08500 * 179.74364 * 8 7 6 34 34 H 0.96998 * 120.00024 * 179.97438 * 13 12 10 35 35 H 1.08006 * 120.08173 * 179.75905 * 18 9 8 36 36 H 1.07997 * 119.92133 * 179.97438 * 19 18 9 37 37 H 1.07994 * 120.00100 * 0.02562 * 21 20 2 38 38 H 1.08001 * 120.00430 * 180.22851 * 22 21 20 39 39 H 1.07998 * 119.99940 * 179.83543 * 23 22 21 40 40 H 1.07993 * 120.00586 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.00085 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0060 -0.4273 -3.7029 7 6 1.6346 0.2958 -4.8374 8 6 1.9738 -0.1551 -6.0786 9 6 2.7100 -1.3486 -6.2138 10 6 3.0693 -1.8189 -7.4951 11 1 3.2539 -2.8713 -7.6520 12 6 3.1864 -0.9218 -8.5618 13 7 3.3148 0.3599 -8.3281 14 14 3.1596 -1.5525 -10.3199 15 1 1.7762 -1.4719 -10.8535 16 1 4.0623 -0.7225 -11.1573 17 1 3.6189 -2.9644 -10.3463 18 6 3.0818 -2.0731 -5.0641 19 6 2.7314 -1.6130 -3.8295 20 6 2.0324 -0.7104 1.2305 21 6 1.6937 -2.0322 1.4521 22 6 2.1578 -2.6850 2.5788 23 6 2.9537 -2.0136 3.4881 24 6 3.2880 -0.6903 3.2691 25 6 2.8271 -0.0387 2.1403 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.6054 -1.7199 -1.2951 30 1 3.1263 -0.7995 -1.2055 31 1 1.1483 0.8590 -2.3517 32 1 1.0733 1.2125 -4.7321 33 1 1.6822 0.4033 -6.9559 34 1 3.3964 0.9819 -9.0678 35 1 3.6429 -2.9910 -5.1605 36 1 3.0153 -2.1675 -2.9473 37 1 1.0695 -2.5559 0.7433 38 1 1.8963 -3.7188 2.7501 39 1 3.3140 -2.5228 4.3697 40 1 3.9093 -0.1655 3.9796 41 1 3.0884 0.9952 1.9692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037071205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:16 Heat of formation + Delta-G solvation = 21.116202 kcal Electronic energy + Delta-G solvation = -20372.332247 eV Core-core repulsion = 17408.315535 eV Total energy + Delta-G solvation = -2964.016712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.53337 -39.67140 -37.42769 -35.55837 -33.95852 -31.76904 -31.47869 -30.73946 -29.79724 -27.49072 -25.81856 -24.21312 -23.34654 -22.72940 -21.94730 -20.81861 -19.09999 -18.09598 -17.35654 -17.12458 -16.53937 -16.01019 -15.86331 -15.60882 -15.21579 -14.74337 -14.56284 -14.36012 -14.16076 -13.97653 -13.75068 -13.62012 -13.54822 -13.08410 -12.94642 -12.76426 -12.65071 -12.33354 -12.22003 -12.07683 -11.71172 -11.56413 -11.51075 -11.18457 -11.05723 -10.29420 -9.78369 -9.59051 -9.40281 -8.55302 -8.15794 -6.00815 0.47106 0.53599 1.10086 1.18749 1.40434 1.53482 1.59078 2.27877 2.81265 2.84926 2.98576 3.78910 3.85217 3.85344 4.12320 4.18850 4.22518 4.32649 4.42093 4.46246 4.50334 4.64846 4.68514 4.75772 4.88620 4.97616 4.99873 5.11118 5.17279 5.19358 5.21316 5.31887 5.32192 5.42229 5.61754 5.66197 5.73815 5.76480 5.76784 5.92828 6.15659 6.18702 6.41298 6.67311 6.87394 7.08682 7.13979 7.31418 8.48761 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038187 B = 0.002873 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.067093 B = 9742.449027 C =10052.467956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 H 0.087 0.913 4 C 0.150 3.850 5 N -0.749 5.749 6 C 0.113 3.887 7 C -0.173 4.173 8 C -0.141 4.141 9 C 0.036 3.964 10 C -0.506 4.506 11 H 0.067 0.933 12 C 0.032 3.968 13 N -0.842 5.842 14 Si 0.977 3.023 15 H -0.264 1.264 16 H -0.270 1.270 17 H -0.261 1.261 18 C -0.198 4.198 19 C -0.168 4.168 20 C -0.084 4.084 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.128 4.128 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.396 0.604 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.282 0.718 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.551 -0.285 20.255 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.070 4.070 3 H 0.105 0.895 4 C 0.025 3.975 5 N -0.385 5.385 6 C 0.014 3.986 7 C -0.195 4.195 8 C -0.161 4.161 9 C 0.033 3.967 10 C -0.538 4.538 11 H 0.085 0.915 12 C -0.180 4.180 13 N -0.470 5.470 14 Si 0.799 3.201 15 H -0.189 1.189 16 H -0.195 1.195 17 H -0.185 1.185 18 C -0.218 4.218 19 C -0.190 4.190 20 C -0.084 4.084 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.149 4.149 24 C -0.144 4.144 25 C -0.146 4.146 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.231 0.769 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.431 -0.210 20.262 20.551 hybrid contribution 0.038 0.085 -1.051 1.055 sum -3.393 -0.125 19.211 19.509 Atomic orbital electron populations 1.21796 0.93137 1.02376 1.02174 1.20233 0.96966 0.99317 0.90515 0.89491 1.21104 0.97832 0.94754 0.83821 1.43915 1.64640 1.28515 1.01404 1.17435 1.00897 0.94923 0.85375 1.20235 1.06487 1.00800 0.91960 1.20858 1.00517 0.98813 0.95925 1.17809 0.92428 0.93208 0.93207 1.19588 1.44832 0.95077 0.94278 0.91527 1.26617 0.91738 0.94541 1.05118 1.69920 1.37729 1.04197 1.35143 0.85271 0.79037 0.79235 0.76562 1.18908 1.19505 1.18539 1.20749 1.06263 1.02174 0.92650 1.20094 1.04813 0.97502 0.96601 1.19804 0.98149 0.94617 0.95854 1.21202 1.00589 0.94484 0.98207 1.21429 0.97983 1.00764 0.94379 1.21473 0.98360 0.95027 1.00047 1.21439 0.99980 0.95311 0.97660 1.21315 0.97886 1.00653 0.94722 0.92194 0.92579 0.91531 0.93585 0.94623 0.76920 0.87275 0.88198 0.90732 0.88822 0.87237 0.85991 0.84518 0.84105 0.84148 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.88 71.98 0.64 -2.01 16 2 C -0.05 -1.10 2.60 -11.54 -0.03 -1.13 16 3 H 0.09 1.75 7.88 -2.39 -0.02 1.73 16 4 C 0.15 4.18 4.02 86.38 0.35 4.53 16 5 N -0.75 -24.64 5.43 -338.99 -1.84 -26.48 16 6 C 0.11 4.88 6.67 38.67 0.26 5.14 16 7 C -0.17 -8.12 9.82 22.15 0.22 -7.90 16 8 C -0.14 -7.69 8.63 22.48 0.19 -7.50 16 9 C 0.04 2.06 5.57 -21.27 -0.12 1.94 16 10 C -0.51 -28.93 9.03 23.38 0.21 -28.72 16 11 H 0.07 3.71 7.91 -2.91 -0.02 3.68 16 12 C 0.03 1.69 5.12 85.22 0.44 2.13 16 13 N -0.84 -46.42 11.00 21.82 0.24 -46.18 16 14 Si 0.98 40.58 29.60 68.60 2.03 42.61 16 15 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 16 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 18 C -0.20 -10.22 9.74 22.48 0.22 -10.01 16 19 C -0.17 -7.64 9.23 22.15 0.20 -7.44 16 20 C -0.08 -1.74 4.78 -19.87 -0.09 -1.84 16 21 C -0.13 -2.58 8.76 22.27 0.20 -2.38 16 22 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 23 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 24 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 25 C -0.13 -2.41 9.67 22.27 0.22 -2.20 16 26 H 0.06 1.18 7.18 -2.39 -0.02 1.17 16 27 H 0.06 1.10 7.38 -2.39 -0.02 1.08 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.33 7.37 -2.39 -0.02 1.31 16 30 H 0.04 1.10 7.93 -2.39 -0.02 1.08 16 31 H 0.40 11.39 7.65 -92.71 -0.71 10.68 16 32 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 33 H 0.10 5.70 6.21 -2.91 -0.02 5.69 16 34 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16 35 H 0.09 4.61 8.06 -2.91 -0.02 4.59 16 36 H 0.11 4.42 6.68 -2.91 -0.02 4.40 16 37 H 0.12 2.40 7.16 -2.91 -0.02 2.38 16 38 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 39 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.13 2.10 7.95 -2.91 -0.02 2.07 16 Total: -1.00 -63.44 338.02 4.31 -59.14 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.31 Total: 34.05 kcal Atomic # 6 Polarization: -66.70 SS G_CDS: 3.57 Total: -63.14 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.60 Total: -72.66 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -63.44 4.31 -59.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.253 kcal (2) G-P(sol) polarization free energy of solvation -63.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds