Wall clock time and date at job start Tue Mar 31 2020 05:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.46944 * 2 1 4 4 C 1.38232 * 120.00492 * 269.72736 * 3 2 1 5 5 C 1.38233 * 120.00514 * 179.76825 * 4 3 2 6 6 C 1.38232 * 119.99954 * 0.50546 * 5 4 3 7 7 C 1.50698 * 120.00141 * 179.72688 * 6 5 4 8 8 N 1.46499 * 109.47157 * 270.02063 * 7 6 5 9 9 C 1.38857 * 119.99884 * 180.02562 * 8 7 6 10 10 C 1.39559 * 119.84102 * 359.72514 * 9 8 7 11 11 C 1.36353 * 120.15851 * 179.72076 * 10 9 8 12 12 C 1.40883 * 119.83134 * 0.55180 * 11 10 9 13 13 C 1.41142 * 120.15352 * 179.69533 * 12 11 10 14 14 H 1.07996 * 119.99690 * 155.10577 * 13 12 11 15 15 C 1.39865 * 120.00048 * 335.11624 * 13 12 11 16 16 N 1.30905 * 119.99959 * 342.13015 * 15 13 12 17 17 Si 1.86797 * 120.00062 * 162.12306 * 15 13 12 18 18 H 1.48499 * 109.46956 * 94.65277 * 17 15 13 19 19 H 1.48495 * 109.47355 * 214.65618 * 17 15 13 20 20 H 1.48507 * 109.47140 * 334.65661 * 17 15 13 21 21 C 1.40887 * 119.69488 * 359.72677 * 12 11 10 22 22 C 1.36345 * 119.83318 * 359.97438 * 21 12 11 23 23 C 1.38238 * 119.99871 * 359.74268 * 6 5 4 24 24 C 1.38236 * 120.00167 * 0.02562 * 23 6 5 25 25 H 1.09000 * 109.47429 * 59.99931 * 1 2 3 26 26 H 1.09001 * 109.47417 * 299.99468 * 1 2 3 27 27 H 1.09002 * 109.47169 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47429 * 120.00069 * 2 1 3 29 29 H 1.08995 * 109.47137 * 239.99884 * 2 1 3 30 30 H 1.08003 * 119.99359 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.99993 * 180.23345 * 5 4 3 32 32 H 1.08998 * 109.47104 * 30.02185 * 7 6 5 33 33 H 1.09009 * 109.47246 * 150.02130 * 7 6 5 34 34 H 0.96996 * 119.99595 * 359.97438 * 8 7 6 35 35 H 1.07998 * 119.92415 * 359.97438 * 10 9 8 36 36 H 1.07995 * 120.08198 * 180.27789 * 11 10 9 37 37 H 0.97001 * 119.99716 * 180.02562 * 16 15 13 38 38 H 1.07994 * 120.08521 * 179.97438 * 21 12 11 39 39 H 1.07992 * 119.91993 * 179.97438 * 22 21 12 40 40 H 1.07998 * 119.99638 * 179.97438 * 23 6 5 41 41 H 1.07993 * 120.00584 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2680 2.0706 -1.1971 5 6 2.7242 3.3755 -1.1971 6 6 2.9546 4.0272 0.0000 7 6 3.4578 5.4477 0.0000 8 7 4.9227 5.4468 0.0000 9 6 5.6177 6.6490 0.0006 10 6 4.9173 7.8560 -0.0047 11 6 5.5931 9.0403 0.0016 12 6 7.0019 9.0432 0.0016 13 6 7.7084 10.2650 0.0015 14 1 8.7131 10.3078 0.3952 15 6 7.1072 11.4204 -0.5082 16 7 6.0612 11.3239 -1.2893 17 14 7.7968 13.1014 -0.0742 18 1 8.7366 13.5402 -1.1369 19 1 6.6845 14.0789 0.0376 20 1 8.5175 13.0212 1.2217 21 6 7.7024 7.8207 0.0009 22 6 7.0134 6.6442 0.0009 23 6 2.7237 3.3757 1.1972 24 6 2.2630 2.0724 1.1972 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 2.0926 1.5598 -2.1324 31 1 2.9048 3.8844 -2.1325 32 1 3.0947 5.9617 -0.8899 33 1 3.0947 5.9618 0.8901 34 1 5.4072 4.6065 0.0004 35 1 3.8373 7.8522 -0.0096 36 1 5.0498 9.9736 0.0020 37 1 5.6445 12.1252 -1.6431 38 1 8.7823 7.8156 0.0005 39 1 7.5489 5.7064 0.0000 40 1 2.9041 3.8847 2.1325 41 1 2.0830 1.5632 2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037071261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:51 Heat of formation + Delta-G solvation = 18.169610 kcal Electronic energy + Delta-G solvation = -20053.298393 eV Core-core repulsion = 17089.153908 eV Total energy + Delta-G solvation = -2964.144486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.58741 -39.63724 -36.98013 -35.41935 -34.28875 -31.84441 -31.54878 -31.34517 -29.85879 -27.20824 -25.64741 -23.95617 -23.63840 -22.84779 -21.87482 -21.26747 -19.15279 -18.08127 -17.06085 -16.82461 -16.64110 -16.31648 -15.84142 -15.53998 -14.85357 -14.71754 -14.47435 -14.43650 -14.41034 -14.04760 -13.94391 -13.58276 -13.56545 -13.13702 -12.82132 -12.72115 -12.55897 -12.49507 -12.28010 -12.09472 -11.67016 -11.65680 -11.58331 -11.19945 -11.06591 -10.31739 -9.83849 -9.53719 -9.41314 -8.55008 -8.17664 -6.00965 0.31756 0.48870 1.10392 1.17839 1.40260 1.52900 1.59259 2.27673 2.65717 2.84356 3.19008 3.75094 3.83733 3.89761 3.97439 4.13585 4.22697 4.43556 4.49693 4.51336 4.51528 4.58224 4.66993 4.75416 4.79084 5.02827 5.06293 5.10048 5.12919 5.13476 5.21501 5.27481 5.39755 5.44541 5.49894 5.67404 5.70476 5.72011 5.79504 5.95585 6.09006 6.18775 6.38509 6.66073 6.85701 7.08341 7.12493 7.29511 8.48557 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.050728 B = 0.002622 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.829395 B =10677.376997 C =10865.607728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.082 4.082 4 C -0.125 4.125 5 C -0.109 4.109 6 C -0.112 4.112 7 C 0.179 3.821 8 N -0.746 5.746 9 C 0.112 3.888 10 C -0.174 4.174 11 C -0.143 4.143 12 C 0.035 3.965 13 C -0.505 4.505 14 H 0.068 0.932 15 C 0.030 3.970 16 N -0.842 5.842 17 Si 0.977 3.023 18 H -0.265 1.265 19 H -0.268 1.268 20 H -0.261 1.261 21 C -0.195 4.195 22 C -0.165 4.165 23 C -0.108 4.108 24 C -0.124 4.124 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.138 0.862 31 H 0.122 0.878 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.394 0.606 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.282 0.718 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.730 -19.063 2.169 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.082 4.082 4 C -0.143 4.143 5 C -0.128 4.128 6 C -0.112 4.112 7 C 0.055 3.945 8 N -0.381 5.381 9 C 0.012 3.988 10 C -0.197 4.197 11 C -0.163 4.163 12 C 0.032 3.968 13 C -0.536 4.536 14 H 0.086 0.914 15 C -0.181 4.181 16 N -0.470 5.470 17 Si 0.798 3.202 18 H -0.190 1.190 19 H -0.193 1.193 20 H -0.185 1.185 21 C -0.215 4.215 22 C -0.187 4.187 23 C -0.126 4.126 24 C -0.142 4.142 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.156 0.844 31 H 0.140 0.860 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.229 0.771 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.134 0.866 40 H 0.143 0.857 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.083 -18.850 2.028 21.961 hybrid contribution 0.548 0.944 -0.064 1.094 sum -10.536 -17.905 1.964 20.868 Atomic orbital electron populations 1.21737 0.94184 1.02458 1.01877 1.20599 0.96538 0.91193 1.03780 1.20248 0.97822 0.97291 0.92856 1.21246 1.00007 0.94368 0.98670 1.21213 0.98674 0.95364 0.97528 1.19854 1.01749 0.95417 0.94221 1.19932 0.81155 0.93008 1.00441 1.43920 1.03858 1.04290 1.86020 1.17454 0.90731 0.86081 1.04492 1.20239 0.98060 0.91841 1.09516 1.20862 0.94600 0.96450 1.04434 1.17835 0.92563 0.93141 0.93289 1.19583 1.01608 0.93925 1.38503 0.91362 1.26637 0.94731 1.04614 0.92163 1.69924 1.20618 1.32166 1.24312 0.85279 0.78720 0.76543 0.79610 1.19004 1.19284 1.18507 1.20761 0.98068 0.92522 1.10146 1.20095 0.92154 0.97405 1.09056 1.21218 0.98552 0.95336 0.97501 1.21257 0.99933 0.94401 0.98639 0.93002 0.92934 0.91016 0.90080 0.90165 0.84373 0.85970 0.93361 0.92964 0.77140 0.87785 0.88286 0.90757 0.88404 0.86590 0.85691 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.89 71.98 0.71 -0.88 16 2 C -0.08 -1.01 6.07 29.85 0.18 -0.83 16 3 C -0.08 -1.43 5.13 -19.87 -0.10 -1.53 16 4 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16 5 C -0.11 -2.50 9.70 22.27 0.22 -2.29 16 6 C -0.11 -2.81 5.25 -19.87 -0.10 -2.91 16 7 C 0.18 5.40 5.01 85.63 0.43 5.83 16 8 N -0.75 -25.73 5.69 -342.71 -1.95 -27.68 16 9 C 0.11 4.87 6.67 38.67 0.26 5.13 16 10 C -0.17 -8.38 9.23 22.15 0.20 -8.18 16 11 C -0.14 -7.90 8.63 22.48 0.19 -7.70 16 12 C 0.03 1.96 5.57 -21.27 -0.12 1.84 16 13 C -0.50 -28.79 9.03 23.38 0.21 -28.58 16 14 H 0.07 3.77 7.91 -2.91 -0.02 3.75 16 15 C 0.03 1.62 5.13 85.22 0.44 2.06 16 16 N -0.84 -46.64 10.98 21.82 0.24 -46.40 16 17 Si 0.98 40.59 29.59 68.60 2.03 42.62 16 18 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 21 C -0.19 -9.95 9.74 22.48 0.22 -9.73 16 22 C -0.16 -7.42 9.82 22.15 0.22 -7.20 16 23 C -0.11 -2.40 9.70 22.27 0.22 -2.19 16 24 C -0.12 -2.32 9.70 22.27 0.22 -2.10 16 25 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 29 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 30 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 31 H 0.12 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.05 1.53 7.86 -2.39 -0.02 1.51 16 33 H 0.05 1.61 7.88 -2.38 -0.02 1.59 16 34 H 0.39 12.29 8.46 -92.71 -0.78 11.51 16 35 H 0.10 4.54 6.68 -2.91 -0.02 4.52 16 36 H 0.10 5.73 6.18 -2.91 -0.02 5.71 16 37 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 38 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 39 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 40 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 41 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -62.90 343.77 4.15 -58.74 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.23 Total: 34.13 kcal Atomic # 6 Polarization: -65.02 SS G_CDS: 3.60 Total: -61.42 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -1.71 Total: -74.08 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -62.90 4.15 -58.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.912 kcal (2) G-P(sol) polarization free energy of solvation -62.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds