Wall clock time and date at job start Tue Mar 31 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47186 * 2 1 4 4 H 1.08995 * 109.47386 * 54.86008 * 3 2 1 5 5 N 1.46505 * 109.47263 * 294.85753 * 3 2 1 6 6 C 1.38853 * 119.99901 * 157.69567 * 5 3 2 7 7 C 1.39568 * 119.84476 * 355.06097 * 6 5 3 8 8 C 1.36343 * 120.16212 * 179.71758 * 7 6 5 9 9 C 1.40885 * 119.83432 * 0.55048 * 8 7 6 10 10 C 1.41137 * 120.15370 * 179.69583 * 9 8 7 11 11 H 1.07998 * 119.99940 * 208.16310 * 10 9 8 12 12 C 1.39869 * 120.00016 * 28.16814 * 10 9 8 13 13 N 1.30910 * 119.99828 * 13.76039 * 12 10 9 14 14 Si 1.86803 * 120.00099 * 193.76651 * 12 10 9 15 15 H 1.48500 * 109.46755 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.46994 * 119.99748 * 14 12 10 17 17 H 1.48496 * 109.46802 * 239.99805 * 14 12 10 18 18 C 1.40884 * 119.69066 * 359.72652 * 9 8 7 19 19 C 1.36343 * 119.83418 * 359.97438 * 18 9 8 20 20 C 1.50698 * 109.47054 * 174.86082 * 3 2 1 21 21 C 1.38231 * 120.00145 * 79.72520 * 20 3 2 22 22 C 1.38238 * 120.00101 * 179.81037 * 21 20 3 23 23 C 1.38237 * 119.99800 * 0.39801 * 22 21 20 24 24 C 1.38228 * 120.00043 * 359.85777 * 23 22 21 25 25 C 1.38235 * 119.99713 * 260.00022 * 20 3 2 26 26 H 1.08992 * 109.47054 * 185.12724 * 1 2 3 27 27 H 1.09005 * 109.46915 * 305.12960 * 1 2 3 28 28 H 1.09004 * 109.46764 * 65.12369 * 1 2 3 29 29 H 1.09001 * 109.46707 * 240.00275 * 2 1 3 30 30 H 1.08997 * 109.46746 * 120.00144 * 2 1 3 31 31 H 0.96996 * 119.99838 * 337.70039 * 5 3 2 32 32 H 1.08001 * 119.91656 * 359.97438 * 7 6 5 33 33 H 1.07998 * 120.07898 * 180.27476 * 8 7 6 34 34 H 0.96999 * 119.99717 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.08017 * 179.97438 * 18 9 8 36 36 H 1.07997 * 119.91580 * 179.97438 * 19 18 9 37 37 H 1.07996 * 120.00524 * 0.02562 * 21 20 3 38 38 H 1.07998 * 120.00288 * 180.23411 * 22 21 20 39 39 H 1.08002 * 120.00060 * 179.83469 * 23 22 21 40 40 H 1.08008 * 120.00188 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00289 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6036 1.9822 0.8403 5 7 1.6554 2.0964 -1.2533 6 6 1.5794 3.4813 -1.3188 7 6 1.7687 4.2427 -0.1645 8 6 1.7011 5.6032 -0.2226 9 6 1.4280 6.2397 -1.4494 10 6 1.3502 7.6474 -1.5159 11 1 0.7294 8.1192 -2.2632 12 6 2.0771 8.4314 -0.6141 13 7 3.0263 7.8899 0.1067 14 14 1.6935 10.2511 -0.4381 15 1 0.5860 10.6146 -1.3582 16 1 1.2894 10.5387 0.9616 17 1 2.9004 11.0465 -0.7784 18 6 1.2323 5.4645 -2.6094 19 6 1.3088 4.1051 -2.5376 20 6 3.5417 1.4443 0.1273 21 6 4.3296 1.1966 -0.9812 22 6 5.7071 1.2021 -0.8652 23 6 6.2965 1.4474 0.3609 24 6 5.5085 1.6899 1.4704 25 6 4.1310 1.6882 1.3537 26 1 -0.3633 -1.0235 0.0918 27 1 -0.3633 0.5914 0.8405 28 1 -0.3633 0.4323 -0.9324 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.4539 1.5620 -2.0372 32 1 1.9733 3.7531 0.7761 33 1 1.8522 6.1913 0.6706 34 1 3.5301 8.4335 0.7324 35 1 1.0221 5.9459 -3.5531 36 1 1.1586 3.5095 -3.4259 37 1 3.8692 1.0021 -1.9385 38 1 6.3227 1.0123 -1.7320 39 1 7.3726 1.4491 0.4521 40 1 5.9690 1.8811 2.4285 41 1 3.5154 1.8777 2.2205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:02 Heat of formation + Delta-G solvation = 38.166916 kcal Electronic energy + Delta-G solvation = -21286.107016 eV Core-core repulsion = 18322.829679 eV Total energy + Delta-G solvation = -2963.277337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.43664 -37.76814 -35.97878 -33.57778 -31.76268 -30.79933 -30.56628 -29.40517 -28.30502 -25.79415 -24.05394 -22.46743 -22.02310 -21.26717 -20.56048 -19.39892 -17.16091 -16.71176 -16.29066 -15.40801 -15.15235 -14.85985 -14.25583 -13.91877 -13.76783 -13.63573 -13.15594 -12.91571 -12.59132 -12.45787 -12.33295 -11.95074 -11.81925 -11.67016 -11.47967 -11.09699 -10.98043 -10.94472 -10.80122 -10.65042 -10.59198 -10.39301 -9.62492 -9.31832 -9.17346 -8.64764 -8.54762 -8.37782 -7.44489 -6.55626 -6.33669 -4.01119 1.62838 1.68510 2.94375 3.14302 3.18139 3.23449 3.37610 4.01386 4.09943 4.35564 4.80380 4.91983 5.11980 5.13581 5.21038 5.24441 5.34530 5.51045 5.71420 5.80068 5.84044 5.87770 5.89702 5.96747 6.14947 6.24590 6.29924 6.31592 6.33343 6.40567 6.72119 6.74996 6.85240 6.97298 7.02505 7.24730 7.27424 7.40725 7.59501 7.73634 7.88151 8.20177 8.32647 8.53055 8.73337 8.84377 9.11287 9.19465 10.45538 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017096 B = 0.004838 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.433483 B = 5786.695306 C = 6656.857546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.200 3.800 4 H 0.080 0.920 5 N -0.749 5.749 6 C 0.100 3.900 7 C -0.161 4.161 8 C -0.118 4.118 9 C 0.074 3.926 10 C -0.468 4.468 11 H 0.071 0.929 12 C 0.073 3.927 13 N -0.813 5.813 14 Si 0.903 3.097 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.278 1.278 18 C -0.184 4.184 19 C -0.161 4.161 20 C -0.085 4.085 21 C -0.095 4.095 22 C -0.124 4.124 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.114 4.114 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.383 0.617 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.274 0.726 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.642 -13.858 2.243 14.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.092 3.908 4 H 0.097 0.903 5 N -0.383 5.383 6 C 0.003 3.997 7 C -0.183 4.183 8 C -0.138 4.138 9 C 0.071 3.929 10 C -0.500 4.500 11 H 0.089 0.911 12 C -0.141 4.141 13 N -0.441 5.441 14 Si 0.728 3.272 15 H -0.187 1.187 16 H -0.201 1.201 17 H -0.203 1.203 18 C -0.204 4.204 19 C -0.183 4.183 20 C -0.087 4.087 21 C -0.114 4.114 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.140 4.140 25 C -0.132 4.132 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.216 0.784 32 H 0.105 0.895 33 H 0.134 0.866 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.842 -13.769 2.586 14.130 hybrid contribution 0.112 0.836 -0.196 0.866 sum 1.953 -12.932 2.390 13.296 Atomic orbital electron populations 1.21728 0.95212 1.00891 1.02660 1.21745 0.96345 0.95655 1.02325 1.19589 0.88789 0.92680 0.89714 0.90264 1.43894 1.80041 1.03402 1.11007 1.17307 1.06200 0.82015 0.94148 1.20093 1.08652 0.94488 0.95049 1.20920 1.02355 0.92106 0.98403 1.17497 0.91741 0.93269 0.90402 1.19380 1.24947 0.91228 1.14436 0.91056 1.25771 0.93449 1.00444 0.94444 1.69853 1.16053 1.37642 1.20596 0.86360 0.79143 0.82914 0.78785 1.18718 1.20057 1.20326 1.20570 1.10074 0.92606 0.97178 1.19796 1.09435 0.94784 0.94311 1.20586 0.97035 0.97861 0.93256 1.20855 0.93202 0.99097 0.98213 1.21089 0.94998 1.00848 0.97306 1.21044 0.99380 1.01041 0.93187 1.21049 0.93879 1.00531 0.98493 1.20993 0.94812 1.00229 0.97198 0.93179 0.92610 0.92217 0.91821 0.91211 0.78390 0.89496 0.86575 0.91524 0.89161 0.89722 0.86595 0.86672 0.86703 0.86530 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.74 37.16 0.36 -1.25 16 2 C -0.12 -1.40 5.43 -26.73 -0.15 -1.55 16 3 C 0.20 2.92 1.89 -69.08 -0.13 2.79 16 4 H 0.08 1.26 6.26 -51.93 -0.33 0.94 16 5 N -0.75 -12.46 4.04 -53.16 -0.21 -12.68 16 6 C 0.10 2.14 6.60 -83.69 -0.55 1.59 16 7 C -0.16 -3.78 9.10 -39.77 -0.36 -4.14 16 8 C -0.12 -3.13 8.60 -39.26 -0.34 -3.47 16 9 C 0.07 2.02 5.55 -106.79 -0.59 1.43 16 10 C -0.47 -12.94 9.04 -37.87 -0.34 -13.28 16 11 H 0.07 1.91 7.88 -52.49 -0.41 1.50 16 12 C 0.07 1.93 5.19 -17.33 -0.09 1.84 16 13 N -0.81 -22.14 10.96 55.54 0.61 -21.53 16 14 Si 0.90 19.65 29.58 -169.99 -5.03 14.62 16 15 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 18 C -0.18 -4.61 9.74 -39.26 -0.38 -4.99 16 19 C -0.16 -3.61 9.82 -39.77 -0.39 -4.00 16 20 C -0.09 -1.31 4.80 -104.63 -0.50 -1.81 16 21 C -0.10 -1.45 9.32 -39.58 -0.37 -1.81 16 22 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 23 C -0.13 -1.75 10.05 -39.59 -0.40 -2.15 16 24 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 25 C -0.11 -1.68 9.67 -39.58 -0.38 -2.06 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.38 5.68 8.58 -40.82 -0.35 5.33 16 32 H 0.09 1.89 6.16 -52.49 -0.32 1.57 16 33 H 0.12 3.22 6.27 -52.49 -0.33 2.89 16 34 H 0.27 6.84 8.30 -40.82 -0.34 6.51 16 35 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 36 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.12 1.67 7.73 -52.49 -0.41 1.27 16 38 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 41 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -29.06 340.52 -10.83 -39.90 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -5.92 Total: 11.68 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: -5.41 Total: -37.12 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.39 Total: -34.21 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.06 -10.83 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.064 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds