Wall clock time and date at job start Tue Mar 31 2020 05:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.46944 * 2 1 4 4 C 1.38232 * 120.00492 * 269.72736 * 3 2 1 5 5 C 1.38233 * 120.00514 * 179.76825 * 4 3 2 6 6 C 1.38232 * 119.99954 * 0.50546 * 5 4 3 7 7 C 1.50698 * 120.00141 * 179.72688 * 6 5 4 8 8 N 1.46499 * 109.47157 * 270.02063 * 7 6 5 9 9 C 1.38857 * 119.99884 * 180.02562 * 8 7 6 10 10 C 1.39559 * 119.84102 * 359.72514 * 9 8 7 11 11 C 1.36353 * 120.15851 * 179.72076 * 10 9 8 12 12 C 1.40883 * 119.83134 * 0.55180 * 11 10 9 13 13 C 1.41142 * 120.15352 * 179.69533 * 12 11 10 14 14 H 1.07996 * 119.99690 * 155.10577 * 13 12 11 15 15 C 1.39865 * 120.00048 * 335.11624 * 13 12 11 16 16 N 1.30905 * 119.99959 * 342.13015 * 15 13 12 17 17 Si 1.86797 * 120.00062 * 162.12306 * 15 13 12 18 18 H 1.48499 * 109.46956 * 94.65277 * 17 15 13 19 19 H 1.48495 * 109.47355 * 214.65618 * 17 15 13 20 20 H 1.48507 * 109.47140 * 334.65661 * 17 15 13 21 21 C 1.40887 * 119.69488 * 359.72677 * 12 11 10 22 22 C 1.36345 * 119.83318 * 359.97438 * 21 12 11 23 23 C 1.38238 * 119.99871 * 359.74268 * 6 5 4 24 24 C 1.38236 * 120.00167 * 0.02562 * 23 6 5 25 25 H 1.09000 * 109.47429 * 59.99931 * 1 2 3 26 26 H 1.09001 * 109.47417 * 299.99468 * 1 2 3 27 27 H 1.09002 * 109.47169 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47429 * 120.00069 * 2 1 3 29 29 H 1.08995 * 109.47137 * 239.99884 * 2 1 3 30 30 H 1.08003 * 119.99359 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.99993 * 180.23345 * 5 4 3 32 32 H 1.08998 * 109.47104 * 30.02185 * 7 6 5 33 33 H 1.09009 * 109.47246 * 150.02130 * 7 6 5 34 34 H 0.96996 * 119.99595 * 359.97438 * 8 7 6 35 35 H 1.07998 * 119.92415 * 359.97438 * 10 9 8 36 36 H 1.07995 * 120.08198 * 180.27789 * 11 10 9 37 37 H 0.97001 * 119.99716 * 180.02562 * 16 15 13 38 38 H 1.07994 * 120.08521 * 179.97438 * 21 12 11 39 39 H 1.07992 * 119.91993 * 179.97438 * 22 21 12 40 40 H 1.07998 * 119.99638 * 179.97438 * 23 6 5 41 41 H 1.07993 * 120.00584 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2680 2.0706 -1.1971 5 6 2.7242 3.3755 -1.1971 6 6 2.9546 4.0272 0.0000 7 6 3.4578 5.4477 0.0000 8 7 4.9227 5.4468 0.0000 9 6 5.6177 6.6490 0.0006 10 6 4.9173 7.8560 -0.0047 11 6 5.5931 9.0403 0.0016 12 6 7.0019 9.0432 0.0016 13 6 7.7084 10.2650 0.0015 14 1 8.7131 10.3078 0.3952 15 6 7.1072 11.4204 -0.5082 16 7 6.0612 11.3239 -1.2893 17 14 7.7968 13.1014 -0.0742 18 1 8.7366 13.5402 -1.1369 19 1 6.6845 14.0789 0.0376 20 1 8.5175 13.0212 1.2217 21 6 7.7024 7.8207 0.0009 22 6 7.0134 6.6442 0.0009 23 6 2.7237 3.3757 1.1972 24 6 2.2630 2.0724 1.1972 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 2.0926 1.5598 -2.1324 31 1 2.9048 3.8844 -2.1325 32 1 3.0947 5.9617 -0.8899 33 1 3.0947 5.9618 0.8901 34 1 5.4072 4.6065 0.0004 35 1 3.8373 7.8522 -0.0096 36 1 5.0498 9.9736 0.0020 37 1 5.6445 12.1252 -1.6431 38 1 8.7823 7.8156 0.0005 39 1 7.5489 5.7064 0.0000 40 1 2.9041 3.8847 2.1325 41 1 2.0830 1.5632 2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:51 Heat of formation + Delta-G solvation = 30.874019 kcal Electronic energy + Delta-G solvation = -20052.747489 eV Core-core repulsion = 17089.153908 eV Total energy + Delta-G solvation = -2963.593581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.65028 -37.87410 -35.57891 -34.08488 -32.76882 -30.98479 -30.29196 -29.42931 -28.30869 -25.89301 -24.01334 -22.95223 -22.77519 -21.16032 -20.51290 -19.83902 -17.18036 -16.63629 -15.88689 -15.76853 -15.15458 -14.98679 -14.53566 -14.03031 -13.89685 -13.80028 -13.50982 -13.00732 -12.95708 -12.72627 -12.56635 -12.14582 -11.98471 -11.68836 -11.62370 -11.47541 -11.18891 -11.00790 -10.93608 -10.85015 -10.74664 -10.43935 -9.68848 -9.28545 -9.20072 -8.97195 -8.64091 -8.50687 -7.46911 -6.61826 -6.36200 -4.00904 1.21942 1.35610 2.93325 3.12390 3.16352 3.21437 3.37374 3.62371 4.07383 4.52556 4.60601 4.64896 4.78855 4.92363 4.95389 4.95860 5.09802 5.29253 5.38164 5.42486 5.61648 5.70484 5.77092 5.84306 5.86782 5.92198 6.06981 6.07651 6.29857 6.34657 6.35839 6.51460 6.66932 6.93437 6.95827 6.96937 7.22655 7.38305 7.57601 7.71614 7.86853 8.17740 8.31595 8.51622 8.73153 8.82746 9.08492 9.17791 10.39779 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.050728 B = 0.002622 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.829395 B =10677.376997 C =10865.607728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.122 4.122 5 C -0.100 4.100 6 C -0.097 4.097 7 C 0.177 3.823 8 N -0.757 5.757 9 C 0.093 3.907 10 C -0.164 4.164 11 C -0.124 4.124 12 C 0.074 3.926 13 C -0.467 4.467 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.808 5.808 17 Si 0.902 3.098 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.186 4.186 22 C -0.159 4.159 23 C -0.100 4.100 24 C -0.122 4.122 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.385 0.615 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.276 0.724 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 -16.962 1.882 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.140 4.140 5 C -0.118 4.118 6 C -0.097 4.097 7 C 0.052 3.948 8 N -0.393 5.393 9 C -0.004 4.004 10 C -0.186 4.186 11 C -0.144 4.144 12 C 0.071 3.929 13 C -0.498 4.498 14 H 0.090 0.910 15 C -0.141 4.141 16 N -0.436 5.436 17 Si 0.727 3.273 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.206 4.206 22 C -0.181 4.181 23 C -0.118 4.118 24 C -0.140 4.140 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.217 0.783 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.141 0.859 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.394 -16.699 1.741 19.746 hybrid contribution 0.441 0.546 0.031 0.702 sum -9.953 -16.153 1.772 19.056 Atomic orbital electron populations 1.21747 0.94783 1.01562 1.02291 1.20534 0.96144 0.92810 1.02714 1.19890 0.99215 0.96131 0.93296 1.20997 1.00619 0.94933 0.97420 1.21128 0.98219 0.94548 0.97909 1.20081 0.99831 0.96592 0.93203 1.19907 0.82891 0.91000 1.00961 1.43860 1.02652 1.05364 1.87411 1.17353 0.90581 0.85074 1.07419 1.20092 0.97131 0.91991 1.09404 1.20929 0.94598 0.96127 1.02771 1.17499 0.91873 0.92071 0.91470 1.19355 1.01209 0.92567 1.36668 0.90973 1.25796 0.94438 1.00974 0.92873 1.69861 1.19339 1.30821 1.23532 0.86415 0.79262 0.81706 0.79928 1.19883 1.20302 1.18685 1.20548 0.97491 0.92247 1.10358 1.19805 0.91660 0.96900 1.09698 1.21116 0.98289 0.94570 0.97861 1.20993 1.00647 0.94951 0.97406 0.92532 0.92548 0.92513 0.91151 0.91145 0.86279 0.85867 0.92693 0.92750 0.78292 0.89409 0.86420 0.91368 0.89052 0.89634 0.85903 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 37.16 0.37 -0.64 16 2 C -0.08 -0.65 6.07 -27.89 -0.17 -0.82 16 3 C -0.09 -0.86 5.13 -104.62 -0.54 -1.40 16 4 C -0.12 -1.30 9.70 -39.59 -0.38 -1.68 16 5 C -0.10 -1.21 9.70 -39.59 -0.38 -1.60 16 6 C -0.10 -1.27 5.25 -104.62 -0.55 -1.82 16 7 C 0.18 2.75 5.01 -5.19 -0.03 2.72 16 8 N -0.76 -13.58 5.69 -59.67 -0.34 -13.92 16 9 C 0.09 2.05 6.67 -83.69 -0.56 1.49 16 10 C -0.16 -3.90 9.23 -39.77 -0.37 -4.27 16 11 C -0.12 -3.30 8.63 -39.26 -0.34 -3.64 16 12 C 0.07 2.02 5.57 -106.79 -0.59 1.43 16 13 C -0.47 -12.83 9.03 -37.87 -0.34 -13.17 16 14 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 15 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 16 N -0.81 -21.69 10.98 55.54 0.61 -21.08 16 17 Si 0.90 19.41 29.59 -169.99 -5.03 14.38 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 21 C -0.19 -4.69 9.74 -39.26 -0.38 -5.07 16 22 C -0.16 -3.63 9.82 -39.77 -0.39 -4.02 16 23 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 24 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 31 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 32 H 0.05 0.88 7.86 -51.93 -0.41 0.48 16 33 H 0.05 0.86 7.88 -51.92 -0.41 0.45 16 34 H 0.38 6.39 8.46 -40.82 -0.35 6.04 16 35 H 0.09 1.90 6.68 -52.49 -0.35 1.55 16 36 H 0.12 3.23 6.18 -52.49 -0.32 2.91 16 37 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 38 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 40 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -28.64 343.77 -11.12 -39.77 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.03 Total: 9.57 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: -5.51 Total: -33.89 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.27 Total: -35.00 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.64 -11.12 -39.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.642 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds